 |
|
EBI DbfetchID X52522; SV 1; linear; genomic DNA; STD; PRO; 3991 BP. XX AC X52522; XX DT 24-APR-1990 (Rel. 23, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Rhodocyclus gelatinosus hupSL genes for uptake-hydrogenase subunits XX KW hupL gene; hupS gene; uptake hydrogenase. XX OS Rubrivivax gelatinosus OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax. XX RN [1] RP 1-3991 RA Richaud P.; RT ; RL Submitted (07-MAR-1990) to the EMBL/GenBank/DDBJ databases. RL Richaud P., CNRS UA 1130, DRF/LBIO/Biochimie Microbienne, CEN-Grenoble 85 RL X, 38041 / Grenoble Cedex, FRANCE. XX RN [2] RP 438-3789 RX DOI; 10.1007/BF00280367 RX PUBMED; 2325631. RA Uffen R.L., Colbeau A., Richaud P., Vignais P.M.; RT "Cloning and sequencing the genes encoding uptake-hydrogenase subunits of RT Rhodocyclus gelatinosus"; RL Mol. Gen. Genet. 221(1):49-58(1990). XX FH Key Location/Qualifiers FH FT source 1..3991 FT /organism="Rubrivivax gelatinosus" FT /mol_type="genomic DNA" FT /db_xref="taxon:28068" FT RBS 713..717 FT /note="put. ribosome binding site" FT CDS 727..1809 FT /transl_table=11 FT /product="hupS precursor protein (uptake-hydrogenase small FT subunit)" FT /db_xref="GOA:P17633" FT /db_xref="HSSP:1FRF" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/Swiss-Prot:P17633" FT /protein_id="CAA36754.1" FT /translation="METFYEVMRRQGISRRSFLKYCSLTATSLGLAPSFVPQIAHAMET FT KPRTPVLWLHGLECTCCSESFIRSAHPLAKDAVLSMISLDYDDTLMAAAGHQAEAILDE FT IMAKYKGNYILAVEGNPPLNEDGMFCIQRQALPREAQAVAADCKAVIAWGSCASWGCVQ FT AAKPNPTQATPIHKVITDKPIIKVPGCPPIAEVMTGVITYMLTFDRIPELDRQGRPKMF FT YSQRIHDKCYRRPHFDAGQFVESFDDENARKGFCLYKVGCKGPTTYNACSTVMWNEGTS FT FPIKAGHGARRSEDGFWDKGSFYDRLTNIHQFGIEASADKVGGTAAGVVGAAIAAHAAA FT SVIKRLSHDPDAAARAESRS" FT sig_peptide 727..852 FT /note="put. signal peptide (AA -42 to -1)" FT mat_peptide 853..1806 FT /note="mat. hupS protein (uptake-hydrogenase small subunit) FT (AA 1-318)" FT RBS 1832..1836 FT /note="put. ribosome binding site" FT CDS 1842..3698 FT /transl_table=11 FT /product="hupL protein ((uptake-hydrogenase large FT subunit)" FT /db_xref="GOA:P17632" FT /db_xref="HSSP:1UBL" FT /db_xref="InterPro:IPR018194" FT /db_xref="UniProtKB/Swiss-Prot:P17632" FT /protein_id="CAA36755.1" FT /translation="MGAIETQGFKLDDSGRRIVVDPVTRIEGHMRCEVNVDANNVIRNA FT VSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALTSVRAVEDALGIRIPKNAHL FT IREMMAKTLQVHDHAVHFYHLHALDWVDVVSALKADPKKTSELQHLVSPSHPLSSPGYF FT PRRGRTGLKKFVESGQLGPFMNGYWGSKAYVLPPEANLMAVTHYLEALDLQKEWVKVHA FT IFGGKNPHPNYLVGGVPCAINLDGNGAAGRINMERLNFVKARIDEMIEFNKNVYLPDVL FT