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EBI DbfetchID U73034; SV 2; linear; genomic RNA; STD; VRL; 7279 BP. XX AC U73034; XX DT 18-MAR-1998 (Rel. 55, Created) DT 11-OCT-1999 (Rel. 61, Last updated, Version 2) XX DE Lassa virus Z protein and L protein genes, complete cds. XX KW . XX OS Lassa virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC Old world arenaviruses. XX RN [1] RP 1-7279 RX DOI; 10.1006/viro.1997.8722 RX PUBMED; 9281522. RA Djavani M., Lukashevich I.S., Sanchez A., Nichol S.T., Salvato M.S.; RT "Completion of the Lassa fever virus sequence and identification of a RING RT finger open reading frame at the L RNA 5' End"; RL Virology 235(2):414-418(1997). XX RN [2] RP 1-7279 RA Djavani M., Lukashevich I., Sanchez A., Nichol S.T., Salvato M.S.; RT ; RL Submitted (01-OCT-1996) to the EMBL/GenBank/DDBJ databases. RL Pathology and Laboratory Medicine, University of Wisconsin-Madison, 1300 RL University Ave, 512 SMI, Madison, WI 53706, USA XX RN [3] RC Sequence update by submitter RP 1-7279 RA Djavani M.; RT ; RL Submitted (08-OCT-1999) to the EMBL/GenBank/DDBJ databases. RL Pathology, University of Wisconsin, 1300 University Ave., SMI, Rm.#512, RL Madison, WI 53706, USA XX CC On Oct 8, 1999 this sequence version replaced gi:2967632. XX FH Key Location/Qualifiers FH FT source 1..7279 FT /organism="Lassa virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:11620" FT CDS 66..365 FT /codon_start=1 FT /product="Z protein" FT /note="ring finger protein" FT /db_xref="GOA:O73557" FT /db_xref="InterPro:IPR017907" FT /db_xref="UniProtKB/Swiss-Prot:O73557" FT /protein_id="AAC05816.2" FT /translation="MGNKQAKAPESKDSPRASLIPDATHLGPQFCKSCWFENKGLVECN FT NHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPTAPPTGAADSIRPPPYSP" FT CDS complement(466..7122) FT /codon_start=1 FT /product="L protein" FT /note="L polymerase" FT /db_xref="GOA:O09705" FT /db_xref="InterPro:IPR010453" FT /db_xref="UniProtKB/Swiss-Prot:O09705" FT /protein_id="AAC05817.1" FT /translation="MEEDIACVKDLVSKYLVDNERLSRQKLAFLVQTEPRMLLMEGLKL FT LSLCIEVDSCNANGCEHNSEDKSVERILHDHGILTPSLCLWYPDGYKLTGNVLILLECF FT VRSSPANFEQKYIEDFKKLEQLKEDLKSVDINLIPLIDGRTSFYNEQIPDWVNDKLRDT FT LFSLLKYAQESNSLFEESEYSRLCESLFMTSGRLSGVESLNVLMDNRSNHYEEVIASCH FT QGINNKLTAHEVKLQIEEEYQVFRNRLRKGEIEGQFLKVDKSQLLNELNNLYADKVVAE FT DNIEHLIYQFKRASPILRFLYANVDEGNEKRGNQTIGECQVQCWRSFLNKVKSLRILNT FT RRKLLLIFDALILLASKHDLMKQKCLKGWLGSCFLRVKDRLVSLEATKRDLEKWGERGN FT RLRSRITQSSQCLSKNQILNSIFQKTILKATTALKDVGISVDHYKIDMEVICLNSYDLI FT MDFDVSGVVPTISYQRTEEETFPYVMGDVELLGTTDLERLSSLSLALVNSMKTSSTVKL FT RQNEFGPARYQVVRCKEAYCQEFSLGNTELQLIYQKTGECSKCYAINDNKVGEVCSFYA