EBI Dbfetch
ID X51929; SV 1; linear; genomic DNA; STD; MAM; 5732 BP.
XX
AC X51929;
XX
DT 02-APR-1990 (Rel. 23, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Cat ECE1 endogenous retroviral element DNA, partial
XX
KW endonuclease; glycoprotein; long terminal repeat;
KW retrotransposable element; reverse transcriptase; transmembrane protein.
XX
OS Felis silvestris (wild cat)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis.
XX
RN [1]
RP 1-5732
RA Moehring R.;
RT ;
RL Submitted (21-FEB-1990) to the EMBL/GenBank/DDBJ databases.
RL Moehring R., Dept of Genetics, Central Institute of Molecular Biology,
RL Academy of Science GDR, 1115 Berlin-Buch, Robert Raessle str 10, G D R .
XX
RN [2]
RP 1-5732
RA Moehring R., Drescher B., Riedel H., Bauer D., Rohde K., Beyer W.,
RA Rosenthal S.;
RT "The exogenous RD-114 and the related endogenous proviral element ECE1 of
RT domestic cat differ in their env genes.";
RL Arch. Virol. 0:0-0(1990).
XX
CC See for sequence of related retrovirus RD114.
XX
FH Key Location/Qualifiers
FH
FT source 1..5732
FT /organism="Felis silvestris"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9683"
FT CDS <1..3141
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:P31792"
FT /db_xref="HSSP:1MML"
FT /db_xref="InterPro:IPR002156"
FT /db_xref="UniProtKB/Swiss-Prot:P31792"
FT /protein_id="CAB38566.1"
FT /translation="LQDFPQAWAETGGLGRAKCQVPIIIDLKPTAMPVSIRQYPMSKEA
FT HMGIQPHITRFLELGVLRPCRSPWNTPLLPVKKPGTRDYRPVQDLREVNKRTMDIHPTV
FT PNPYNLLSTLSPDRTWYTVLDLKDAFFCLPLAPQSQELFAFEWRDPERGISGQLTWTRL
FT PQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKEACIRGTKHLLREL
FT GDKGYRASAKKAQICQTKVTYLGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGT
FT AGFCRLWIPGFAELAAPLYALTKESAPFTWQEKHQSAFEALKEALLSAPALGLPDTSKP
FT FTLFIDEKQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSA
FT KLTLGQPLTVITPHALEAIVRQTPDRWITNARLTHYQALLLDTDRIQFGPPVTLNPATL
FT LPAPEDQQSAHDCRQVLAETHGTREDLKDQELPDADHSWYTDGSSYIDSGTRRAGAAVV
FT DGHHIIWAQSLPPGTSAQKAELIALTKALELSEGKKANIYTDSRYAFATAHTHGSIYER
FT RGLLTSEGKEIKNKAEIIALLKALFLPRKVAIIHCPGHQKGQDPIATGNRQADQVARQV
FT AVAETLTLTTKLEETNLTTNKYAYTPEDQEEAKAIGAILNQDTKDWEKEGKIVLPRKEA
FT LAMIQQMHAWTHLSNQKLKLLIEKTDFLIPKAGTLIEQVTSACKVCQQVNAGATRVPEG
FT KRTRGNRPGVYWEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQETAHMVAKKILE
FT EIFPRFGLPKVIGSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKE
FT TLTKLTLETGLKDWRRLLSLALLRARNTPNRFGLTPYEILYGGPPPLSTLLNSFSPSDP
FT KTDLQARLKGLQAVQAQIWTPLAELYRPGHPQTSYPFQVGDSVYVRWHRSQGLEPRWKG
FT PYIVLLTTPTAIKVDGIAAWIHASHAKAAPKTPGPETPKTWKLHRSENPLKIRLSRV"
FT mat_peptide <1..1941
FT /note="reverse transcriptase"
FT mat_peptide 1942..3138
FT /note="endonuclease"
FT CDS 3177..5192
FT /product="polyprotein"
FT /db_xref="GOA:P31791"