AIGTIYKQAGWLHGGGLSALNVADYGTYDKVAYDHATHQLPGGVILDGNWDEIHAIDPR FT DPEQVQEFVAHSWYQYADESKGLHPWDGVTEPKFELGARTKGTRTAIEHIDESAKYSWI FT KSPRWRGHAVEVGPLSRYILGYAHALKGNKYCQRVKEQVDFAAEAINHAIPKALGLPET FT QYTLKQLLPTTIGRTLARCLEGQYCGEMMLADYHELVANIRAGDTATANVEKWDPATWP FT KEAKGVGTVAAPRGMLGHWIRIKDGKIENYQCVVPTTWNGSPRDAKGQIGAFEASLLGT FT PMVNPEQPVEILRTLHSFDPCLACSTHVMSEDGRELTTVKVR" XX SQ Sequence 3991 BP; 702 A; 1454 C; 1284 G; 551 T; 0 other; ctgccgctgc tggccgccac ccaccggcgc tttccgctga cgacgctgct ctacgcgctg 60 gtcttgctgc actgcacggt gctgatgctg ggcggcgcct acacctacgc gcggtgccgc 120 tgggcttcca gatccaggag tggttgcacg tgtcgcgcaa cccgtacgac aagatcggcc 180 acttcatgca gggcttcgtg ccggcgatgc ggcgcgcgag atcctgctgc gcggcggcgt 240 cgtgcgcggc cggccgatgc tggcctttct cgtcggctgc gtggtgctgg cgatcagcgc 300 cagctacgag ctgatcgaat ggggcgtcgc gctggccatc ggtcaggacg ccgacgcctt 360 cctcggcacc cagggcgatc cctgggacac gcagtcggac atgttcatgg ccctggtcgg 420 cgcggtctgc cggctgacgc tgctgtcgcg ccggcacgac gccgaaatcg cgcgcctgcc 480 cgccgccggc tgagcgccgc cggccagcgg caactcactg gccggcgacg ctggcgaacg 540 ggcagcgccg ctgccagctc cgccgttcca gcttccggca gcgcgccgaa agtgctgaaa 600 aacgctgttt caaatcaatg acttgggacg gccgctcggt ggtttcccta gatcaaggaa 660 aagcgggcac gcatcgtggg tatgacacag ctcaaagacc gaacccacgg cgaggagccc 720 gatccgatgg agaccttcta cgaagtcatg cgccgccagg gcatctcgcg gcgcagcttc 780 ctcaagtact gctcgctgac ggccacctcg ctcgggctcg cgccgtcgtt cgtgccgcag 840 atcgcgcacg cgatggagac caagccgcgc accccggtgc tctggctgca cggcctggaa 900 tgcacctgct gcagcgagag cttcatccgc agcgcgcacc cgctggcgaa ggacgccgtg 960 ctgtcgatga tctcgctgga ctacgacgac acgctgatgg ccgccgccgg ccaccaggcc 1020 gaggccatcc tcgacgagat catggccaag tacaagggca actacatcct ggccgtcgag 1080 ggcaacccgc cgctcaacga ggacgggatg ttctgcatcc agcggcaagc ccttcctcga 1140 gaagctcaag ccgtcgccgc cgactgcaag gccgtcatcg cctggggctc ctgcgcctcc 1200 tggggttgcg tgcaggccgc caagccgaat ccgacgcagg ccacgccgat ccacaaggtg 1260 atcaccgaca agccgatcat caaggtgccc ggctgcccgc cgatcgccga ggtgatgacc 1320 ggcgtcatca cctacatgct gaccttcgac cgcatccccg agctcgaccg ccagggccgg 1380 ccgaagatgt tctacagcca gcgcatccac gacaagtgct accgccggcc gcacttcgac 1440 gccggccagt tcgtcgagag cttcgacgac gagaacgcgc gcaagggctt ctgcctctac 1500 aaggtcggct gcaagggccc gacgacctac aacgcctgct ccacggtgat gtggaacgaa 1560 ggcacgagct tcccgatcaa ggccggccac ggtgcacggc gctccgagga cggcttctgg 1620 gacaagggct cgttctacga ccgcctgacc aacatccacc agttcggcat cgaggccagc 1680 gccgacaagg tcggcggcac cgcggccggc gtcgtcggtg cggccatcgc cgcgcacgcc 1740 gccgcgtcgg tgatcaagcg cctgtcgcac gacccggacg ccgccgcgcg cgccgagtcg 1800 cgcagctgac cccacacccg aacgagaaca caggagcacc