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EBI DbfetchID Y00449; SV 1; linear; genomic DNA; STD; PRO; 2256 BP. XX AC Y00449; XX DT 16-JUL-1988 (Rel. 16, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Desulfovibrio desulfuricans genes DdeM and DdeR for DdeI methylase and DdeI DE endonuclease XX KW DdeI endonuclease; DdeI methylase; DdeM gene; DdeR gene; endonuclease; KW methylase. XX OS Desulfovibrio vulgaris OC Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; OC Desulfovibrionaceae; Desulfovibrio. XX RN [1] RP 1-2256 RX DOI; 10.1093/nar/15.20.8249 RX PUBMED; 2823226. RA Sznyter L.A., Slatko B., Moran L., O'Donnell K.H., Brooks J.E.; RT "Nucleotide sequence of the DdeI restriction-modification system and RT characterization of the methylase protein"; RL Nucleic Acids Res. 15(20):8249-8266(1987). XX CC Data kindly reviewed (20-MAY-1988) by Sznyter L.A. XX FH Key Location/Qualifiers FH FT source 1..2256 FT /organism="Desulfovibrio vulgaris" FT /strain="Norway" FT /mol_type="genomic DNA" FT /clone="pDder2.3 & pDdeM2.0" FT /db_xref="taxon:881" FT CDS 138..860 FT /transl_table=11 FT /gene="DdeM" FT /product="DdeI endonuclease" FT /db_xref="GOA:P05301" FT /db_xref="UniProtKB/Swiss-Prot:P05301" FT /protein_id="CAA68504.1" FT /translation="MKAATDQELRKLIVLYNNVMEVMEHDAAKSMRDDNRAYGGFVRAA FT KGKIQELITERLVRTVWDVEMGENPERLSINSKKIKIPILRSYVDSINDENLKKYISSN FT ILKYSYGLSVDKHVFIDNKFVLGIECKAYTENAMLKRILVDFYLLKTKFPKLNCFLFQL FT ESQLGGDYSECNKFPIGSYPTRTIMSYFKNVDLNIVTLLEGERKVDRPINKPQFFKPLK FT VEHLEVAIGYLQESLSEI" FT CDS 864..2111 FT /transl_table=11 FT /gene="DdeR" FT /product="DdeI methylase" FT /db_xref="GOA:P05302" FT /db_xref="HSSP:1DCT" FT /db_xref="InterPro:IPR018117" FT /db_xref="UniProtKB/Swiss-Prot:P05302" FT /protein_id="CAA68505.1" FT /translation="MNIIDLFAGCGGFSHGFKMAGYNSILAIEKDLWASQTYSFNNPNV FT SVITEDITTLDPGDLKISVSDVDGIIGGPPCQGFSLSGNRDQKDPRNSLFVDFVRFVKF FT FSPKFFVMENVLGILSMKTKSRQYVKDIIAEEFSNVGYKVCVIILNACDYGVPQSRQRV FT FFIGLKSDRPLNQQILTPPSKVIESEYTSLEEAISDLPVIEAGEGGEVQDYPVAPRNKY FT QENMRKGSTCVYNHVAMRHTQRLVDRFAAIKFGQSVKHVSEEHSQRKRGDANSISGKVF FT SQNNMRPYPYKPCPTVAASFQSNFIHPFYNRNFTAREGARIQSFPDTYIFQGKRTTMSW FT EKHLSQYQQIGNAVPPLLAQALAERISWYFENINLINDSNVSIKRMVQRSFMSQLNLEN FT NVNVRQDDNYDKVHSF" XX SQ Sequence 2256 BP; 709 A; 343 C; 496 G; 708 T; 0 other; cgaaaaggaa aggttgatga agaactggtt aaatgtcgaa tatcaatgaa ggattaggat 60 ttatgtaggg ttgactcgta gatacctata atataatgga tcggaattta tataatattg 120 taggagtggg ggcgactatg aaggcagcga cagatcaaga attgagaaag cttatcgtct 180 