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EBI DbfetchID X05399; SV 1; linear; genomic RNA; STD; VRL; 6797 BP. XX AC X05399; XX DT 29-NOV-1987 (Rel. 14, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Newcastle disease virus (NDV) mRNA for L protein XX KW L protein; unidentified reading frame. XX OS Newcastle disease virus OC Viruses; ssRNA negative-strand viruses; Mononegavirales; Paramyxoviridae; OC Paramyxovirinae; Avulavirus. XX RN [1] RP 1-6797 RX DOI; 10.1093/nar/15.10.3961 RX PUBMED; 3035486. RA Yusoff K., Millar N.S., Chambers P., Emmerson P.T.; RT "Nucleotide sequence analysis of the L gene of Newcastle disease virus: RT homologies with Sendai and vesicular stomatitis viruses"; RL Nucleic Acids Res. 15(10):3961-3976(1987). XX CC Data kindly reviewed (05-NOV-1987) by EMMERSON P.T. XX FH Key Location/Qualifiers FH FT source 1..6797 FT /organism="Newcastle disease virus" FT /strain="Beaudette C" FT /mol_type="genomic RNA" FT /db_xref="taxon:11176" FT CDS 9..161 FT /note="ORF (AA 1-50)" FT /db_xref="UniProtKB/TrEMBL:Q84210" FT /protein_id="CAA28984.1" FT /translation="MRYKAKQLMVNSTGRTWRAPVLKGQSIRLSYQSHTCLHHWSSTNY FT FITGN" FT misc_feature 45..55 FT /note="semi-conserved 11-nucleotide start signal" FT CDS 56..6670 FT /note="L protein (AA 1-2204)" FT /db_xref="GOA:P11205" FT /db_xref="InterPro:IPR001016" FT /db_xref="InterPro:IPR014023" FT /db_xref="InterPro:IPR016269" FT /db_xref="UniProtKB/Swiss-Prot:P11205" FT /protein_id="CAA28985.1" FT /translation="MASSGPERAEHQIILPESHLSSPLVKHKLLYYWKLTGLPLPDECD FT FDHLILSRQWKKILESASPDTERMIKLGRAVHQTLNHNSRITGVLHPRCLEELASIEVP FT DSTNKFRKIEKKIQIHNTRYGELFTRLCTHIEKKLLGSSWSNNVPRSEEFNSIRTDPAF FT WFHSKWSTAKFAWLHIKQIQRHLIVAARTRSAANKLVMLTHKVGQVFVTPELVIVTHTN FT ENKFTCLTQELVLMYADMMEGRDMVNIISTTAVHLRSLSEKIDDILQLIDALAKDLGNQ FT VYDVVSLMEGFAYGAVQLLEPSGRFAGHFFAFNLQELKDILIGLLPNDIAESVTHAIAT FT VFSGLEQNQAAEMLCLLRLWGHPLLESRIAAKAVRSQMCAPKMVDFDMILQVLSFFKGT FT IINGYRKKNAGVWPRVKVDTIYGKIIGQLHADSAEISHDIMLREYKSLSALEFEPCIEY FT DPVTNLSMFLKDKAIAHPNDNWLASFRRNLLSEDQKKHVKEATSTNRLLIEFLESNDFD FT PYKEMEYLTTLEYLRDDDVAVSYSLKEKEVKVNGRIFAKLTKKLRNCQVMAEGILADQI FT APFFQGNGVIQDSISLTKSTLAMSQLSFNSNKKRITDCKERVSSNRNHDPKSKNRRRVA FT TFITTDLQKYCLNWRYQTIKLFAHAINQLMGLPHFFEWIHLRLMDTTMFVGDPFNPPSD FT PTDCDLSRVPNDDIYIVSARGGIEGLCQKLWTMISIAAIQLAAARSHCRVACMVQGDNQ FT VIAVTREVRSDDSPEMVLTQLHQASDNFFKELIHVNHLIGHNLKDRETIRSDTFFIYSK FT RIFKDGAILSQVLKNSSKLVMVSGDLSENTVMSCANIASTVARLCENGLPKDFCYYLNY