FT DPKRYFPAIFSAEVLQTTISTMISWIEDCNELEGQLNNIRSLTKMILVLILAHPSKRSQ FT KLLQNLRYFVMAYLSDYHHKDLIDKIREELITDVEFLLYRLIRTLMNLVLSEDVKSMMT FT NRFKFILNVSYMCHFITKETPDRLTDQIKCFEKFLEPKVRFGHVSTNPADTATEEELDD FT MVYNAKKFLSKDGCTTIEGPDYKRPGVSKKYLSLLTSSFNNGSLFKEREVKREIKDPLI FT TSGSAALDLASKKSVVVNKYTDGSRILNYDFNKLTALAVSQLTEVFSRKGKYLLNKQDY FT EYKVQQAMSNLVLGSGQLKSDADGADLDEILLDGGASDYFDQLKETVEKIVDQYREPVK FT LGSGPNGDGQPSINDLDEIVSNKFYIRLIKGELSNHMVEEFDHDILPGKFYEEFCNAVY FT ENSRLKQKYFYCGHMSQCPIGELTKAVSTRTYFNHEYFQCFKSILLIMNANTLMGRYTH FT YKSRNLNFKFDMGKLSDDVRISERESNSEALSKALSLTNCTTAMLKNLCFYSQESPQSY FT DSVGPDTGRLKFSLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEAISLQLSGSCLNNE FT KEFENAILSMKLNVSLAHVSYSMDHSKWGPMMCPFLFLTVLQNLIFLSKDLQADIKGRD FT YLSTLLMWHMHKMVEIPFNVVTAMMKSFIKAQLGLRKKTKQSITEDFFYSNFQAGVVPS FT HISSILDMGQGILHNTSDFYALISERFINYAISCICGGTIDAYTSSDDQISLFDQSLTE FT LLQRDPEEFRTLIEFHYYMSDQLNKFVSPKSVIGRFVAEFKSRFFVWGDEVPLLTKFVA FT AALHNIKCKEPHQLAETIDTIIDQSVANGVPVHLCNLIQKRTLNPLQYARYPIDPFLLN FT CETDVRDWVDGNRSYRIMRQIEGLIPNACSKIRSMLRKLYNRLKTGQLHEEFTTNYLSS FT EHLSSLRNLCELLDVEPPSESDLEYSWLNLAAHHPLRMVLRQKIIYSGAVNLDDEKIPT FT IVKTIQNKLSSTFTRGAQKLLSEAINKSAFQSSIASGFVGLCRTLGSKCVRGPNKENLY FT IKSIQSLISDVKGIKLLTNSNGIQYWQVPLELRNGSGGESVVSYFRPLLWDYMCISLST FT AIELGAWVLGEPKTVKVFDFFKHNPCDYFPLKPTASKLLEDRVGLNHIIHSLRRLYPSV FT FEKHILPFMSDLASTKMKWSPRIKFLDLCVALDVNCEALSLVSHIVKWKREEHYIVLSS FT ELRLSHSRTHEPMVEERVVSTSDAVDNFMRQIYFESYVRPFVATTRTLGSFTWFPHKTS FT VPEGEGLHRMGPFSSFVEKVIHKGVERPMFKHDLMMGYAWIDFDIEPARFNQNQLIASG FT LVDPKFDSLEDFFDAVASLPPGSAKLSQTVRFRVKSQDASFKESFAIHLEYTGSMNQQA FT KYLVHDVTVMYSGAVSPCVLSDCWRLVLSGPTFKGKSAWYVDTEIINEFLIDTNQLGHV FT TPVEIVVDMERLQFTEYDFVLVGPCTEPTPLVVHRGGLWECGKKLASFTPVIQDQDLEI FT FVREVGDTSSDLLIGALSDMMIDRLGLRMQWSGVDIVSTLRAAAPSCEGILSAVLEAVD FT NWVEFKGYALCYSKSRGKVMVQSSGGKLRLKGRTCEELTRKDECIEDIE" XX SQ Sequence 7279 BP; 2103 A; 1737 C; 1256 G; 2183 T; 0 other; cgcaccgggg atcctaggca atttggttgt ctttttttga ggccttgtgc gctgtacttc 60 tccaaatggg aaacaagcaa gccaaagccc cagaatcaaa agacagtccg agagccagcc 120 tgatcccaga tgccacacat ctagggccac agttctgtaa gagctgctgg ttcgaaaaca 180 agggcctggt tgagtgcaac aaccactatc tgtgtctcaa ctgcctcacc ttacttctaa 240 gtgtcagcaa caggtgtccc atttgcaaga tgcctctccc cacaaaactg agaccatcag 300 ccgctccaac agcacctcca accggagcag cggacagcat cagaccccca ccctacagtc 360 cctgaatctc ccaccgaccc ccaccactcc catcctcccc ccgacacccc ccggggggac 420 cccccgccgg gggccccccc gggggagcca accatcacca aaaaactact caatgtcttc 480 gatgcattca tccttcctag tcagctcctc acatgttctg cccttcaatc tcaatttacc 540 accacttgat tgtaccatca cctttcccct tgacttacta taacagagag cataaccctt 600 gaactccacc cagttgtcca ctgcctcaag aaccgcactc aagatcccct cacaactcgg 660 cgctgcagcc