FT /db_xref="HSSP:1MOF"
FT /db_xref="InterPro:IPR018154"
FT /db_xref="UniProtKB/Swiss-Prot:P31791"
FT /protein_id="CAB38567.1"
FT /translation="MKPPAGMVFLWVLTSLGAGIGAKIVKEGNPHQVYTLTWQIYSQSG
FT EVVWEVQGNHALNTWWPALTPDFCQLAAGLDTWDIPDRSPKNLETSMEGTSQQLTPQGC
FT SKPWKRCALTERDFYVCPRDNRDRATAHRCGGYEEYFCSAWGCETTGDAYWQPTSTWDL
FT ITITRNYTKPDSCDDRVERERKTSRHWRDPLSLPLKITFTDSGKRALGWQTGYTWGLRW
FT YLPGKDRGIILKIKLKIDTITQTVGPNLVLADQKTPVQLAIPVQPPRAPTQTPRVNPVN
FT STLSPSLGYPAPAPGPRPPYPTSPSRPGTGDRLLNLVQGVYLTLNLTAPNQTQDCWLCL
FT TAKPPYYQGVAIIGNFTNHTNAPLRCSTTPRHGLTLTEVTGYGLCIGKIPPSHQNLCSQ
FT TVPSVGQGPYYLTAPNGTYWVCNTGLTPCISLQILNDTADYCILIELWPKIFYHDSEYI
FT YGHYEPGGRFRRDPVSLTVALLLGGLTMGSLAAGIGTGTAALIETNQFKQLQIAMHSDI
FT QALEESISALERSLISLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDS
FT MAKLRERFKQRQKLFESQQGWFEGWYNKSPWFTTLVSSLMVPLILLLLILMFGPCILNH
FT LLQFIRERLSVIQALVLTQQYHQLRQFDAERPDAIE"
FT mat_peptide 3177..4586
FT /note="glycoprotein gp70"
FT mat_peptide 4587..5189
FT /note="transmembrane protein p15E"
FT misc_feature 4782..4841
FT /note="put. immunosupressive peptide"
FT LTR 5228..5732
FT repeat_region 5228..5606
FT /note="U3 region"
FT CAAT_signal 5541..5545
FT TATA_signal 5579..5585
FT repeat_region 5607..5663
FT /note="R region"
FT polyA_signal 5645..5650
FT repeat_region 5664..5732
FT /note="U5 region"
XX
SQ Sequence 5732 BP; 1617 A; 1615 C; 1302 G; 1198 T; 0 other;
ctgcaggact ttccccaggc ctgggcagaa acgggagggc tcggtcgagc caaatgccaa 60
gtcccaatca taattgacct aaagcccacg gcaatgcctg tgtctatcag gcagtatccc 120
atgagcaagg aggctcatat gggcattcag ccacacatta ctagatttct agagcttggg 180
gtcctgcgac cttgccgctc accttggaat acccctctct taccagtaaa aaaacctggt 240
actcgggact acaggcccgt ccaagactta agggaagtca acaaaaggac tatggatatc 300
catcctacgg tccccaatcc ctataacttg ctcagcaccc tgagcccaga ccgcacctgg 360
tacacagtac tggacctaaa agatgcattc ttttgcttac ccttggcccc ccagagccag 420
gaactgtttg ctttcgaatg gagggaccct gaaagaggaa tctcaggcca attaacctgg 480
acccgcttac cccaagggtt caaaaactcc cccactctct ttgatgaggc tctccacagg 540
gacctaactg acttccggac tcaacaccca gaagtaactc tactccaata tgtggatgac 600
cttcttctgg ccgcccccac aaaggaagcc tgcatacgag gtaccaaaca tctgcttcgg 660
gaattgggag acaaaggata ccgggcatcc gccaagaagg cccagatttg ccaaaccaag 720
gtaacctact tggggtacat actgagtgag gggaaaagat ggctcacccc tgggcgaata 780
gaaactgtgg ctcacattcc gccgccccag aaccccagag aggtacgtga attcctggga 840
actgctgggt tctgtcgctt atggatacct gggttcgctg agctagccgc ccccctctat 900
gccctcacga aagagagtgc acccttcacc tggcaggaaa aacatcagtc agcctttgag 960
gccctaaaag aggccctcct ctccgccccg gctctcgggt tgccagacac ctccaagccc 1020
tttaccctct tcatagacga gaaacaagga attgccaaag gagttctaac ccaaaaatta 1080
gggccctgga agaggccagt agcatacctg tccaaaaagt tggaccctgt ggcagcgggg 1140
