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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   X05811; SV 1; linear; genomic DNA; STD; PRO; 1767 BP.
XX
AC   X05811;
XX
DT   02-APR-1988 (Rel. 15, Created)
DT   21-MAR-1995 (Rel. 43, Last updated, Version 2)
XX
DE   Streptomyces coelicolor dagA gene for extracellular agarase
XX
KW   agarase; dagA gene.
XX
OS   Streptomyces coelicolor
OC   Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
OC   Streptomycineae; Streptomycetaceae; Streptomyces.
XX
RN   [1]
RP   1-1767
RX   DOI; 10.1007/BF00329843
RX   PUBMED; 17165236.
RA   Buttner M.J., Fearnley I.M., Bibb M.J.;
RT   "The agarase gene (dagA) of Streptomyces coelicolor A3(2): nucleotide
RT   sequence and transcriptional analysis";
RL   Mol. Gen. Genet. 209(1):101-109(1987).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1767
FT                   /organism="Streptomyces coelicolor"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:1902"
FT   promoter        556..561
FT                   /note="pot.-35 region (p4 promotor)"
FT   promoter        580..585
FT                   /note="pot.-10 region (p4 promotor)"
FT   precursor_RNA   592..>1767
FT                   /note="primary transcript (P4)"
FT   precursor_RNA   593..>1767
FT                   /note="alternate transcript (P4)"
FT   precursor_RNA   687..>1767
FT                   /note="primary transcript (P3)"
FT   precursor_RNA   733..>1767
FT                   /note="primary transcript (P2)"
FT   precursor_RNA   779..>1767
FT                   /note="primary transcript (P1)"
FT   RBS             798..803
FT                   /note="pot.rRNA binding site"
FT   CDS             811..1740
FT                   /transl_table=11
FT                   /note="precursor polypeptide (AA -30 to -1)"
FT                   /db_xref="GOA:P07883"
FT                   /db_xref="InterPro:IPR000757"
FT                   /db_xref="InterPro:IPR006311"
FT                   /db_xref="InterPro:IPR008263"
FT                   /db_xref="InterPro:IPR008985"
FT                   /db_xref="InterPro:IPR013320"
FT                   /db_xref="InterPro:IPR016287"
FT                   /db_xref="InterPro:IPR017909"
FT                   /db_xref="UniProtKB/Swiss-Prot:P07883"
FT                   /protein_id="CAA29257.1"
FT                   /translation="MVNRRDLIKWSAVALGAGAGLAGPAPAAHAADLEWEQYPVPAAPG
FT                   GNRSWQLLPSHSDDFNYTGKPQTFRGRWLDQHKDGWSGPANSLYSARHSWVADGNLIVE
FT                   GRRAPDGRVYCGYVTSRTPVEYPLYTEVLMRVSGLKLSSNFWLLSRDDVNEIDVIECYG
FT                   NESLHGKHMNTAYHIFQRNPFTELARSQKGYFADGSYGYNGETGQVFGDGAGQPLLRNG
FT                   FHRYGVHWISATEFDFYFNGRLVRRLNRSNDLRDPRSRFFDQPMHLILNTESHQWRVDR
FT                   GIEPTDAELADPSINNIYYRWVRTYQAV"
FT   sig_peptide     811..900
FT                   /note="put.signal peptide (AA -30 to -1)"
FT   mat_peptide     901..1737
FT                   /note="mature agarase (AA 1-279)"
XX
SQ   Sequence 1767 BP; 371 A; 519 C; 566 G; 311 T; 0 other;
     gatccggtcg aagactcctg tctgccggca ttccgaatcg tctgtccacg tccgcaggag        60
     gccacgacac gctctggccg ggcagtcgtc gtggtgggtg tcggcgctgg gggagaggtg       120
     gtcgtgtgaa gccttcccgt gatcgtggac acctggagac tgagatgtga gagcccagag       180
     gaagcagtgc caggtgggaa gcaagtacac gaagcggtac ttggaggagt acaagcggga       240
     cgcaatcgag ctcgtgcggt cgtcgggccg gacggtgacc gaggccgccc gggagctcgg       300
     gatcagccgg agtgaaccgt tccaggttcg gtacgggttc ggtagagact tcagtcggac       360
     tccagagacg aggggacgat gcgtcggggc ttcggcgggg catcctcacc tgccacggcg       420
     ggccctgggg atgccgtgca caggaaggcc ggcttgatga atcgtgaccg gcgcgacggg       480
     gcgagtgacc gaggtcgccg ctggatcaca gtcgggcacg gcacgaaatt ctgggaacta       540
     ctgcagccgt accgattgtc accctgcgac actccgctgt agcattcggg aaaccggttc       600
     acctcattga atgatcaggc gagcgaaagc ccagaaactt acctcctgga gcctagctcc       660
     tcctgcgccg tggaatgatc gtgccacgtg ggcgttccgg aactttttgc acgcacgcga       720
     gctctcgaat tttggcgccc agggtctgcg gaagtcattg ccaaatataa gattcttcag       780
     ccaggcggga atcgaagaag gagaacgatc gtggtcaacc gacgtgatct catcaagtgg       840
     agtgccgtcg cactcggagc gggtgcgggg ctcgcgggtc ccgcacccgc cgctcatgcc       900
     gcagacctcg aatgggaaca gtaccccgtg ccggccgccc ctggcggaaa caggtcctgg       960
     cagcttctcc ccagccattc ggacgacttc aactacaccg gcaagcctca aaccttcagg      1020
     ggcagatggc tggaccagca caaggatggc tggtcgggcc cggccaacag cctctacagt      1080
     gcgcgccatt cctgggtggc tgacggaaat ctcatcgtcg agggccgcag ggcgccggac      1140
     gggagggtct actgcggcta cgtgacctcc cgcaccccag tcgagtaccc tctctatacc      1200
     gaagtactca tgcgtgtgag cgggctgaag ctctcatcga atttctggct cctgagcaga      1260
     gacgacgtca acgagattga cgtgatcgaa tgctacggca acgagtcatt gcacggaaag      1320
     cacatgaaca ccgcctacca catattccag cggaacccct tcactgaact ggcgagaagc      1380
     cagaaggggt atttcgcaga tgggagctac gggtacaatg gtgagactgg gcaggtgttt      1440
     ggggacggcg ccgggcaacc tcttcttcgg aatggattcc accgctacgg cgtgcactgg      1500
     ataagcgcca ccgaattcga tttctacttc aacggcaggt tggtgcgccg gctgaaccgg      1560
     tcgaacgacc tcagggaccc ccggagccgg ttcttcgacc agccaatgca tctgatcctc      1620
     aacaccgaga gtcatcagtg gcgcgtcgac cgaggtatcg aacccacgga cgcggaactc      1680
     gcagacccca gcatcaacaa catctactac cgctgggtca ggacgtatca ggccgtgtag      1740
     gtcagcacct cacggaacgg aagattt                                          1767
//
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