ctaagtgtgg agacaatgtc cacccctgac cactgcatcc ttaaccccag 720 cctgtctatc atcatatcac tcaatgcccc aatcagcagg tcagacgaag tgtccccaac 780 ctctctcaca aatatctcaa gatcctggtc ttgtataaca ggtgtaaagg atgccaattt 840 ctttccacat tcccacaagc ctcccctatg cacaaccagg ggggttggtt cagtgcaagg 900 acccaccaat acaaagtcat actccgtaaa ctgcaacctt tccatatcaa caacaatctc 960 aacaggggtc acatgcccta gttgatttgt gtcaattaaa aactcattaa tgatctcggt 1020 gtcaacatac catgctgatt tgcccttgaa agtaggtcct gacaaaacca gtctccaaca 1080 gtctgacaag acacacggac tcactgcacc tgagtacata acggttacat catgtactag 1140 atacttggcc tgttgattca ttgagccagt atactcaagg tggatggcaa agctttcctt 1200 aaaactagca tcttgacttt taacacggaa cctcactgtc tgactcagtt ttgcagaccc 1260 tggaggtagt gaagctacgg catcaaagaa atcctccaat gagtcaaact taggatcaac 1320 taaacctgat gcgatcaatt gattttgatt gaatctagct ggctcaatat caaagtctat 1380 ccaagcataa cccatcatca gatcatgctt aaacattggc ctttcaacac ctttgtgaat 1440 aactttctct acaaatgaag aaaatggacc cattctatgc aacccttcac cctctggaac 1500 tgatgtcttg tgtggaaacc acgtgaagga ccccaatgtt cttgtagtcg caacaaatgg 1560 tctcacgtaa gactcaaaat aaatttgcct catgaaattg tcaacagcat cactagtgct 1620 cactactctt tcttccacca tgggttcatg tgtcctactg tgagacaacc tcaattcaga 1680 tgataacaca atgtaatgtt cctctctttt ccattttact atgtgtgaga caagagacaa 1740 ggcttcacag ttaacatcca acgctacaca gagatctaga aattttattc tgggtgacca 1800 cttcattttg gttgacgcta gatcgctcat gaatggtaat atgtgtttct caaacactga 1860 tgggtacagc cttcttaaag aatgaatgat gtgattcaaa ccaaccctat cctccaatag 1920 ttttgatgca gttggcttta agggaaaata gtcacaaggg ttatgtttga aaaaatcaaa 1980 caccttaact gtcttaggtt cccctaagac ccatgcaccc agttctattg cagttgataa 2040 ggagatgcac atataatccc ataacaaggg tctgaaataa ctgaccacac tttcacctcc 2100 acttccattt ctaagttcta gcggaacttg ccaatattga atgccattag aatttgtcaa 2160 caatttgatt cccttgacat cagaaatcag agactgaatg gacttaatat acagattctc 2220 tttatttggt ccccgaacac atttgctacc caatgttctg cacaatccta caaagccaga 2280 tgcaatggaa ctttggaatg cagatttgtt gatagcttca gacagcaatt tttgcgcacc 2340 tcgagtgaaa gtggaagaca acttattttg gattgttttg acaatggtag gaatcttctc 2400 atcatctagg ttcacagcac ctgaatatat tatcttttgt ctcaacacca ttcttaaagg 2460 atgatgcgca gccaagttta gccaagaata ctcaaggtca gactcagatg ggggctcaac 2520 atccaacagc tcacaaagat ttcttagtga tgagaggtgc tcactagaca aatagtttgt 2580 tgtgaactct tcatggagtt gcccagtctt caacctattg tacagttttc ttaacataga 2640 tctaatcttg ctgcaagcat taggaatcaa tccctctatt tgcctcataa tcctataact 2700 acggttgcca tctacccagt ctctaacatc tgtctcgcaa ttcaataaga atgggtcaat 2760 agggtatctt gcatattgca aaggatttaa ggttcttttc tgtattagat tacataagtg 2820 aacagggaca ccattcgcaa ccgactgatc aatgattgtg tcaattgttt ctgccagttg 2880 gtgtggctct ttacacttta