catgggcgcc atcgaaaccc 1860 aaggcttcaa gctcgacgac agcggccgcc gcatcgtcgt cgaccccgtc acgcgcatcg 1920 agggccacat gcgctgcgag gtgaacgtcg acgccaacaa cgtcatccgc aacgccgttt 1980 ccaccggcac gatgtggcgc gggctggagg tcatcctcaa gggccgcgac ccgcgcgacg 2040 cctgggcctt cgtcgagcgc atctgcggcg tctgcaccgg ctgccatgcg ctgaccagcg 2100 tgcgcgccgt cgaggacgcg ctgggcatca ggatcccgaa gaacgcgcac ctcatccgcg 2160 agatgatggc caagacgctg caggtgcacg accacgcggt gcacttctac cacctgcacg 2220 cgctggactg ggtggacgtc gtctcggcgc tgaaggccga cccgaagaag accagcgagc 2280 tgcagcacct ggtgtcgccc tcgcacccgc tgtcctcgcc gggctacttc ccgcgacgtg 2340 gcagaaccgg gctgaagaag ttcgtcgaga gcggccagct cgggcccttc atgaacggct 2400 actggggcag caaggcctac gtgctgccgc ccgaggccaa cctgatggcc gtcacccact 2460 acctggaggc gctggacctg cagaaggaat gggtgaaggt gcacgccatc ttcggcggca 2520 agaacccgca cccgaactac ctcgtcggcg gcgttccctg cgcgatcaac ctcgacggca 2580 acggcgccgc cgggcgcatc aacatggagc ggctgaactt cgtcaaggct cgcatcgacg 2640 agatgatcga gttcaacaag aacgtctacc tgcccgacgt gctggccatc ggcacgatct 2700 acaagcaggc cggctggctg cacggcggcg gcctgtcggc gctgaacgtc gccgactacg 2760 gcacctacga caaggtggcc tacgaccacg ccacgcacca gctgcccggc ggcgtcatcc 2820 tcgacggcaa ctgggacgag atccacgcca tcgacccgcg cgaccccgag caggtgcagg 2880 agttcgtcgc ccacagctgg taccagtacg ccgacgagag caagggcctg cacccctggg 2940 acggcgtcac cgagccgaag ttcgagctcg gcgccaggac caagggcaca cgcaccgcga 3000 tcgaacacat cgacgagagc gccaagtact cgtggatcaa gtcgccgcgc tggcgcggcc 3060 acgccgtcga ggtcggcccg ctgtcgcgct acatcctcgg ctacgcccat gcgctgaagg 3120 gcaacaagta ctgccagcgc gtcaaggagc aggtggactt cgccgccgag gcgatcaacc 3180 acgccatccc caaggccctg ggcctgccgg agacgcagta caccttgaag cagctgctgc 3240 cgacgaccat cggccgcacg ctggcgcgct gcctcgaagg ccagtactgc ggcgagatga 3300 tgctggccga ctaccacgag ctggtggcca acatccgcgc cggcgacacc gccaccgcca 3360 acgtcgagaa gtgggacccg gcgacctggc ccaaggaagc caagggcgtc ggcaccgtcg 3420 ccgcgccgcg cggcatgctg ggccactgga tccgcatcaa ggacggcaag atcgagaact 3480 accagtgcgt cgtgccgacc acctggaacg gcagcccgcg cgacgccaag ggccagatcg 3540 gcgccttcga ggccagcctg ctgggcacgc cgatggtcaa cccggaacag ccggtcgaga 3600 tcctgcgcac gctgcactcc ttcgacccct gcctggcctg ctcgacccac gtgatgagcg 3660 aagacggccg cgaactgacg accgtgaagg tgcgctgata gcgccgcccg acctgaaagg 3720 acacccgatg aagaagctcg tccccgccgt cctgctcgcc gccgccgcga cgcccgcgtt 3780 cgcccacccg ggccacgaca ccacgacgct ggccgccggc ctcgtgcacc cgctgggtct 3840 ggaccacctg ctggcgatgg tcgccgtcgg cctctggtcg gccgcggcct tcacggcggc 3900 cggccgcctc gccggcccgg cgctgttcat ggccgcgctg ctggccggcg ccgtcgccgc 3960 gccggctggg gccatgcgct ggtggaaccg g 3991 // |
|