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EBI DbfetchID U77781; SV 1; linear; genomic DNA; STD; PRO; 4160 BP. XX AC U77781; XX DT 07-DEC-1996 (Rel. 50, Created) DT 24-SEP-2001 (Rel. 69, Last updated, Version 5) XX DE Xanthomonas campestris pv. amaranthicola XamI DNA methyltransferase (xamIM) DE gene, complete cds; insertion sequence IS1389 and unknown genes. XX KW . XX OS Xanthomonas campestris pv. amaranthicola OC Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; OC Xanthomonadaceae; Xanthomonas. XX RN [1] RP 1-4160 RX PUBMED; 9130589. RA Gomez P., Ribas-Aparicio R.M., Pelaez A.I., Gomez A., Rodicio M.R.; RT "Isolation and nucleotide sequence of the gene encoding the XamI DNA RT methyltransferase of Xanthomonas campestris pv. amaranthicola"; RL Biochim. Biophys. Acta 1351(3):261-266(1997). XX RN [2] RP 2947-4160 RX DOI; 10.1007/s002030050734 RX PUBMED; 10398747. RA Gomez P., Ribas-Aparicio R.M., Pelaez A.I., Rodicio M.R.; RT "Characterization of IS1389, a new member of the IS3 family of insertion RT sequences isolated from Xanthomonas campestris pv. amaranthicola"; RL Arch. Microbiol. 172(1):15-21(1999). XX RN [3] RP 1-3003 RA Gomez P., Ribas-Aparicio R.M., Pelaez A.I., Gomez A., Rodicio M.R.; RT ; RL Submitted (11-NOV-1996) to the EMBL/GenBank/DDBJ databases. RL Biologia Funcional, Universidad Oviedo, Julian Claveria, Oviedo 33006, RL Spain XX RN [4] RC Sequence update by submitter RP 1-4160 RA Gomez P., Ribas-Aparicio R.M., Pelaez A.I., Gomez A., Rodicio M.R.; RT ; RL Submitted (09-FEB-1999) to the EMBL/GenBank/DDBJ databases. RL Biologia Funcional, Universidad Oviedo, Julian Claveria, Oviedo 33006, RL Spain XX CC On Feb 9, 1999 this sequence version replaced gi:1688234. XX FH Key Location/Qualifiers FH FT source 1..4160 FT /organism="Xanthomonas campestris pv. amaranthicola" FT /strain="ATCC 11645" FT /mol_type="genomic DNA" FT /db_xref="taxon:54735" FT CDS 422..2005 FT /codon_start=1 FT /transl_table=11 FT /gene="xamIM" FT /product="XamI DNA methyltransferase" FT /note="M.XamI" FT /db_xref="GOA:P96188" FT /db_xref="InterPro:IPR002296" FT /db_xref="UniProtKB/Swiss-Prot:P96188" FT /protein_id="AAD13686.1" FT /translation="MSMQTEQELVALCLALIKDQDSLSAAEKKLTKTTPVSALKPREID FT TIRKRSRAGLTHSANVLFDPLGHRAPRAGAVYTPAPIVRSMMTWLAAQGSPARIVDPGA FT GSGRFILAAGEAFPDAQLVAVEMDPLAALMLRANLSARGWTDRATVMVKDYREVKLPPC FT AGITAFIGNPPYVRHHDIGEDWKAWYASNFAGYGIKASALAGLHLHFFLQTRLLAKAGD FT VGAFITSAEWMDVNYGSALRRLLLDELGGIALHVLEPTVEAFPGTATTAAIACFRVGET FT ARPVRVRFIDELTNLNGLTKGTDIPREQLQAASRWSIIVRPSAPAMAGDIELGELFRVH FT RGQVTGANGIWIAGEHAQGLPDRVKMPAVTKAKDLIQAGAHLNSAEVLRRVIDLPTDLD FT DFTKEERRRISSFLSWAKLHGADQSYIAQHRRAWWSVGLKAPAPILCTYMARRPPQFTL FT NACDARHINIAHGLYPREPLAAGIMASLVTWLNKNINTGSGRTYAGGLTKFEPKEIERL FT RIPSLENLHA" FT CDS 2002..2826 FT /codon_start=1 FT /transl_table=11 FT /product="unknown" FT /note="orf2; similar to SalI restriction enzyme" FT /db_xref="GOA:P96189" FT /db_xref="InterPro:IPR019072" FT /db_xref="UniProtKB/Swiss-Prot:P96189" FT /protein_id="AAD13687.1" FT /translation="MTSAPPRWTTAELAEDAATSAAQFRTERLAVTDSWGTHYNQARGK FT FELLFKKLSDLNPEAITDDNLAEAYGLGLGEALRYLAGPPISDDDLQVIADVESIAPGV FT LKKNAEALRKVFGVIERVIDPHRFPWMETGGMPTEQQREAALLASSVLLAAQRIATERR