tattgtgaag agctgctgca acgaactttg tcaataatgg 2940 cacttcatct ccccaaacaa aaaatctaga tttaaactct gcaacaaacc tgccaatgac 3000 acttttaggg ctcacaaact tattgagttg atcactcata taatagtgga actctattag 3060 agtcctaaat tcttctgggt ctctttgcaa aagctctgtg agagattgat caaagagaga 3120 aatctgatca tcactagagg tataagcatc tatcgtacca ccgcatatac aactgatagc 3180 ataattaatg aacctctctg aaatgagggc ataaaaatct gatgtgttgt gtaatattcc 3240 ttgacccatg tcaagtattg aactgatgtg agaaggcact acaccagctt ggaaattaga 3300 gtaaaagaaa tcttctgtta ttgactgttt agttttcttc cttaacccta gttgggcttt 3360 aatgaaagac ttcatcatgg ctgtcaccac attaaaaggt atttccacca ttttgtgcat 3420 atgccacata agtagggttg agagatagtc cctccctttt atgtcagctt gcaagtcctt 3480 tgagaggaaa attaaattct gtaagacagt caagaacaaa aatggacaca tcattgggcc 3540 ccacttacta tgatccatgc tataagacac atgtgccaat gaaacattca atttcatgga 3600 aaggatagca ttttcaaatt ccttctcgtt gttcaggcaa ctccctgata actgtaggct 3660 tatagcttca aagtaatctt ctataagtct agtaaacatc tttgttctaa gatcaccaat 3720 atataattct ctgttaccac ccacttgttc tttatatgac aaagaaaact taagccttcc 3780 tgtatcaggt cccactgagt cataagattg tggcgactct tggctataaa aacacaaatt 3840 ctttaacatt gctgtggtac agtttgtcag tgacagagcc ttactaagtg cctctgaatt 3900 gctctccctt tcactaattc ttacatcatc agagagttta cccatatcaa acttgaaatt 3960 aaggttcctt gacttataat gagtgtacct ccccataagt gtattcgcat tcatgatcaa 4020 gagtatggac ttaaaacact gaaagtattc atggttaaag tatgtccttg ttgacactgc 4080 ctttgtcaac tctccaatag gacactgtga catatgtcca cagtaaaaat acttctgctt 4140 caatctacta ttctcataga cagcattaca gaattcttca taaaatttac ctggtaagat 4200 atcatgatca aactcctcaa ccatgtgatt ggataattca cccttgatca acctaatgta 4260 aaacttattt gagacaatct catctagatc atttattgat ggttggccat caccattagg 4320 gcctgagcct agcttgacag gttccctata ctgatcaaca attttttcaa cagtctcctt 4380 tagctgatca aaataatcgc ttgcacctcc atcgagcaaa atttcgtcta ggtcagcccc 4440 atcagcatca cttttgagct gcccagatcc tagaaccaaa ttgctcattg cctgctgaac 4500 tttgtactca tagtcctgct tgttgagaag gtactttcct ttccttgaga agacttcagt 4560 gagctgcgac acggccagtg ctgtgagctt attgaagtca tagtttaata ttctagaacc 4620 atctgtgtat ttattaacaa caacactttt cttgctggct aaatccaagg ctgcactgcc 4680 actggtgatg agaggatctt tgatttccct ttttacttcc ctctccttaa atagtgaacc 4740 attgttaaaa gaggatgtaa gaagagataa atacttcttt gaaacaccag gccttttata 4800 atctggtccc tcgatagttg tgcatccatc tttacttaaa aacttttttg cattgtagac 4860 catgtcatcc aattcttcct cagtggctgt gtctgcagga ttagtgctca catgaccaaa 4920 tctcaccttt ggttccagaa acttctcaaa acattttatc tgatctgtca atctatctgg 4980 tgtttctttc gtaatgaagt ggcacatgta ggaaacattc aaaatgaact tgaacctatt 5040 agtcatcatg ctcttcacat cctcagataa aaccagattc attaatgtcc ttattaacct 5100 atagagcagg