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EBI DbfetchID X90904; SV 1; linear; genomic RNA; STD; VRL; 3524 BP. XX AC X90904; XX DT 06-JAN-1996 (Rel. 46, Created) DT 13-DEC-1996 (Rel. 50, Last updated, Version 4) XX DE Barley mild mosaic virus complete sequence of RNA2 of fungally transmitted DE UK isolate XX KW complete sequence; RNA2 polyprotein. XX OS Barley mild mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; OC Bymovirus. XX RN [1] RX DOI; 10.1016/0168-1702(95)01267-2 RX PUBMED; 8725111. RA Peerenboom E., Jacobi V., Antoniw J.F., Schlichter U., Cartwright E., RA Steinbiss H.H., Adams M.J.; RT "The complete nucleotide sequence of RNA-2 of a fungally-transmitted UK RT isolate of barley mild mosaic bymovirus and identification of amino acid RT combinations possibly involved in fungus transmission"; RL Virus Res. 40(2):149-159(1996). XX RN [2] RP 1-3524 RA Antoniw J.F.; RT ; RL Submitted (17-AUG-1995) to the EMBL/GenBank/DDBJ databases. RL J.F. Antoniw, IACR-ROTHAMSTED, Plant Pathology Department, Harpenden, RL Herts, AL5 2JQ, UK XX FH Key Location/Qualifiers FH FT source 1..3524 FT /organism="Barley mild mosaic virus" FT /host="barley" FT /strain="UK-F" FT /mol_type="genomic RNA" FT /clone="pC6" FT /db_xref="taxon:12466" FT CDS 143..2827 FT /gene="RNA2" FT /product="RNA2 polyprotein" FT /db_xref="GOA:Q65657" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/Swiss-Prot:Q65657" FT /protein_id="CAA62412.1" FT /translation="MMMNSTIRQGWQQVLRRFSIPASGDRLIVSNSTDQPIGLFGAFDT FT SLQTLSQVTNDPEILKQKSNIPTHLDIASVLETSPRSFPWVFLTNSFCTFGGSIHAQNL FT QAFATAEFKSGFCYMNLLIPLSFDIIDAHADSFRGFVEQLPDTLGAYPSLSMVLNVMLH FT AATRFPEIVASPVPTIAFDAESLQFHVTDKRGVPGMWNILKACRVYELLSLAADGIGCE FT YMLYPVGAAPQYSFWKKSMDHFISDRFVEFLAMQGLLASALEQDYKTHDARDALLTALQ FT NAGYTNVVARERRFPNGHDPSTVWLNLNEAPISEKLTELKRYLLVGHRSDEIADITHNV FT HQHVFEVLKTMSVQFSKTTNAYNRARFEVNHEVIWNAEYGRSSQQNAELEALVLFLNRQ FT SLEIENILRRTTSPVVVTNWQPDVPPAAPEISEGEPTHAVATPITEAPTHATPVEVVNL FT PPTRSYWAETLVGVLTAILGTIFALLTRALIRPKRLRRKSTFPWVSLDSGDEDDDHSGG FT GGGSPQTPGGQPPASPAPGTHQSRFSVQDIASDTSLLSVDLDEDTLSQYDETFQTIRRA FT LFENSFGDILQNSARWISTLEAMALADGNAPYTLLAQYLNGIEEAYTNFRNTGHISRAT FT LSGFFVLEDSLRAAGIAFGGTTPTQTIQNQSADSPARRWKTRFEQIACELGDASIKSLA FT DLADIIDTERERGDLTQFDVLAASSISSLCRAVRIISDTTDPNTQLALVENATAMQNNI FT NAILGTNVSIPFLSATRRLLITRRIQEAGAESRSGATPDTIQQLADAELAEIVSEANMF FT NEMAASQRDIANATREATIREHVLSPVNALANVGMAAAFFRSGGLRSRAFHPTMPTMPG FT SPAAIGRPMFQAFRGRGHRLNRR" FT polyA_site 3524 XX SQ Sequence 3524 BP; 912 A; 990 C; 786 G; 836 T; 0 other; aaaaaataaa actacacaaa aacccaacga cttaaaacga tcacaatcaa acgagcaaac 60 acacaacaag caaacacaac agattgcagc gcacagttct gaaacacgaa ctcatccact 120 gcagtcttgg aatccgatcg cgatgatgat gaactctacg attcgccaag gatggcagca 180 agtgctcagg cgcttttcca tcccagcatc cggagataga ctcatcgtct ccaattccac 240 tgatcagccc ataggtcttt tcggagcatt tgatacatca ctccaaacac tctcacaagt 300 caccaatgac cctgagattt tgaagcagaa gtccaacatc cccacgcatc tagacatagc 360 atctgtgctc gaaaccagcc ctcgatcttt tccatgggtt ttcctcacaa actccttctg 420 cactttcggt ggctccatac acgctcagaa ccttcaagcc tttgcaaccg ccgagttcaa 480 gagtggattt tgttacatga acctgctgat accgcttagc ttcgacatca tcgatgcaca 540 cgccgattcc ttccgcggtt ttgtcgaaca actccctgat acgctaggtg cctatccttc 600 gctcagcatg gtactaaacg tcatgctgca cgcagctacg cgcttcccag agattgttgc 660 ttcccccgtt ccaactatag cattcgatgc tgaatcactg caatttcatg taactgataa 720 acggggcgtc