FT NEGKDNQETMVKDYLRTLGFTEAPAAAINTIVKGPQAMQFCAECQLGERKADVVVRLHD FT TRLMAIECKVSNSSTNSVKRLNNDAAVKAEYWIKQFGTAQVVPSRSLVSSRY" FT repeat_region complement(2947..4153) FT /rpt_family="IS1389" FT /note="IS3 family" FT repeat_region complement(2947..2999) FT /rpt_type=INVERTED FT /note="IRD" FT CDS complement(2981..3826) FT /codon_start=1 FT /transl_table=11 FT /product="unknown" FT /note="OrfB" FT /db_xref="GOA:Q9Z3F1" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q9Z3F1" FT /protein_id="AAD13689.1" FT /translation="MVSAPARRALVREWIGRGASERRALAAIGMSASALRYCPRQDRNG FT ELRERILALAHRHRRYGVGMIYLKLRQEGRLVNYKRVERLYREQQLQVRHRKRKKVPVG FT ERHALLRPAQANQVWSMDFVFDRSADGRVIKCLVIVDDATHEAVAIEVERAISGHGVAR FT VLDRSAHSRGLPQVIRTDNGKEFCGKAMVAWAHDRGVQLRLIQPGKPNQNAYVESFNGR FT VRDECLNEHWFPTLLHARTEIERWRREYNEDRPKKAIGGMTPSAYAQHLANTDIINPGL FT " FT CDS complement(3820..4083) FT /codon_start=1 FT /transl_table=11 FT /product="unknown" FT /note="OrfA" FT /db_xref="GOA:Q9Z3D0" FT /db_xref="InterPro:IPR002514" FT /db_xref="UniProtKB/TrEMBL:Q9Z3D0" FT /protein_id="AAD13688.1" FT /translation="MKKRFSEEQIIGFLREAEAGIAIKDLCRRHGFSEASYYLWRSKFG FT GMSVPDAKRLKDLEAENARLKKLLAEQLFENDLIKDALRKKW" FT -10_signal complement(4107..4112) FT repeat_region complement(4110..4153) FT /rpt_type=INVERTED FT /note="IRL" FT -35_signal complement(4130..4135) XX SQ Sequence 4160 BP; 833 A; 1268 C; 1240 G; 819 T; 0 other; atcgataggc caccttcgta ccgagaactc gagtggcgcg agcgaggtga tggtcagcga 60 tgatgatctg tactgcgttg gtccgctcaa ttggttgagc gcctggcaag acatgcaaca 120 ggcgcaagct aacttgctgt aattaaatct cttttattga ttcctgccga tcctcggtaa 180 cggttgcgcc tggtgaaaat ggatacacac tgtgtatcca ttgtgctaac ctcaatgaat 240 gtcgctcaaa gactccggga tgcgaatcag ggtggaaaaa gagctgcgcg atgcattcgt 300 gcaggcttgc cgtgcccaag atcggcccgc tgccgatgtc ttcggacttc atgcgggcct 360 tcacggagaa gcagctacac ggccgggcag agctgttcac cggcaccaat agaaagcaga 420 aatgagcatg cagacagaac aagagctagt cgcactgtgc ctggccctga tcaaggacca 480 agacagcctg tctgcggccg aaaagaagct cacaaagacc actccggtgt cggctctcaa 540 gccccgggag atcgatacga tccgcaagcg atcgcgcgcg gggctgaccc actcggcgaa 600 cgttctcttc gatccgctcg gccaccgagc gccgcgcgca ggagccgtct acacgcctgc 660 accgatcgtg cgctcaatga tgacatggtt ggccgcccaa ggctcgccag cacggatcgt 720 tgatccgggc gcgggttcgg gtcgctttat cctggcagca ggcgaagcat tcccggatgc 780 gcagcttgtc gccgtcgaga tggacccact cgcggcgctt atgctgcgtg cgaatctgag 840 cgcacgtggc tggacagatc gagcgacggt gatggtcaag gactatcggg aggtcaagct 900 accgccgtgc gctggcataa cagcgttcat cggcaatccg ccatatgtac ggcatcatga 960 catcggcgaa gattggaagg cctggtacgc ctcgaacttc gctggttacg gcatcaaggc 1020 aagtgccctc gctggcctgc atttgcattt cttcctgcaa accaggctgc tggccaaggc 1080 tggcgatgtt ggcgcattca ttacctcggc ggagtggatg gatgtcaact atggttctgc 1140 gctgcgtagg cttctgctcg acgagctagg tggcatcgcc ctgcacgtcc ttgagccgac 1200 tgtcgaagcc ttccccggca cagcaacgac agcagcgatc gcatgcttcc gcgtgggtga 1260 aacggcccgc cccgtgcgtg tccgcttcat tgacgagttg accaacctca acggattgac 1320 gaaggggacc gacatccccc gtgagcaact gcaagctgct tcgcgttggt caatcatcgt 1380 tcgtccctca gcaccagcca tggcaggtga catcgagctt ggtgagctgt tccgcgtgca 1440 tcgtggccaa gtgacaggcg caaatggcat ctggattgct ggcgagcacg cgcagggctt 1500 gcccgatcgg gtgaagatgc ccgccgtcac