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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   Y09541; SV 1; linear; mRNA; STD; PLN; 1440 BP.
XX
AC   Y09541;
XX
DT   01-OCT-1997 (Rel. 52, Created)
DT   18-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE   Zinnia elegans mRNA for pectate lyase
XX
KW   pectatelyase.
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OS   Zinnia violacea
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae;
OC   Zinnia.
XX
RN   [1]
RX   DOI; 10.1046/j.1365-313X.1998.00002.x
RX   PUBMED; 9680962.
RA   Domingo C., Roberts K., Stacey N.J., Connerton I., McCann M.C.;
RT   "A pectate lyase from Zinnia elegans is auxin inducible";
RL   Plant J. 13(1):17-28(1998).
XX
RN   [2]
RP   1-1440
RA   Domingo C.;
RT   ;
RL   Submitted (15-NOV-1996) to the EMBL/GenBank/DDBJ databases.
RL   C. Domingo, John Innes Centre, Colney, Norwich, NR4 7UH, UK
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1440
FT                   /organism="Zinnia violacea"
FT                   /sub_species="Envy"
FT                   /mol_type="mRNA"
FT                   /clone_lib="lambda-ZAP"
FT                   /clone="ZePel"
FT                   /db_xref="taxon:34245"
FT   CDS             28..1233
FT                   /product="pectate lyase"
FT                   /db_xref="GOA:O24554"
FT                   /db_xref="InterPro:IPR002022"
FT                   /db_xref="InterPro:IPR006626"
FT                   /db_xref="InterPro:IPR011050"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="InterPro:IPR018082"
FT                   /db_xref="UniProtKB/Swiss-Prot:O24554"
FT                   /protein_id="CAA70735.1"
FT                   /translation="MATTILPLILFISSLAIASSSPSRTPHAIVNEVHKSINASRRNLG
FT                   YLSCGTGNPIDDCWRCDPNWANNRQRLADCAIGFGKNAMGGRNGRIYVVTDPGNDDPVN
FT                   PVPGTLRYAVIQDEPLWIIFKRDMVIQLRQELVMNSHKTIDGRGVNVHIGNGPCITIHY
FT                   ASNIIIHGIHIHDCKQAGNGNIRNSPHHSGWWTQSDGDGISIFASKDIWIDHNSLSNCH
FT                   DGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMP
FT                   RCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEW
FT                   KNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCRKGS
FT                   RC"
FT   mat_peptide     88..1230
FT                   /product="pectate lyase"
FT                   /EC_number="4.2.2.2"
FT   sig_peptide     28..87
XX
SQ   Sequence 1440 BP; 422 A; 262 C; 317 G; 439 T; 0 other;
     gcacgagacc accatcacct ctaaaaaatg gcaaccacaa ttctaccact aatcctcttt        60
     atatcttcac tagccattgc ttcttcatca ccaagtagaa ccccacatgc catagtcaat       120
     gaagtccaca agagcatcaa tgcttcccgt agaaacttgg gttacctgtc ttgtgggaca       180
     ggtaacccaa ttgatgattg ctggcggtgt gaccctaact gggccaataa ccgccagcgt       240
     cttgctgact gtgccattgg gtttggaaag aacgcgatgg gtgggcgaaa tggaaggata       300
     tatgttgtca ctgatcccgg gaatgatgat ccagtgaacc ctgttcccgg gaccctgaga       360
     tatgcggtta ttcaagatga accgttgtgg atcatcttta aacgcgacat ggtaattcaa       420
     ctacggcaag aacttgtgat gaattctcac aagaccatag atggtagggg tgtgaatgtg       480
     catattggta atggcccatg cattactata cattatgcta gtaatattat tatacatggt       540
     attcatatac atgattgtaa gcaggctggt aatggtaaca ttagaaactc accacatcat       600
     agtggatggt ggacacaatc tgatggtgat gggatatcca tttttgctag caaagatata       660
     tggattgatc ataattcttt gtctaattgt catgatgggc tcattgatgc catacatgga       720
     tctactgcca tcactatttc taacaattac atgactcatc atgataaagt tatgttgtta       780
     ggacatagtg atagttatac tcaagataag aacatgcaag ttactattgc atttaaccat       840
     tttggtgaag gtcttgttca aagaatgcca agatgtagac atgggtattt ccatgtggtg       900
     aacaatgact atacacattg ggagatgtat gctattggag gaagtgcatc tcctaccatc       960
     tatagccaag gcaatagatt tttggctccc aatacaagat ttgacaagga ggtgacaaaa      1020
     catgagaatg cacccgaaag tgaatggaag aactggaatt ggagatcaga aggagatttg      1080
     atgttaaacg gtgcttattt tagagaatca ggtggacgtg ctgcttcatc ttttgcaagg      1140
     gcgtcgagtt tgagtggcag accatctaca cttgtggcgt caatgactcg atcagccgga      1200
     gcgctcgttt gccgaaaagg gtctcgttgt tgattatgga ctagagacat atataaagtt      1260
     attgcatttt gtgtttcttt cttgtatttc tatgtttttg ttacttgctt ttactaatat      1320
     gtcatgtcaa cctttgtgct tggttggata tgaatcaaga tgagtctttc atatggacca      1380
     acaaattaaa tgcaaaagag ttgaccaaat gaatatttat atattatatt taatttctct      1440
//
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