 |
|
EBI DbfetchID X06253; SV 1; linear; genomic DNA; STD; PRO; 3360 BP. XX AC X06253; XX DT 22-NOV-1988 (Rel. 18, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Rhizobium leguminosarum dctB and dctD genes involved in C4-dicarboxylate DE transport XX KW C4-dicarboxylate transport; dctB gene; dctD gene; membrane protein; KW receptor; regulatory protein; transmembrane protein. XX OS Rhizobium leguminosarum OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; OC Rhizobium/Agrobacterium group; Rhizobium. XX RN [1] RP 1-3360 RX DOI; 10.1093/nar/15.19.7921 RX PUBMED; 3671068. RA Ronson C.W.; RT "Deduced products of C4-dicarboxylate transport regulatory genes of RT Rhizobium leguminosarum are homologous to nitrogen regulatory gene RT products"; RL Nucleic Acids Res. 15(19):7921-7934(1987). XX CC Data kindly reviewed (02-Mar-1989) by Ausubel F.M. XX FH Key Location/Qualifiers FH FT source 1..3360 FT /organism="Rhizobium leguminosarum" FT /mol_type="genomic DNA" FT /clone="pPN103, pPN104" FT /db_xref="taxon:384" FT CDS 133..2001 FT /transl_table=11 FT /note="dctB protein (AA 1-622)" FT /db_xref="GOA:P10047" FT /db_xref="InterPro:IPR003594" FT /db_xref="InterPro:IPR003661" FT /db_xref="InterPro:IPR004358" FT /db_xref="InterPro:IPR005467" FT /db_xref="InterPro:IPR009082" FT /db_xref="InterPro:IPR017055" FT /db_xref="UniProtKB/Swiss-Prot:P10047" FT /protein_id="CAA29595.1" FT /translation="MHKSAMSVSQKLWPSLPLQHRIRRMWWTYAALAFLAVVASLWTSG FT EIGQHRAEAALEEQARMDVTLNAALLRTVLEKYRALPFVLSQDTALAAALVGNDAGTFE FT RLSQKLEILAAGTKAAVIYVIDKDGIAVSASNWREPTSFVGNDYRFREYFQGAVERGQA FT EHFALGTVSKKPGLYISQRISGSNGLLGVVVVKVEFDDVEADWNASGTPSYVVDERGIV FT LITSLPSWRFMTIGRIAEDRLTAIRESLQFGAAPLQPLPLDMVRNLGEGLDVVEIVMPG FT DAGKTRFLDVATSVPATGWHLQHLVALGPSVDAGIREARMLALLILLPLLAGAAFLLRR FT RHTIALRISSEQQAREELERRVVERTLDLSQARDRLQAEIIGHKSTEQKLQAVQQDLVQ FT ANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLDRGQTAPAGENLESIAALTERIG FT SITEELKTFARKGRGSAEPTGLKDVIEGAVMLLRSRFAGRMDTLDIDLPPDELQVMGNR FT IRLEQVLINLLQNALEAVAPKAGEGRVEIRTSTDAGMVTVTVADNGPGIPTEIRKGLFT FT PFNTSKESGLGLGLVISKDIVGDYGGRMDVASDSGGTRFIVQLRKA" FT RBS 2000..2003 FT /note="put. rRNA binding site" FT CDS 2006..3352 FT /transl_table=11 FT /note="dctD protein (AA 1-448)" FT /db_xref="GOA:P10046" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR002078" FT /db_xref="InterPro:IPR002197" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR011006" FT /db_xref="UniProtKB/Swiss-Prot:P10046" FT /protein_id="CAA29596.1" FT /translation="MDTLMPVALIDDDKDLRRATAQTLELAGFSVSAYDGAKAALADLP FT ADFAGPVVTDIRMPEIDGLQLFATLQGMDVDLPVILMTGHGDIPMAVQAIQDGAYDFIA FT KPFAADRLVQSVRRASEKRRLVLENRMLRKAAEDAQENLPLIGQTPVMENLRNILRHIA FT DTDVDVLVAGETGSGKEVVAQILHQWSHRRKGNFVALNCGALPETVIESELFGHERGAF FT TGAQKRRTGRIEHASGGTLFLDEIESMPAATQVKMLRVLEMREITPLGTNEVRPVNLRV FT VAAAKIDLGDPAVRGDFREDLYYRLNVVTISIPPLRERRDDIPLLFSHFAARAAERFRR FT DVPPLSPDVRRHLASHTWPGNVRELSHYAERVVLGVEGGGAAAVPPQPTGATLPERLER FT YEAEIIRDTLSANDGDVRRTIEALGIPRKTFYDKLQRHGINRGGYSSRK" XX SQ Sequence 3360 BP; 663 A; 1047 C; 1050 G; 600 T; 0 other; cgcaatcgcc gtgccagttt taagtcgcca accaaccgat tgaatttatt aatgaaaaat 60 ttacgagact gctaacaact aactaagcaa tgcggaaatc cgcacaaatc catttgcgtt 120 tcgtgcagaa aaatgcacaa atccgccatg tccgtgtcgc agaaattgtg gccttccctg 180 cccctgcaac accgcatccg ccggatgtgg tggacctatg ccgcgctcgc cttcctcgcg 240 gtcgtcgcaa gcctttggac cagcggcgag atcggccagc accgggcgga ggctgccctc 300 gaggagcagg cccgcatgga tgtgacgctg aatgcggcgt tgctgcgcac ggttcttgaa 360 aaataccggg cgcttccctt cgtgctgtcg caggacaccg cgctcgccgc