caaggccaag gatctgatcc aggcaggcgc 1560 acacctgaac tcggccgagg ttttgcgccg tgtgattgac ctaccgaccg atctggacga 1620 cttcacgaag gaagagcggc ggcgtatcag ttccttcctg tcgtgggcga agctccacgg 1680 ggcagatcaa agctatatcg cgcagcatcg acgcgcctgg tggtctgttg gcctcaaggc 1740 cccggcgccg atactgtgca cctatatggc ccgcaggccc cctcagttca cgcttaatgc 1800 atgcgacgcg cggcacatca acatcgccca tggcctgtac cctcgcgagc cgctggccgc 1860 tggcataatg gccagcctgg tgacgtggct caacaaaaac atcaacacgg gaagcggcag 1920 aacatatgcc ggtggcttga ccaagttcga gcccaaggag attgagcgtc tgcgcattcc 1980 aagtctggaa aacctgcacg catgactagt gcgcctccac ggtggacaac cgccgagctt 2040 gccgaagacg cggccacttc tgccgcacag ttccgcactg agcggctggc ggtcactgac 2100 tcttggggca cgcactacaa ccaagcacgc ggcaagttcg agctgctttt caagaagttg 2160 agcgacctca atccggaagc gatcacagat gacaacctcg ccgaggctta tggtctaggt 2220 cttggtgagg cgcttcgcta cttggctggc ccacctatct cagacgacga tttgcaggtc 2280 attgctgatg tcgagtcgat cgcgcctggc gtcttgaaga aaaatgccga agcactgcgc 2340 aaggtgttcg gcgtgatcga gcgggtgatc gatccgcacc gcttcccgtg gatggaaact 2400 ggtgggatgc ctacagaaca gcaacgcgag gcggcgctac ttgcctcttc ggtgctcctg 2460 gccgcgcagc gcatcgctac cgagcgacgc aacgagggca aggacaacca agagacgatg 2520 gtgaaggact accttcgcac ccttggcttc accgaagccc cggcggcggc aataaatact 2580 atcgtcaagg gaccacaggc catgcagttc tgtgcagagt gtcagctcgg ggagcgtaag 2640 gccgatgttg tcgtgcggct gcacgacacg cgcctaatgg cgatcgagtg caaggtatcc 2700 aacagctcaa ccaacagcgt gaaacgtttg aacaacgacg cggcagtcaa ggccgagtac 2760 tggattaagc agttcggcac cgcgcaagtg gtgccgtcgc gctcgctggt gtcttcaagg 2820 tactgaacct cgaacaggcg cagacgcgag gcctttccct gttctggtcg cacgatctcg 2880 aaaagctcgg tttgtttatc gaatccacaa aatgatggca gggaaggaag gcgcacggcg 2940 ccgcgtagcg acgtcccccc gccctgagta gcggccgcgt ttagagtccg gggttgatga 3000 tatcggtgtt tgccagatgt tgggcataag cggacggcgt catgccgcca attgctttct 3060 tgggtcggtc ctcgttgtat tcgcgtcgcc agcgttcgat ctcggtgcgc gcatgcagca 3120 acgtcgggaa ccagtgctcg ttgaggcatt cgtcgcgcac gcggccgttg aacgattcga 3180 cgtaggcgtt ctggtttggt ttgcccggct ggatgagccg tagctgcaca ccccggtcat 3240 gcgcccaggc aaccatcgct ttgccgcaaa actccttgcc attgtcggtg cggatcacct 3300 gcggcaggcc gcgactgtgt gccgaccgat ccagcacgcg cgcaaccccg tgcccggaga 3360 tcgcgcgttc cacctcgatg gcgaccgctt cgtgcgttgc gtcgtccacg atcaccagac 3420 acttgatcac tcggccgtcg gcggagcggt cgaacacgaa gtccatcgac cacacctggt 3480 tggcctgcgc tggccgcagc agcgcgtgac gctcgccaac cggtaccttc ttgcgcttgc 3540 ggtgccgcac ttgtagctgc tgctcgcgat acaaccgctc cacgcgcttg tagttcacca 3600 ggcgtccttc ctgtcgcagc ttgagataga tcatccccac gccgtagcgg cgatggcgat 3660 gcgccaacgc aagaatgcgc tcgcggagtt cgccattgcg gtcttgacgt gggcaatagc 3720 gcagcgcgct ggcgctcatg ccgatcgccg ccaacgcacg acgctcgctg gcaccacgcc 3780 cgatccactc gcgcaccagc gcacgacgcg ccggtgcgct caccactttt ttcgcaaagc 3840 atccttgatc aggtcattct cgaacaactg ctcggccagc aacttcttta gccgcgcgtt 3900 ctcggcctca aggtccttga gccgcttggc gtcgggcacg ctcatgccgc cgaacttgct 3960 gcgccacaga tagtacgagg cctcactgaa gccatgccgc cggcataagt ccttgatcgc 4020 tatgcccgct tcggcctcgc gcaggaagcc gatgatctgc tcttcggaaa aacgcttctt 4080 cacgtccaat ctccttgggg tagggaattg gactccaaac tgaggtgcta ctcaaaattg 4140 gggggacgtc gctgggccag 4160 // |
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