FT IMSCVQTYFDSEFSYNNNSHPDLNQSWIEDISFVHSYVLTPAQLGGLSNLQYSRLYTRN FT IGDPGTTAFAEIKRLEAVGLLSPNIMTNILTRPPGNGDWASLCNDPYSFNFETVASPNI FT VLKKHTQRVLFETCSNPLLSGVHTEDNEAEEKALAEFLLNQEVIHPRVAHAIMEASSVG FT RRKQIQGLVDTTNTVIKIALTRRPLGIKRLMRIVNYSSMHAMLFRDDVFSSNRSNHPLV FT SSNMCSLTLADYARNRSWSPLTGGRKILGVSNPDTIELVEGEILSVSGGCTRCDSGDEQ FT FTWFHLPSNIELTDDTSKNPPMRVPYLGSKTQERRAASLAKIAHMSPHVKAALRASSVL FT IWAYGDNEVNWTAALTIAKSRCNINLEYLRLLSPLPTAGNLQHRLDDGITQMTFTPASL FT YRCHLTFTYPMILKGYSLKKESKRGMWFINRVMLLGLSLIESIFPMTTTRTYDEITLHL FT HSKFSCCIREAPVAVPFELLGVAPELRTVTSNKFMYDPSPVSEGDFARLDLAIFKSYEL FT NLESYPTIELMNILSISSGKLIGQSVVSYDEDTSIKNDAIIVYDNTRNWISEAQNSDVV FT RLFEYAALEVLLDCSYQLYYLRVRGLDNIVLYMGDLYKNMPGILLSNIAATISHPVIHS FT RLHAVGLVNHNGSHQLADTDFIEMSAKLLVSCTRRVISGLYSGNKYDLLFPSVLDDNLN FT EKMLQLISRLCCLYTVLFATTREIPKIRGLSAEEKCSVLTEYLLSDAVKPLLSPDQVSS FT IMSPNIITFPANLYYMSRKSLNLIREREDKDSILALLFPQEPLLEFPSVQDIGARVKDP FT FTRQPAAFLQELDLSAPARYDAFTLSQIHPELTSPNPEEDYLVRYLFRGIGTASSSWYK FT ASHLLSVPEVRCARHGNSLYLAEGSGAIMSLLELHVPHETIYYNTLFSNEMNPPQRHFG FT PTPTQFLNSVVYRNLQAEVTCKDGFVQEFRPLWRENTEESDLTSDKAVGYITSAVPYRS FT VSLLHCDIEIPPGSNQSLLDQLAINLSLIAMHSVREGGVVIIKVLYAMGYYFHLLMNLF FT APCSTKGYILSNGYACRGDMECYLVFVMGYLGGPTFVHEVVRMAKTLVQRHGTLLSKSD FT EITLTRLFTSQRQRVTDILSSPLPRLIKYLRKNIDTALIEAGGQPVRPFCAESLVSTLA FT DITQITQIIASHIDTVIRSVIYMEAEGDLADTVFLFTPYNLSTDGKKRTSLKQCTRQIL FT EVTILGLRVEDLNKIGDVISLVLKGMISMEDLIPLRTYLKHSTCPKYLKAVLGITKLKE FT MFTDTSVLYLTRAQQKFYMKTIGNAVKGYYSNCDS" FT misc_feature 6738..6748 FT /note="pot.polyA signal" XX SQ Sequence 6797 BP; 2011 A; 1468 C; 1512 G; 1806 T; 0 other; aagtggcaat gagatacaag gcaaaacagc tcatggtaaa tagtacgggt aggacatggc 60 gagctccggt cctgaaaggg cagagcatca gattatccta ccagagtcac acctgtcttc 120 accattggtc aagcacaaac tactttatta ctggaaatta actgggctac cgcttcctga 180 tgaatgtgac ttcgaccacc tcattctcag cagacaatgg aaaaaaatac ttgaatcggc 240 ctctcctgat actgagagaa tgataaaact cggaagggca gtacaccaaa ctctcaacca 300 caattctaga ataaccggag tactccaccc caggtgttta gaagaactgg ctagtattga 360 ggtccctgat tcaaccaaca aatttcggaa gattgagaag aagatccaaa ttcacaacac 420 gagatatgga gaactgttca caaggctgtg tacgcatata gagaagaaac tgctggggtc 480 atcctggtct aacaatgtcc cccggtcaga ggagttcaac agcatccgta cggatccggc 540 attctggttt cactcaaaat ggtccacagc caagtttgca tggctccata taaaacagat 600 ccagaggcat ctgattgtgg cagctaggac aaggtctgcg gccaacaaat tggtgatgct 660 aacccataag gtaggccaag tctttgtcac tcctgaactt gtcattgtga cgcatacgaa 720 tgagaacaag