aactcaacat cagtgattaa ttcttccctt attttgtcaa tgaggtcctt 5160 atgatgataa tctgatagat aagccattac aaagtaccta agattttgga ggagcttttg 5220 agaacgttta ctggggtgag ctaaaattaa aaccaggatc atctttgtca gagacctgat 5280 attgttcaac tgcccttcca gctcattgca atcttctatc caagaaatca tagtgcttat 5340 tgttgtttgt aaaacctcag ctgaaaatat tgctggaaaa tatcttttag gatcagcata 5400 aaatgagcac acctcaccaa ctttgttatc attaatagca tagcacttcg agcactcccc 5460 tgtcttttga taaatcagtt gtaattcagt gttacccaat gaaaactctt gacaatatgc 5520 ttctttgcat ctgaccactt gataccttgc gggtccaaat tcattctgtc tcagctttac 5580 ggtagaagaa gttttcatag agttcaccaa agcgaggctc aatgaggaaa gtctctctaa 5640 gtcagtggtt cccagtagtt ccacatcccc catcacataa gggaatgttt cttcctctgt 5700 tctctgataa ctgattgttg ggacaactcc ggagacatca aagtccataa tcaaatcata 5760 gctgttaagg cagatcacct ccatatcaat tttatagtgg tccacactga tcccaacatc 5820 ctttaaagca gtggtggcct tcaaaatggt tttctggaat attgaattga ggatttgatt 5880 cttactcaaa cactgggagg actgtgtgat tctagatctt agcctgttgc ctcgctctcc 5940 ccatttctcg agatccctct ttgttgcctc caaagaaact agtctatctt taactcttaa 6000 gaagcaagac cccaaccacc cttttaaaca cttttgtttc atcaggtcat gcttacttgc 6060 aaggagaatt agtgcatcaa aaattaatag aagtttcctc cttgtgttca atatcctcaa 6120 agattttact ttatttagga atgatctcca gcattgaacc tgacattctc caatagtttg 6180 gtttcccctt ttttcattcc cctcatcaac atttgcatac aaaaatctca atattggtga 6240 tgctctcttg aactggtaaa ttaagtgttc gatattgtct tctgcaacta ccttatcagc 6300 gtacaaattg ttaagctcat taagtaactg gctcttatca acctttaaaa actgaccttc 6360 tatctctcct ttcctcaatc tgttcctaaa cacttgatac tcctcttcga tctgcagctt 6420 tacctcatga gctgttaatt tattattgat gccctggtgg catgaggcaa tcacttcctc 6480 ataatgatta gagcgattgt ccatcagaac atttaaactc tccacccctg ataatctacc 6540 cgaagtcatg aataaagatt cacagagtct gctatactct gactcttcaa aaagtgaatt 6600 actctcctgt gcatacttta aaagtgagaa gagcgtatcc ctcaacttat cattgaccca 6660 gtcaggtatt tgttcattgt agaatgatgt tctcccgtct ataagtggta ttaaattgat 6720 gtcgacactc ttcaggtctt ctttcagctg ctctaatttt ttgaagtcct caatgtactt 6780 ctgctcaaag ttagcaggag atgatctaac aaaacactcc agcagtatta gaacattgcc 6840 cgtcagtttg taaccgtccg ggtaccacaa acatagtgaa ggtgtcaaga ttccatggtc 6900 atggagaatt ctttccacag atttgtcctc actgttatgc tcgcaaccat ttgcgttgca 6960 agaatcaacc tcaatacaga gggacaagag tttcaaccct tccattaata gcatcctagg 7020 ctctgtctgc acaagaaatg ctaacttctg tcttgacaat ctctcgttgt ccactaggta 7080 ttttgatact aagtctttga cacaggctat gtcttcctcc atgtttagct gcaggtatga 7140 tgttcagaac cctcagaaca tgtggtctgc tagagcaaca gttcgctatg ggatagggtc 7200 ccgtaggggc acagaagaca caagaggcaa ttaaagacaa ttaaataaga tagccttaat 7260 gcctaggatc ctcggtgcg 7279 // |
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