ggccctggtg 420 ggaaacgatg ccggcacgtt cgagcggctc agtcagaagc tcgaaatact ggcggcgggc 480 acgaaggccg ccgtcatcta tgtcatcgac aaggacggca tcgcggtttc ggccagcaac 540 tggcgcgagc cgacgagctt cgtcggcaat gactaccgct tccgggagta ttttcagggg 600 gcggtcgaac gagggcaggc cgagcacttc gcgctcggca cggtcagcaa gaaaccgggt 660 ctttatatct cgcagcggat ttcgggcagc aatggcttgc tgggtgtcgt tgtggtcaag 720 gtcgaattcg acgacgtcga ggcggattgg aacgcctccg gcaccccgtc ctacgtcgtt 780 gacgagcgtg gcattgtcct catcaccagt cttccatcat ggcggttcat gacgatcggc 840 cggatcgccg aagatcgcct gacagcgatc cgcgaaagcc tccaattcgg cgctgcgcca 900 cttcaacccc tgcccctcga catggtccga aacctcggcg aagggctcga tgtcgtcgag 960 atcgtcatgc ccggcgatgc cgggaaaacc aggtttctcg atgtcgcaac gtcggtgccg 1020 gcgaccggat ggcatttgca gcatctggtg gcgttggggc cgtccgtcga tgcggggatt 1080 cgcgaagccc gcatgctggc attgctcata ctcttgccac tgctggccgg agcagccttc 1140 ctcttgcgcc gccgccatac gatcgccctg cggatctcga gcgaacagca agcacgagag 1200 gaactggaac ggcgggtagt cgagcggacg ctggatctca gccaggcgcg agaccggctg 1260 caggctgaaa tcatcggcca caagagcacg gagcaaaagc tgcaggcggt gcagcaggat 1320 ctggtgcagg ccaatcggct ggccatcctg ggccaggtag ccgccggcgt cgctcatgag 1380 atcaaccagc cggtggcgac catccgtgcc tatgcggata atgcccgcac cttcctcgat 1440 cgcggccaga ctgcgcctgc cggcgaaaat ctcgagagca ttgcggcgct gacggaacgc 1500 ataggttcga tcaccgagga gctgaagacc tttgcccgca agggccgcgg cagcgccgaa 1560 ccaacaggat tgaaagacgt catcgagggc gcggtgatgc tgttgcgcag ccggtttgcc 1620 ggccgcatgg atacgctcga catcgacctg ccgcccgacg aactgcaggt gatgggaaac 1680 cggattcgtc tcgagcaggt cctcatcaac ctgcttcaga acgccctgga ggcggtggcg 1740 ccgaaggccg gagagggtcg cgtcgagatc agaacatcaa ctgacgcggg gatggtaacg 1800 gtgacagtcg ccgacaacgg ccccggcatt cccacggaaa tccgcaaagg cttgttcacg 1860 ccgttcaata cctcgaagga aagcggtctc ggccttggcc tcgttatctc caaggatatc 1920 gtcggcgact acggcggccg gatggacgtt gcaagcgaca gcggtggtac ccggtttatc 1980 gttcagctga ggaaggcttg aggtcatgga cacactgatg cccgttgcgc tgatcgacga 2040 cgacaaggat ctgcgccgtg ccaccgcgca gacgctcgaa ctcgccggat tttccgtttc 2100 cgcctatgac ggtgcgaaag ccgcgctggc ggacctgccg gcggactttg ccggccccgt 2160 cgtcaccgat atccgcatgc ccgagatcga cggactgcag ctcttcgcca cgctgcaagg 2220 gatggatgtc gacctgccgg tgatcctgat gaccggccac ggcgatattc ccatggccgt 2280 tcaggcgatt caggacggcg cctatgattt catcgccaag cccttcgcag ccgatcggct 2340 cgtgcagagc gtgcgtcgcg caagcgagaa gcgccggctt gttctggaga accgcatgct 2400 gcggaaagca gccgaagatg cgcaggagaa tttgccgctg atcggccaga cgcctgtgat 2460 ggaaaacctc agaaacattc ttcgccacat cgccgatacc gatgtggacg tactcgtcgc 2520 cggcgaaacg ggcagcggca aggaagtggt tgcccagatc ctgcatcagt ggagccaccg 2580 ccggaaaggc aatttcgtgg ccctgaactg tggcgccctg cccgaaaccg tcatcgaaag 2640 cgaactgttc ggccacgagc gcggcgcctt taccggcgcc cagaagcgcc gcacgggccg 2700 catcgaacat gcaagcggcg gcacgctgtt cctcgacgag atcgaaagca tgccggccgc 2760 cacgcaggtc aagatgctga gggtgctgga gatgcgcgag atcacgccgc tcggcaccaa 2820 tgaggtgcgc cccgtcaatc ttcgcgtcgt cgcggctgcc aagatcgacc tcggggaccc 2880 cgcggttcgc ggcgattttc gcgaggatct ctattacagg ctgaatgtcg tgacgatctc 2940 cattccgccg ctgagagaac ggcgggacga tattccgctg ctgttttccc acttcgccgc 3000 tcgcgccgcg gagcgcttcc gtcgcgatgt cccgccgctt tcacctgatg tgcggcggca 3060 tctcgcctcg cacacatggc caggcaatgt ccgcgagctc tcgcattatg ccgaacgcgt 3120 ggtgcttggc gtggaaggcg gcggagcggc agcggtccct cctcagccga cgggtgcgac 3180 gctccccgaa cggctggaac gctacgaggc ggagatcatc cgcgacacgc tgtcagccaa 3240 tgacggcgac gtgcgccgca ccatcgaggc gctcggcatt ccgagaaaga cgttttatga 3300 caaacttcag cgccacggca tcaaccgggg cggctatagc tcgcgcaagt aatccgtgac 3360 // |
|