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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   Y00963; SV 1; linear; genomic DNA; STD; PRO; 1385 BP.
XX
AC   Y00963;
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DT   15-DEC-1988 (Rel. 18, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 4)
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DE   Clostridium perfringens nanH gene for sialidase (neuraminidase) ( EC
DE   3.2.1.18)
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KW   nanH gene; neuraminidase; sialidase.
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OS   Clostridium perfringens
OC   Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
OC   Clostridium.
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RN   [1]
RP   1-1385
RA   Roggentin P., Schauer R.;
RT   ;
RL   Submitted (29-AUG-1988) to the EMBL/GenBank/DDBJ databases.
RL   Dr. Peter R., Prof. Schauer  R., Biochemisches Institut der
RL   Christian-Albrechts Univ., Olshausenstr. 40, D-2300 Kiel.
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RN   [2]
RP   1-1385
RX   DOI; 10.1016/0014-5793(88)80219-9
RX   PUBMED; 2901987.
RA   Roggentin P., Rothe B., Lothspeich F., Schauer R.;
RT   "Cloning and sequencing of a Clostridium perfringens sialidase gene";
RL   FEBS Lett. 238(1):31-34(1988).
XX
CC   The gene was shown to be highly expressed in E. coli, but deduced
CC   AA seq. does not represent the previously described C. perfringens
CC   sialidase; a second sialidase with low activity as possible product
CC   of this gene could be detected.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1385
FT                   /organism="Clostridium perfringens"
FT                   /strain="A99"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:1502"
FT   repeat_region   112..123
FT                   /note="inverted repeat A"
FT   repeat_region   134..145
FT                   /note="inverted repeat A'"
FT   RBS             215..222
FT                   /note="pot. ribosome binding site"
FT   CDS             231..1379
FT                   /transl_table=11
FT                   /note="sialidase (AA 1 - 382)"
FT                   /db_xref="GOA:P10481"
FT                   /db_xref="InterPro:IPR008377"
FT                   /db_xref="InterPro:IPR011040"
FT                   /db_xref="UniProtKB/Swiss-Prot:P10481"
FT                   /protein_id="CAA68780.1"
FT                   /translation="MCNKNNTFEKNLDISHKPEPLILFNKDNNIWNSKYFRIPNIQLLN
FT                   DGTILTFSDIRYNGPDDHAYIDIASARSTDFGKTWSYNIAMKNNRIDSTYSRVMDSTTV
FT                   ITNTGRIILIAGSWNTNGNWAMTTSTRRSDWSVQMIYSDDNGLTWSNKIDLTKDSSKVK
FT                   NQPSNTIGWLGGVGSGIVMDDGTIVMPAQISLRENNENNYYSLIIYSKDNGETWTMGNK
FT                   VPNSNTSENMVIELDGALIMSTRYDYSGYRAAYISHDLGTTWEIYEPLNGKILTGKGSG
FT                   CQGSFIKATTSNGHRIGLISAPKNTKGEYIRDNIAVYMIDFDDLSKGVQEICIPYPEDG
FT                   NKLGGGYSCLSFKNNHLGIVYEANGNIEYQDLTPYYSLINKQ"
XX
SQ   Sequence 1385 BP; 536 A; 192 C; 219 G; 438 T; 0 other;
     cttatacctt cttaaagtta taaaagctaa aattttatag aaaactccaa aaacaattat        60
     atttgcctta ttccatagta aagaatttca aatactgtta taatttattt gaaaaacttc       120
     tataattttc aatatagaag tttttaatag ttaggtttct aaagctattt ataagaaaaa       180
     taacttttaa attaatgggt aaatatgaat ttatggagga gattatattt atgtgtaaca       240
     aaaacaatac ctttgaaaag aatctagata taagccataa accagaacca ctaatactat       300
     ttaacaagga taataacata tggaattcaa agtattttag aattcccaat atacaattat       360
     taaatgatgg tacaatttta accttttcag atattcgtta taatggtcct gatgaccatg       420
     cttatataga catagcttct gcacgtagta ctgattttgg aaagacatgg agctataaca       480
     tagcaatgaa aaataatcgt attgactcta cttattctcg tgtaatggac tccacaacag       540
     ttattacaaa tacaggtaga ataatattaa ttgcaggctc atggaataca aatggaaact       600
     gggcaatgac tacttctaca agaagaagtg attggtctgt ccaaatgatt tattctgatg       660
     acaatggatt aacttggtct aataaaatag atttaactaa ggactcttca aaagtaaaaa       720
     atcaaccaag taatacaatt ggatggctag gaggagttgg ctcaggtatt gtaatggatg       780
     atggaacaat agttatgcca gcacaaattt ccttaagaga aaataatgaa aataactatt       840
     attcattaat tatctattca aaggataatg gtgaaacatg gacaatggga aacaaggttc       900
     ctaattcaaa cacctccgaa aatatggtaa tagaattaga tggcgcttta attatgagta       960
     caagatatga ttactctggc tatagggcag catacatctc tcatgattta ggaaccactt      1020
     gggaaatata tgaaccttta aacggtaaaa ttttaactgg taagggctct ggatgccaag      1080
     gttcctttat taaggctact acttcaaatg gacatagaat aggattaatt tcagcaccta      1140
     aaaacactaa aggtgaatat ataagagaca atattgccgt ttatatgatt gactttgatg      1200
     atttatctaa aggagttcaa gaaatatgca ttccttatcc tgaagacggt aacaaattag      1260
     gtggtggcta ttcttgtcta tcatttaaaa ataaccatct aggcattgtt tatgaagcca      1320
     atggaaatat agaatatcaa gacttaacac cttattactc actaattaat aaacaataat      1380
     aaaat                                                                  1385
//
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