ttcacatgtc ttacccagga acttgtattg atgtatgcag atatgatgga 780 gggcagagat atggtcaaca taatatcaac cacggcggtg catctcagaa gcttatcaga 840 gaaaattgat gacattttgc agttaataga cgctctggca aaagacttgg gcaatcaagt 900 ctacgatgtt gtatcactaa tggagggatt tgcatacgga gctgtccagc tgctcgagcc 960 gtcaggtaga tttgcaggac atttcttcgc attcaacctg caggagctta aagacattct 1020 aatcggcctc ctccccaatg atatagcaga atccgtgact catgcaatag ctactgtatt 1080 ctctggttta gaacagaatc aagcagctga gatgttgtgc ctgttgcgtc tgtggggtca 1140 cccactgctt gagtcccgta ttgcagcaaa ggcagtcagg agccaaatgt gcgcaccgaa 1200 aatggtggac tttgatatga tccttcaggt actgtctttc ttcaagggaa caatcatcaa 1260 cggatacaga aagaagaatg caggtgtgtg gccgcgagtc aaagtggata caatatatgg 1320 gaagatcatt gggcaactac atgcagattc agcagagatt tcacacgata tcatgttgag 1380 agagtataag agtttatctg cacttgaatt tgagccatgt atagaatacg accctgtcac 1440 taacctgagc atgttcctaa aagacaaggc aatcgcacac cctaacgata attggcttgc 1500 ctcgtttagg cggaaccttc tctccgaaga ccagaagaaa catgtaaaag aagcaacttc 1560 gactaatcgc ctcttgatag agtttttaga gtcaaatgat tttgatccat ataaagagat 1620 ggaatatctg acgacccttg agtaccttag agatgacgat gtggcagtat catactcgct 1680 caaagagaag gaagtgaaag ttaatggacg gatcttcgct aagctgacaa agaagttaag 1740 gaactgtcag gtgatggcgg aagggatcct agccgaccag attgcacctt tctttcaggg 1800 aaatggagtc attcaggata gcatatcgtt gaccaagagt acgctagcga tgagtcaact 1860 gtcttttaac agcaataaga aacgtatcac tgactgtaaa gaaagagtat cttcaaaccg 1920 caatcatgat ccgaagagca agaaccgtcg gagagttgca accttcataa caactgacct 1980 gcaaaagtac tgtcttaatt ggagatatca gacaatcaaa ctgttcgctc atgccatcaa 2040 tcagttgatg ggcctacctc acttctttga gtggattcac ctaagactga tggacactac 2100 aatgttcgta ggagaccctt tcaatcctcc aagtgaccct actgactgtg acctctcaag 2160 agtccctaat gatgacatat atattgtcag tgccagaggg ggtatcgaag gattatgtca 2220 gaagctatgg acaatgatct ctattgctgc aatccaactt gctgcagcta gatcgcattg 2280 tcgcgttgcc tgtatggtac agggtgataa tcaagtaata gcagtaacga gagaggtaag 2340 atcagacgac tctccggaga tggtgttgac acagttgcat caagccagtg ataatttctt 2400 caaggaatta attcatgtca atcatttgat tggccataat ttgaaggacc gtgaaaccat 2460 caggtcagac acattcttca tatacagcaa acgaatcttc aaagatggag caatcctcag 2520 tcaagtcctc aaaaattcat ctaaattagt aatggtgtca ggtgatctca gtgaaaacac 2580 cgtaatgtcc tgtgccaaca ttgcctctac tgtagcacgg ctatgcgaga acgggcttcc 2640 caaggacttc tgttactatt taaactatat aatgagttgc gtgcagacat actttgactc 2700 tgagttctcc tacaacaaca attcgcaccc cgatcttaac cagtcgtgga ttgaggacat 2760 ctcttttgtg