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EBI DbfetchID X01455; SV 1; linear; genomic RNA; STD; VRL; 3149 BP. XX AC X01455; K02537; XX DT 18-NOV-1986 (Rel. 10, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Reticuloendotheliosis virus strain A pol (3' end) and env genes XX KW capsid protein; env gene; glycoprotein; long terminal repeat; KW overlapping genes; pol gene; reverse transcriptase. XX OS Reticuloendotheliosis virus OC Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; OC Gammaretrovirus. XX RN [1] RP 1-3149 RX PUBMED; 6090694. RA Wilhelmsen K.C., Eggleton K., Temin H.M.; RT "Nucleic acid sequences of the oncogene v-rel in reticuloendotheliosis RT virus strain T and its cellular homolog, the proto-oncogene c-rel"; RL J. Virol. 52(1):172-182(1984). XX CC *source strain=A; CC CC Rev-A is the non-defective helper virus of Rev-T (see REVTREL) XX FH Key Location/Qualifiers FH FT source 1..3149 FT /organism="Reticuloendotheliosis virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:11636" FT CDS <1..1422 FT /codon_start=1 FT /product="C end of pol protein (reverse transcriptase)" FT /db_xref="GOA:P03360" FT /db_xref="HSSP:1CXQ" FT /db_xref="InterPro:IPR002156" FT /db_xref="UniProtKB/Swiss-Prot:P03360" FT /protein_id="CAA25685.1" FT /translation="KGELLTAGEKAIKNAPEILALLTAVWLPKRVAVMHCKGHQKDDAP FT TSTGNRRADEVAREVAIRPLSTQATISDAPDMPDTETPQYSHVEEALGHRLRGTKDSAG FT WWHLPDGRLLLPRAVGRKVLEQTHRATHLGESKLTELVRKHYPICGIYRAARDITTRCV FT ACAQVNPRAAPVEKGLNSRIRGAAPGEHWEVDFTEMITAKGGYKYLLVLVDTFSGWVEA FT YPAKRETSQVVIKHLILDIIPRFGLPVQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAY FT RPQSSGQVERMNRTLKKAIAKLEDRDRRGLGLPPPSGFAPGTVYPGREGLSPFEILYGL FT KPPVVPRVGCDKLASITNQTLLKSLQALQATRSLARAAARPTAPERSSARPYPTVPNLV FT TSFFVKKHDFQQLGPRWDGPYTVVLSTPTAVKAAGKTPWIHYSRLKKAPDNQEEWTVSP FT TSDPLRVKLTRRAKP" FT misc_feature 814..822 FT /note="pt. glycosylation site" FT misc_feature 877..885 FT /note="pot. glycosylation site" FT misc_feature 1072..1080 FT /note="pot. glycosylation site" FT CDS 1359..3107 FT /product="env-protein (capsid protein)" FT /note="(aa 1-582)" FT /db_xref="GOA:P03399" FT /db_xref="HSSP:1MOF" FT /db_xref="InterPro:IPR018154" FT /db_xref="UniProtKB/Swiss-Prot:P03399" FT /protein_id="CAA25686.1" FT /translation="MDCLTDLRSTEGKVDQAGKTLILLVVWWGFGTTAEGHPLQQLWEL FT PCDCSGGYVSPDLPITPTPSIAVASPLPDLRVWLQGSWGWGGGFRQQWECVFKPKIIPS FT VQEQPGPCECLTIATQMHSTCYEKAQECTLLGKTYFTAILQKTKLGSYEDGPNKLLQAS FT CTGIWETSMLGPRCPCVCLDGGGPTDRFGRICAEGLEEIIRHSYPSVQYHPLALPRPRG FT VDLDPQTSDILEATHQVLNATNPQLAENCWLCMTLGTQSPQPSRRMAMSLSMEIAVLAS FT LSGATHRVNRCQLLCREADNRTGIPVGYVHFTNCTSIQESLTRRVIYEILRDYVLHRVM FT YLCVEQHAYTALPNKWIGLCILASIVPDMSIIPGEEPIPLPSIEYTAGRHKRAVQFIPL FT LVGLGITGATLAGGTGLGVSVHTYHKLSNQLIEDVQALSGTINDLQDQIDSLAEVVLQN FT RRGLDLLTAEQGGICLALQEKCCFYANKSGIVRDKIRKLQEDLLARKRALYDNPLWNGL FT NGFLPYLLPSLGPLFGLILFLTLGPCIRKTLTRIIHDKIQGSKNPRISPAVQATPNRDG FT YPRSMV" FT misc_feature 2259..2267 FT /note="pot. glycosylation site" FT misc_feature 2298..2306 FT /note="pot. glycosylation site" FT misc_feature 2811..2819 FT /note="pot. glycosylation site" FT misc_feature 3132..