tggcccccat gtcttcgtat catggcagcc actgctatgc tggtcaagga ctctgccaaa 1200
ttaacccttg gacagccact aactgttatc accccgcatg ctttagaggc catagtgcgg 1260
cagaccccgg accgatggat aaccaacgca cgcctaactc actaccaggc cctcctactg 1320
gacacagacc gcatccaatt tggacctccg gttaccttga accctgccac gttgctaccg 1380
gcaccagaag accaacagag cgcacacgat tgccggcaag tactggctga gacccatggg 1440
acacgggaag accttaaaga tcaagagctc ccagatgcgg atcactcttg gtatacggac 1500
gggagcagtt acatcgactc aggtacccgg agggcgggag cagcggtagt agatggccac 1560
cacatcatat gggcacaatc actacctcct ggcacgtctg cacaaaaggc cgagctgata 1620
gcgctcacca aggccctaga actatccgaa gggaaaaagg ctaacatata cacagatagc 1680
cgatatgcct ttgcaacggc tcatacacac gggagtattt atgaaagaag gggcctacta 1740
acctcagaag gcaaagaaat taaaaacaaa gctgaaatca ttgcattatt aaaggccctt 1800
tttcttcccc gaaaagtagc cataattcat tgccccgggc atcagaaagg acaagaccca 1860
attgcaacag gaaatagaca ggcagaccaa gtagccaggc aagtcgctgt ggcagaaacg 1920
ttgactttga ccacaaaact tgaagaaacc aatcttacga ccaacaaata tgcttacacc 1980
ccagaagacc aggaagaggc aaaggccata ggggctatac tgaatcagga cactaaagac 2040
tgggaaaaag aaggaaagat agtccttccc cgaaaggaag ccctggcaat gatccaacaa 2100
atgcacgcct ggacacattt aagtaatcag aagctgaagt tactgattga aaaaactgac 2160
ttcttaatcc ctaaggcagg caccctcata gaacaggtaa cctccgcctg taaggtctgt 2220
caacaggtaa acgctggggc tacccgagtg ccggaaggaa aacggactcg tggtaaccgc 2280
ccaggagtct attgggaaat agactttact gaagtaaagc ctcactatgc ggggtataag 2340
tacctattag tgtttgtaga caccttttca ggatgggtag aagcctaccc cacccgacaa 2400
gaaacggcac acatggtagc caagaagatt ttagaagaaa tcttccccag atttggactt 2460
cccaaggtaa tcgggtcaga taacgggccg gccttcgttt cccaggtaag tcaggggctc 2520
gccaggacac tggggattaa ttggaaatta cactgtgcat ataggcccca gagctcagga 2580
caggtagaaa gaatgaatag aacaataaaa gagaccctta ctaaattgac cttagagact 2640
ggcttaaaag attggagacg cctcctatct ctggctttgt taagagccag aaatacgccc 2700
aaccgtttcg ggctcacccc atatgaaatc ctttatgggg gacccccccc tttgtcaacc 2760
ttgctcaatt ccttctcccc ctccgatcct aagactgatt tacaagcccg actaaaaggg 2820
ctgcaagcgg tgcaggccca aatctggaca cccctggccg aactgtaccg gccaggacat 2880
ccacaaacta gctacccatt tcaggtagga gactccgtgt acgtccggtg gcaccgctct 2940
caaggattgg agcctcgttg gaagggacct tacatcgtcc tgctgaccac gcccaccgcc 3000
ataaaggttg acgggatcgc cgcctggatt cacgcatcgc acgccaaggc agccccaaaa 3060
acccctggac cggaaactcc caaaacctgg aagctccacc gttcggagaa ccctcttaag 3120
ataagactct cccgtgtctg actgctaatc caccctgtcc cctgcacaaa cccaaaatga 3180
aacccccagc aggaatggtc tttctgtggg tcctcacaag cttgggggcg ggaattggag 3240
ctaaaattgt caaagagggg aacccacatc aggtttacac cttgacttgg caaatctact 3300
cccagagtgg ggaagttgtc tgggaggtcc aaggtaacca tgcgcttaac acttggtggc 3360
ccgcacttac ccctgatttt tgccagctgg cagctggatt agacacttgg gatatcccag 3420
atagaagccc caaaaatcta gagaccagca tggagggaac ctcccagcag ttgactcctc 3480