cactcatatg ttctgactcc tgcccaatta gggggactta gtaaccttca 2820 atactcaagg ctctacacta gaaatatcgg tgacccgggg actactgctt ttgcagagat 2880 caagcgacta gaagcagtgg gattactgag tcctaacatt atgactaata tcttaactag 2940 gccgcctggg aatggagatt gggccagtct ttgcaacgac ccatactctt tcaattttga 3000 gactgttgca agcccaaaca ttgttcttaa gaaacatacg caaagagtcc tatttgaaac 3060 ttgttcaaat cccttattgt ctggagtgca cacagaggat aatgaggcag aagagaaggc 3120 attggctgaa ttcttgctta atcaagaggt gattcatccc cgcgttgcgc atgctatcat 3180 ggaggcaagc tctgtaggta ggagaaagca aattcaaggg cttgttgaca caacaaacac 3240 cgtaattaag attgcactta ctaggaggcc actaggcatc aagaggctga tgcggatagt 3300 caattattct agcatgcatg caatgctgtt tagagacgat gttttttcct ccaatagatc 3360 caaccacccc ttagtctctt ctaatatgtg ttctctgaca ctggcagact atgcacggaa 3420 tagaagctgg tcacctttga cgggaggcag gaaaatactg ggtgtatcta atcctgatac 3480 gatagaactc gtagagggtg agattcttag tgtaagcgga gggtgcacaa gatgcgacag 3540 cggagatgaa cagtttactt ggttccatct tccaagcaat atagaattga ccgatgacac 3600 cagcaagaat cctccgatga gagtaccata tctcgggtca aagacacagg agaggagagc 3660 tgcctcactt gcgaaaatag ctcatatgtc gccacatgtg aaggctgccc taagggcatc 3720 atccgtgttg atctgggctt atggggataa tgaagtaaat tggactgctg ctcttacgat 3780 tgcaaaatct cgatgtaata taaacttaga gtatcttcgg ttattgtccc ctttacccac 3840 ggctgggaat cttcaacata gactagatga tggtataact cagatgacat tcacccctgc 3900 atctctctac aggtgtcacc ttacattcac atatccaatg attctcaaag gctattcact 3960 gaagaaggag tcaaagaggg gaatgtggtt tatcaacaga gtcatgctct tgggtttatc 4020 tctaatcgaa tcgatctttc caatgacgac aaccaggaca tatgatgaga tcacattgca 4080 tctacatagt aaatttagtt gctgtatcag ggaagcacct gttgcggttc ctttcgagct 4140 acttggggtg gcaccggagc taaggacagt gacctcaaac aagtttatgt atgatcctag 4200 ccctgtatcg gagggagact ttgcgagact tgacttagct atcttcaaga gttatgagct 4260 taatctggag tcatatccca cgatagagct aatgaacatt ctttcaatat ccagcgggaa 4320 gttgattggc cagtctgtgg tttcttatga tgaagatacc tccataaaga atgacgccat 4380 aatagtgtat gacaataccc gaaattggat cagtgaagct cagaattcag atgtggtccg 4440 cttatttgaa tatgcagcac ttgaagtgct cctcgactgt tcttaccaac tctattatct 4500 gagagtaaga ggcctagaca atattgtctt atatatgggt gatttataca agaatatgcc 4560 aggaattcta ctttccaaca ttgcagctac aatatctcat cccgtcattc attcaaggtt 4620 acatgcagtg ggcctggtca accataacgg atcacaccaa cttgcagata cggattttat 4680 cgaaatgtct gcaaaactgt tagtatcttg cactcgacgt gtgatctccg gcttatattc 4740 agggaataag tatgatctgc tgttcccatc tgtcttagat gataacctga atgagaagat 4800 gcttcagctg