>3149 FT /note="5' end of 3' long terminal repeat (LTR)" FT misc_feature 3132..3136 FT /note="inverted repeat marking LTR" XX SQ Sequence 3149 BP; 801 A; 844 C; 821 G; 683 T; 0 other; aaaggggaac tgttgacggc gggggaaaag gctatcaaaa acgcccccga aattctagcc 60 ttgctgaccg cggtctggct acctaaacgg gtagctgtga tgcattgcaa gggacaccag 120 aaagacgatg cacccacatc aactggtaac cgacgggcag atgaggtggc tcgagaagta 180 gctatacgtc ctttgagcac ccaagccacc atctccgatg caccggatat gccagatacc 240 gaaacccctc agtattcgca tgtggaggag gctctaggac atcgactgag ggggaccaaa 300 gactctgctg ggtggtggca ccttcctgac gggcgcctct tgcttcccag agcagtgggg 360 agaaaggtcc tagagcaaac tcacagagcc acacatttgg gtgaatcaaa attgactgag 420 ttagttagaa aacactatcc tatctgtggg atttatcgag cagctagaga tatcaccacc 480 cgctgtgtgg catgtgccca ggtaaaccct agagcagctc ccgtggagaa agggctcaat 540 tcccgcatca gaggtgcggc gccaggggaa cactgggagg tggatttcac agaaatgata 600 acagccaaag gggggtataa atacctgctt gtactggtag acacattctc gggctgggta 660 gaggcatatc cagcaaaaag agaaacctcc caagtggtga ttaagcatct aattcttgat 720 attatcccca ggtttgggtt accggtccag atcgggtccg acaatgggcc ggcctttgtg 780 gcaaaagtga cacagcagtt gtgtgaggcc ctaaatgtct cctggaagct ccattgtgca 840 taccgacctc aaagctcggg acaggtggaa aggatgaacc gaaccctaaa gaaagccatc 900 gctaaattgg aggatagaga caggagggga ctgggtctcc ctcctccctc aggctttgct 960 ccgggcacgg tgtaccccgg gagggaggga ttgtcaccct tcgagatatt atatggtctc 1020 aagcctcctg tagttccccg tgtaggatgt gacaagcttg ccagcataac caaccaaacc 1080 ttgcttaagt ccctacaggc cctccaggct actaggtctc tggctcgggc agctgcgcga 1140 ccaactgccc cagaaagaag ctcagcaaga ccgtacccca ctgtccccaa cctggtgacc 1200 tcgttcttcg ttaagaagca cgacttccag cagttggggc cacggtggga cggaccctac 1260 actgtagtcc taagtacccc caccgcggta aaggccgctg ggaagacccc gtggatccac 1320 tactctcgac tcaagaaagc tcctgacaac caagaagaat ggactgtctc accgacctcc 1380 gatccactga gggtaaagtt gaccaggcgg gcaaaaccct aattcttctt gtggtttggt 1440 gggggtttgg gaccactgcc gagggtcacc ccttgcagca actttgggaa ctgccttgtg 1500 actgctccgg gggatatgtc tcccccgacc tacctattac accaactccc tcgattgcgg 1560 tagcttcacc gctacctgac ttacgggtct ggttgcaggg tagttggggc tggggagggg 1620 gatttagaca acagtgggag tgtgtgttta aacccaagat cataccctct gtgcaggagc 1680 agccagggcc ctgcgaatgc ctcacgatag ccacccaaat gcattccacc tgttacgaaa 1740 aggctcagga atgcaccctc ctgggaaaaa cttattttac tgccatccta cagaaaacaa 1800 agctaggttc gtatgaagac gggcctaata aactgctcca agcctcttgc acgggaatct 1860 gggaaaccag tatgttggga ccccgctgcc cctgtgtatg tctcgatggg ggcggtccca 1920 ctgacagatt cggaagaatc tgtgcggaag gactggagga aatcatcagg cacagctacc 1980 cctccgtaca gtatcaccct ttagccctgc cccgaccaag aggagtagat ctggatcccc 2040 agacgtctga catactggaa gctactcacc aggtccttaa cgccactaat cctcagctag 2100 cagagaactg ctggctttgc atgactcttg gaactcaatc cccgcagcca tcccggcgaa 2160 tggcaatgtc actctcgatg gaaattgcag tcttagcctc cctttcgggt gcaacccacc 2220 gggtcaatag atgtcaactg ctatgcaggg aagcagacaa taggactggt atacccgtag 2280 ggtatgttca tttcactaac tgcactagca tccaagagtc tctaacgaga cgagtcatat 2340 atgaaatctt acgagactat gtcctccacc gggtcatgta tttgtgtgtg gaacaacatg 2400 cctacacggc gctccctaat aaatggatag ggttgtgcat actggcatca atcgtacccg 2460 acatgagcat aatacccggg gaagagccta tcccactccc atccatcgag tacaccgctg 2520 ggcgtcataa gagggcagtc cagtttatcc ccctgcttgt aggtctaggg attacagggg 2580 ctacacttgc tggtggaact ggacttgggg tttccgttca cacttatcac aagctttcta 2640 atcaattgat tgaagatgtc caggctcttt cagggaccat caatgaccta caggaccaga 2700 ttgactccct agctgaggtt gtcttacaaa atagaagggg gttagaccta ttgactgccg 2760 aacaaggagg aatatgtctc gcactccagg agaagtgctg tttttacgcc aacaagtcgg 2820 gtatagtacg tgacaagatc cggaaactcc aggaggacct tctcgcgagg aaacgtgcac 2880 tgtacgacaa ccccctgtgg aacggcttga acggcttcct tccatatttg ctaccctcgt 2940 tgggccccct gtttgggctc atattgttcc tgaccctcgg cccgtgcatc aggaagaccc 3000 tgactcgcat tatccatgac aaaattcagg gcagtaaaaa tcctcgcatt agtcccgcag 3060 tacaagccac tcccaacaga gatggatacc ctaggtcaat ggtttgacca gaacatacaa 3120 gagcagtggg gaatgtggga gggagctct 3149 // |
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