aaggatgcag taaaccctgg aaaagatgtg cattgaccga gagagacttc tatgtctgtc 3540
ctcgagacaa tagagatagg gccactgcac accgatgtgg gggatatgaa gaatatttct 3600
gctcggcatg gggctgcgaa accacaggcg atgcctactg gcagcctacc tctacctggg 3660
acttaattac tattacaaga aattacacca aacctgacag ttgcgacgat agagtagaga 3720
gggaaagaaa aacgagtcgt cactggagag atcccctgtc cctacctctt aaaattacct 3780
ttacagattc aggaaaacgg gctctcggat ggcagacggg ctatacatgg ggactccgat 3840
ggtatctacc gggtaaagat agaggaatta ttctaaaaat aaaattaaaa atagatacca 3900
tcacccaaac cgtaggcccc aacctagtat tggccgatca gaagaccccg gtccagctag 3960
ccatcccagt ccagccaccg agggccccaa ctcagacacc gagggtcaac cctgttaatt 4020
ccactctaag ccccagtcta ggatacccgg ccccagcgcc aggcccacgg cctccctacc 4080
cgacttcccc ctctcgaccg ggcacaggag ataggctcct aaaccttgta caaggggtat 4140
acttaactct caacctcacg gccccaaatc aaactcagga ctgttggctc tgcctaacgg 4200
ctaaaccccc ttactatcag ggagttgcta taattgggaa ctttactaac catacgaatg 4260
ccccactgag atgtagcacc acacctcgac acggcctcac tttaactgaa gtcaccggtt 4320
atggcctatg tattgggaaa attccaccct cacaccagaa tctctgtagt cagaccgtac 4380
catctgtcgg gcagggtccc tattatttga ccgctcccaa cggaacgtac tgggtctgta 4440
acaccggact cacgccatgc atctcgctcc agatactcaa tgatactgcc gactattgca 4500
tcctaattga actttggcca aaaatcttct accatgactc agaatatatt tatggccact 4560
acgaacccgg cgggagattc cggagagacc cagtttccct caccgtagca ctgctcctag 4620
ggggattaac tatgggaagc ttagcagctg gcatagggac aggtaccgca gctctcatag 4680
aaactaatca gttcaagcag ttacaaatcg ctatgcattc tgacatacag gcactagaag 4740
aatccatctc ggcactagaa agatccctaa tctccctctc cgaagtggtt ttacaaaatc 4800
ggaggggact tgacctgttg ttcctacaag aaggcgggtt atgtgctgcc ctcaaagaag 4860
agtgctgctt ctatgctgat cacaccggaa tagtaaggga cagcatggcc aagctgaggg 4920
agagattcaa acaaagacaa aagctgttcg aatctcagca aggctggttt gaggggtggt 4980
ataacaaatc cccctggttt accactttag tctcctccct catggtccct ttaatactcc 5040
tactattaat actgatgttc ggtccctgca tccttaacca cttgttacaa ttcataagag 5100
aaagactctc tgtcatccag gccttggtct taactcaaca gtaccaccaa ctaagacaat 5160
ttgacgcaga aaggccagat gcaattgaat gaaaggtttc attcgacgcc aaaagaaaat 5220
gggggaatga gagacccctg gcttagctta ataaaacacc cccaccctat cttcggcttt 5280
gtaaacgcct cacttgcaga gcttgtactt ccactattaa caagcaggat atctgcggtt 5340
agacagtcgg gaccccggga gagctgtaca ggttgctaca taaataaccg ctttgctctc 5400
gcttctgtaa ccttcttacg cgcccaaccc tagccgttcg caaccccggg ctccaagttg 5460
catcagccaa aggaaacttc atttcccaag cttccccggg acgaaattac ccacaaccct 5520
aaccaccacc gagcagagag cctaccacca gcctgtatgc aaatgtaact caaaatggta 5580
taaaagacct gtaaccccgt ttatcggctc tcccgctttc taacactggg agccctggtg 5640
caccagtaaa gactctctgc cgaagtcgga gtgccgtgtg gttctttgcg ccaactctca 5700
ttccataagg cctaggagca taattcctaa ca 5732
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