tgtacaataa tgttatggaa gtgatggaac atgatgctgc gaagtcaatg cgagatgata 240 atcgtgcgta cggtgggttt gttcgcgctg ctaaagggaa aattcaagag cttataacag 300 aaaggctagt aaggacggtt tgggatgttg aaatgggtga gaatccagaa aggctttcta 360 taaattcaaa aaaaataaag attcctattc ttcgatcata cgttgattca ataaatgacg 420 aaaatttaaa aaaatacata tcttcaaata ttttaaaata tagctatggt ctttctgtag 480 ataagcatgt ttttattgat aacaaatttg ttttaggaat tgagtgtaag gcatacacag 540 aaaatgcaat gttaaaaaga atacttgtag atttttattt gttaaagaca aagtttccaa 600 aattgaattg ctttttgttt caacttgaaa gtcaacttgg tggtgattat tcggaatgta 660 ataagtttcc gataggtagt tatcctacaa ggactataat gtcatatttc aaaaatgtag 720 atttgaatat cgtgacattg ttagagggtg aaaggaaagt tgatcgccca ataaataagc 780 cacagttttt taagccgcta aaagttgagc atttagaagt agctattggg tatctacaag 840 aatcattatc ggagatttag aggatgaata taattgattt atttgcaggt tgcggtggat 900 ttagtcacgg ttttaagatg gctggctata attcgatact agccatcgaa aaagatcttt 960 gggcatcgca aacatattcg tttaacaatc ctaacgtaag tgtgatcaca gaagatatta 1020 caactttgga tccaggggac ttgaaaattt ctgtctcgga tgttgatggg attattggtg 1080 ggcctccatg tcagggtttt tctctttctg gaaatagaga ccaaaaagat ccaagaaata 1140 gtctttttgt tgattttgtt cgatttgtga aattcttttc tccaaagttt tttgttatgg 1200 aaaacgtact tggcatccta tcaatgaaga caaagagtcg tcagtatgtt aaagatatta 1260 ttgctgaaga attttctaat gtcggatata aagtatgtgt tattatctta aacgcttgtg 1320 attatggggt tcctcaatct cgtcaacgtg ttttttttat tggtttaaaa tcagacaggc 1380 ctcttaatca gcaaattttg acccctccat ctaaagttat agagtcagaa tacacttctc 1440 ttgaagaggc gatcagtgat ttgccagtga tagaggcggg tgaaggaggg gaggtgcagg 1500 attatcccgt tgctcctagg aacaagtatc aagaaaatat gcggaaggga tcaacgtgtg 1560 tgtataatca tgttgcgatg cgtcacacac agcggcttgt tgatagattc gccgcaatta 1620 aattcggcca atctgttaag catgtctctg aagagcactc acaaagaaag cgtggagatg 1680 caaactcaat aagtgggaaa gttttttctc aaaataatat gaggccttat ccatataagc 1740 cgtgcccgac cgtagctgca agttttcaga gtaattttat tcatccattt tacaatagaa 1800 attttacagc tcgggaagga gctaggatac agtcatttcc agatacatat atatttcaag 1860 gtaaaagaac tacaatgtcc tgggaaaagc atctttctca atatcagcaa attggaaatg 1920 ctgttcctcc cttgcttgcg caagctctgg cggagagaat ttcttggtat tttgaaaata 1980 taaatttgat aaacgactca aatgtatcga ttaaaaggat ggtgcagcgt tcttttatgt 2040 ctcaattaaa tttagaaaat aacgtcaacg tacggcaaga cgataattat gacaaggtac 2100 atagttttta ataaagctag tgatattttt tgtttgtcta ggtgaaaagc ctcgcccaga 2160 aaccgcgctt ctgtgctggt tgtggtgccg ccgtcaacgc cttggcctgc catttgccat 2220 gcgtccgttg ttcctgccat cggtccgtct gtccga 2256 // |
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