atatcccggt tatgctgtct gtacacggta ctctttgcta caacaagaga 4860 aatcccgaaa ataagaggct tatctgcaga agagaaatgt tcagtactta ctgagtatct 4920 actgtcggat gctgtgaaac cattacttag ccctgatcag gtgagctcta tcatgtctcc 4980 taacataatt acattcccag ctaatctgta ctacatgtct cggaagagcc tcaatttgat 5040 cagggaaagg gaggacaagg attctatcct ggcgttgttg ttcccccaag agccattatt 5100 agagttccct tctgtgcaag atattggtgc tcgagtgaaa gatccattca cccgacaacc 5160 tgcggcattt ttgcaagagt tagatttgag tgctccagca aggtatgacg cattcacact 5220 tagtcagatt catcctgagc tcacatcacc aaatccggag gaagactact tagtacgata 5280 cttgttcaga ggaataggga ctgcatcctc ctcttggtat aaggcatccc atctcctttc 5340 tgtacccgag gtaagatgtg caagacacgg gaactcctta tacttagctg aaggaagcgg 5400 agccatcatg agtcttctcg aactgcatgt accacatgaa actatctatt acaatacgct 5460 cttttcaaat gagatgaacc ccccgcagcg acatttcggg ccgaccccaa cccagttttt 5520 gaattcggtt gtttatagga acctacaggc ggaggtaaca tgcaaggatg gatttgtcca 5580 agagttccgt ccactatgga gagaaaatac agaggaaagc gacctgacct cagataaagc 5640 agtggggtat attacatctg cagtgcccta cagatctgta tcattgctgc attgtgacat 5700 tgaaatccct ccagggtcca atcaaagctt actagatcaa ttagctatca atttatctct 5760 gattgccatg cattccgtaa gggagggcgg ggtagtgatc atcaaagtgt tgtatgcaat 5820 gggatactac tttcatctac tcatgaactt gttcgctccg tgttccacaa aaggatacat 5880 tctctctaat ggttatgcat gtagagggga tatggagtgt tacctggtat ttgtcatggg 5940 ttacctgggc gggcctacat ttgtacacga ggtggtgagg atggcaaaaa ctctggtgca 6000 gcggcacggt acgcttttgt ccaaatcaga tgagatcaca ctgaccaggt tattcacctc 6060 acagcggcag cgtgtgacag acatcctatc cagtccttta ccaagattaa taaagtactt 6120 gagaaagaat attgacactg cgctgattga agctggggga cagcccgtcc gtccattctg 6180 tgcagagagt ttggtgagca cgctggcgga cataactcag ataacccaga tcattgctag 6240 tcacattgac acagtcatcc ggtctgtgat atatatggaa gctgagggtg atctcgctga 6300 cacagtattt ctatttaccc cttacaatct ctctactgac gggaaaaaga gaacatcact 6360 taaacagtgc acgagacaga tcctagaggt tacaatattg ggtcttagag tcgaagatct 6420 caataaaata ggcgatgtaa tcagcctagt gcttaaaggc atgatctcca tggaggacct 6480 tatcccacta aggacatact tgaagcatag tacctgccct aaatatttga aggctgtcct 6540 aggtattacc aaactcaaag aaatgtttac agacacctct gtattgtact tgactcgtgc 6600 tcaacaaaaa ttctacatga aaactatagg caatgcagtc aaaggatatt acagtaactg 6660 tgactcttaa cgaaaatcac atattaatag gctccttttc tggccaattg tatccttggt 6720 gatttaatta tactatgtta gaaaaaaatt gaactccgac tccttagagc tcgaattcga 6780 actcaaataa atgtctt 6797 // |
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