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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   X79232; SV 1; linear; genomic DNA; STD; PRO; 1449 BP.
XX
AC   X79232;
XX
DT   17-MAY-1994 (Rel. 39, Created)
DT   18-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE   E.carotovora (SCC 3193) pelB gene.
XX
KW   pectatelyase; pelB gene.
XX
OS   Pectobacterium carotovorum
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
OC   Enterobacteriaceae; Pectobacterium.
XX
RN   [1]
RX   PUBMED; 7756691.
RA   Heikinheimo R., Flego D., Pirhonen M., Karlsson M.B., Eriksson A., Mae A.,
RA   Koiv V., Palva E.T.;
RT   "Characterization of a novel pectate lyase from Erwinia carotovora subsp.
RT   carotovora";
RL   Mol. Plant Microbe Interact. 8(2):207-217(1995).
XX
RN   [2]
RP   1-1449
RA   Heikinheimo R.;
RT   ;
RL   Submitted (13-MAY-1994) to the EMBL/GenBank/DDBJ databases.
RL   R. Heikinheimo, Swedish University of Agric. Sciences, Dept of Molecular
RL   Genetics, Uppsala Genetic Center, Box 7010, 75007 Uppsala, SWEDEN
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1449
FT                   /organism="Pectobacterium carotovorum"
FT                   /sub_species="carotovora"
FT                   /strain="SCC3193"
FT                   /mol_type="genomic DNA"
FT                   /clone="pMUT4:0"
FT                   /sub_clone="pMUT4:4"
FT                   /db_xref="taxon:554"
FT   CDS             277..1320
FT                   /transl_table=11
FT                   /gene="pelB"
FT                   /product="pectate lyase"
FT                   /db_xref="GOA:Q47471"
FT                   /db_xref="HSSP:1EE6"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/TrEMBL:Q47471"
FT                   /protein_id="CAA55814.1"
FT                   /translation="MFKYLTPIFLCTAAFSFQAQADDTMLMLLKKDNATYLSWSTDAGN
FT                   VVRQDVYRSTSNNQAGSEKIAELNSTDRTFTDLTANPKSDYWYWVDTVSSNNNVQKSNA
FT                   AQTAPAPLRAAPLKAASSECKAGAVIKDKTVDCGGITLGLSCTGDSDKQPPVITLENAT
FT                   IKNLRISEKGGSDGIHCKSGNCRIENVIWEDVCEDAATNLGKTMTIVGGVAHNTTNGPG
FT                   GKPDKVLQQNAKNSHTIVQGNFTLTGQHGKLWRSCGDCTNNGGPRNLTIISATVNGTID
FT                   SIAGVNRNFGDVAEIRDLRIKNYKAGNPKICEEFKGIEKGKGKTEKYGEFWDSKNCKVS
FT                   RSNVKAL"
FT   mRNA            202..1409
FT                   /gene="pelB"
FT   TATA_signal     188..193
FT   -35_signal      156..163
FT   RBS             266..269
XX
SQ   Sequence 1449 BP; 468 A; 348 C; 294 G; 339 T; 0 other;
     atcccttctc gatatccatt tattatttcc attaacaacc ctatagatat taattaaaaa        60
     ataaataatt aaacaaaaca taattaacaa caaataaaat taaattaaaa ataataacaa       120
     ggtaaatcaa ataatatgat taacctcaat atttcccctg aattattatt aatccaaaac       180
     cccctgttat atacttccct cgatgcgcta ggactccctc tttatttagt ctaaataaag       240
     agaaaaaata tccgtttaat ttacaaggaa aaacacatgt ttaagtattt aacaccgata       300
     tttttatgta cggctgcttt ttcttttcaa gctcaggctg atgacaccat gctgatgctg       360
     ctgaaaaaag ataatgccac ctatttaagc tggtctaccg atgcaggcaa tgttgttcgc       420
     caggatgtgt atcgcagcac cagtaataat caggctggca gcgaaaaaat cgcagaactc       480
     aattctaccg acagaacctt tacggattta accgccaatc cgaaatcgga ctattggtat       540
     tgggtggata cggttagcag caataataac gtccagaagt ctaacgcagc acaaacagca       600
     ccagcgccat tacgtgcagc gccgctgaaa gcagccagtt cagagtgtaa agcgggcgcg       660
     gtaattaaag ataaaaccgt cgactgcggc ggtattactc tgggtctaag ttgtactggt       720
     gacagtgata agcagcctcc ggttatcacg ctggaaaatg ccaccattaa gaacctgcgt       780
     atctctgaaa aaggcggctc tgacggtatc cactgtaaat caggcaactg ccgtatcgaa       840
     aacgtgatct gggaagacgt ctgtgaagat gcagcaacca acctgggtaa aaccatgacc       900
     atcgtcggcg gtgttgccca taacaccacc aatggccctg gcggcaagcc ggacaaagtg       960
     ctgcaacaga atgccaaaaa cagccacact atcgtacagg gcaacttcac cctgactggc      1020
     caacacggca aactgtggcg ctcttgcggt gactgcacca acaacggtgg cccacgtaac      1080
     ctgaccatca tcagcgcaac cgttaacggc accatcgaca gcatcgctgg cgtaaaccgt      1140
     aactttggcg atgtcgctga aatccgcgat ctgcgtatta aaaactacaa agccggtaac      1200
     cctaaaatct gtgaagagtt taaaggcatc gaaaaaggga aaggaaagac tgagaaatat      1260
     ggtgaattct gggatagcaa gaactgcaaa gtcagccgtt caaacgtaaa agccctgtaa      1320
     ttcagccagt agaacgcact cctctggagt tcttacgcat cagacgccaa cagaccgtgc      1380
     ttataccagc acggtctgtt tcatttcatc acccttgctg caattcggta aacagcgtcg      1440
     cttcagcgc                                                              1449
//
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