cctggcatgt ggaacatact taaggcctgc cgcgtgtatg agctcctctc 780 gcttgctgcg gatggcatag gctgcgagta catgctgtat cccgttggcg ctgcgcccca 840 atactccttc tggaagaaat ccatggacca cttcatatct gaccggtttg tggaattctt 900 agccatgcag ggtttgcttg ctagtgcact tgagcaggat tacaaaacac acgacgcacg 960 cgatgcatta ctcacagctc tacagaacgc aggttacacg aatgttgtcg caagagaacg 1020 gagatttcca aacggccatg acccaagcac cgtctggttg aacctgaacg aggctcccat 1080 ttcagagaag ctaactgagc tcaaacgata cctcctggtt ggtcacagaa gcgatgagat 1140 tgcggacatc acacacaacg ttcaccagca cgtcttcgag gttcttaaaa ccatgtctgt 1200 ccagtttagc aagacaacca acgcttacaa ccgcgcccgt tttgaggtta accatgaggt 1260 gatatggaat gcagagtacg gacgcagttc tcaacaaaac gctgagctcg aagcccttgt 1320 tctatttctc aatagacagt cgctagagat cgaaaacatt ctgcgcagaa caactagtcc 1380 cgttgttgtg acgaactggc agcctgatgt tcctcccgca gcacctgaaa tcagcgaagg 1440 ggagccaacg catgcagtcg caacaccaat aactgaggca ccaacacatg caactcctgt 1500 tgaagttgtg aatttgccac caacacgctc ttattgggcc gaaacactcg ttggtgtgtt 1560 aaccgcaatt ttgggaacca tcttcgcctt gctcactcgg gcgctcattc gcccaaagag 1620 gctgcggaga aaatccacct ttccctgggt gtcactagac tctggagacg aagatgatga 1680 ccattctggt ggaggaggag gtagcccaca aacacccggc gggcagcccc cagcctcgcc 1740 agcacccgga actcaccagt cgcgcttttc cgtgcaagat atagcatcgg acacgagcct 1800 actgagtgtg gaccttgatg aagacacact ctcccagtac gacgaaactt tccagacaat 1860 tcgtcgtgcg ctcttcgaga acagttttgg agacatcctg caaaactcag ctcgctggat 1920 ctccacactg gaggcgatgg ctcttgcaga tggcaatgcc ccttacacgc tccttgcgca 1980 gtaccttaac ggaatcgagg aggcatacac aaactttcgc aacacagggc atatctcccg 2040 tgcaacattg tcaggcttct tcgttctgga ggatagtctg cgtgcggctg gcatagcttt 2100 tgggggcaca acgcccacgc aaactataca aaaccagtct gctgactccc cagcccgtcg 2160 atggaaaaca cgctttgagc agatcgcatg cgaactaggt gatgctagca tcaagtcgct 2220 tgcagatctt gcagacatca tcgacactga gcgtgagaga ggagacttaa ctcagtttga 2280 tgttctcgca gcttcctcca taagcagtct ctgccgcgct gtccgtatta tcagtgacac 2340 aactgatcca aacacacaac tagctcttgt cgagaacgca actgctatgc aaaacaacat 2400 aaacgccatc ctaggcacga atgttagcat ccctttcctc agcgcaacgc gtcgcctgct 2460 cataacacgt cgcattcaag aagctggagc ggagagccgc tctggcgcaa cgccagacac 2520 catacagcag ctcgccgatg ctgagctagc ggaaattgtc agcgaggcaa acatgttcaa 2580 tgagatggct gctagtcaga gagatattgc caatgcaaca cgcgaagcta ccattcgtga 2640 gcatgtactt agtcctgtta atgccttggc caatgttggc atggcggctg ctttcttccg 2700 atctggtggt ttgcgttcga gggcttttca tcccacaatg ccaacaatgc ctggtagtcc 2760 tgccgccata gggcggccaa tgtttcaagc ctttagagga cgagggcacc gtctcaatag 2820 acgttaaaac cctgtgcttt ggcacagcac tgaacaagcg acacgcgctt gttgtgataa 2880 ttgattccac gcttagcgtg ccactgaaca aacgacacac gtttgttgtg ataattaatt 2940 aatttttgcg cagactctgt ctgtgttttc tagagtgtgc tgctcggcag ctgcatcgga 3000 gggttttacg ggaacgacat catcacaccc catccacaaa ccgccctgca ttcacatctt 3060 tgtgccactt taaatactca tacgcatagg caagtgcctt tccggcagag catcccctgg 3120 catcgacact cacgcgatcg caatcaactg acttaatcct cggttttgca atcatatagt 3180 gagttctacc cctggacgtg ttcccccgga actgcaatcc tcgttatgtt gtcgctgatt 3240 actatcagct cgtaaaccat gatatccacc cacaattagc tattcgtgta ctagcatcat 3300 cggatacgcc tatcctgcac ttaagcctgc aggacgctat caggtccgct gactgttacc 3360 atttgtgtag ctcgttgtgg ttccgcctca tatctaaatt cagtacctgc atacaaaacg 3420 tcatgcatcc ctgttcaaca tgagcacggg tttgggaaga agcaagtcat catagactgc 3480 tggcattgtt aggttgacaa tgcttatgta cacaggaacg tgac 3524 // |
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