 |
|
EBI DbfetchID U61140; SV 1; linear; genomic DNA; STD; PRO; 5085 BP. XX AC U61140; X84021; XX DT 22-NOV-1996 (Rel. 50, Created) DT 10-JAN-2007 (Rel. 90, Last updated, Version 3) XX DE Mycoplasma mycoides mycoides SC immunodominant protein P72 (p72) gene, DE complete cds, mannitol-1-phosphate dehydrogenase (mtlD) gene, partial cds DE and insertion sequence IS1296, complete sequence. XX KW . XX OS Mycoplasma mycoides subsp. mycoides SC OC Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma. XX RN [1] RP 2903-4387 RX DOI; 10.1016/0378-1119(95)00195-C RX PUBMED; 7628725. RA Frey J., Cheng X., Kuhnert P., Nicolet J.; RT "Identification and characterization of IS1296 in Mycoplasma mycoides RT subsp. mycoides SC and presence in related mycoplasmas"; RL Gene 160(1):95-100(1995). XX RN [2] RP 1-5085 RX PUBMED; 9004514. RA Cheng X., Nicolet J., Miserez R., Kuhnert P., Krampe M., Pilloud T., RA Abdo E.M., Griot C., Frey J.; RT "Characterization of the gene for an immunodominant 72 kDa lipoprotein of RT Mycoplasma mycoides subsp. mycoides small colony type"; RL Microbiology 142(Pt 12):3515-3524(1996). XX RN [3] RP 1-5085 RA Cheng X., Kuhnert P., Frey J.; RT ; RL Submitted (18-JUN-1996) to the EMBL/GenBank/DDBJ databases. RL Veterinary Bacteriology, University of Bern, Laenggass-Str. 122, Bern BE RL 3012, Switzerland XX CC On Nov 21, 1996 this sequence version replaced gi:944834. XX FH Key Location/Qualifiers FH FT source 1..5085 FT /organism="Mycoplasma mycoides subsp. mycoides SC" FT /sub_species="mycoides" FT /strain="L2" FT /mol_type="genomic DNA" FT /note="small colony type" FT /db_xref="taxon:44101" FT CDS <1..1242 FT /codon_start=1 FT /transl_table=4 FT /product="ORF1" FT /db_xref="GOA:P55802" FT /db_xref="InterPro:IPR019992" FT /db_xref="UniProtKB/Swiss-Prot:P55802" FT /protein_id="AAC44570.1" FT /translation="DLDKLPKEISFERFDFYTSKDATTALSHLRTDGSVIKIIFSNTHR FT NIFGKYNINLELDGNEKEDVKKGLIDKVKVKFTNKKDKKSKIIEFTFTGFKVIQKSPDK FT ENKNSKKNYIKKKEKIDNKLTGLYPSLVAYMIMYTQEPKNYKNLMQKDSINFEELENNN FT PNLFADPEINLNVVALKDLLLEYNRELGKLYKDKVIAVSYDDVNGKLGLKLLIENREEN FT DTIASKYSETLEFDFVGFRKIDLKNPNKNVLSLLFPQNNFKDMIKNNVFKKKIEVLKSG FT KQKEDMVLVKEEYAKQLIFKNLLVQIIDNENNLYRSTQTLSLQNNKKDNYTSILGLAGG FT GTLYPFHTIINNNSIKNIYLMINKEKNKKYKVAINFEVDIPIFASTTSDLTFHATSGDT FT NILKLDITTNALID" FT gene 1275..2873 FT /gene="p72" FT CDS 1275..2873 FT /codon_start=1 FT /transl_table=4 FT /gene="p72" FT /product="immunodominant protein P72" FT /note="immunogenic P72" FT /db_xref="GOA:P55801" FT /db_xref="InterPro:IPR019992" FT /db_xref="UniProtKB/Swiss-Prot:P55801" FT /protein_id="AAC44571.1" FT /translation="MKKATKLLLSILPISSISFLSVVSCSTRNSNAKQPDKKPEKPNEN FT TPKTPSKPDESKQPDNNNTNPGDSNNGSNNPEIKPDPSENPQSDQPMDKPDEKIDKPSH FT SDKPQADDSNNNRDIFSDLDKISKEISFETFSFYTQRDAVTALVDLQKDPSTIYTIFSK FT DYKTIFDKYHIQFLANNEESANNEKGLIEKVKLKFTHKKFDQSKILDFIFTGFKKNEYT FT SITNNKEKYITKREKVEKITDLFPSLIGYVLLYSQDHNQYKNLMEAKNVINFEDLENGN FT SSLFIDKAPLLNVATIKDYLFEFNPELGKLYKEKITAVKYDDYNGILGVKLEIENRDFD FT PKTTKEPIIEKEFVFDNFRKVNIKDNEKNPLSLFLTQDKFKEMTKSGLLKTKIQELRSS FT NKLEKKELLQDKKIDFLKQQIFKNLLVDINDNSHNIYRSQSTLSLGSNKTYKSILGLAG FT GFSIYPFHTSINKDLIKNIYLSINKDEENVHKAIIEFEVYIPVFSTGFSDLKSYATSGD FT EKYLVLKIVQTTSIQ" FT repeat_region 2903..4387 FT /mobile_element="insertion sequence:IS1296" FT repeat_region complement(2903..2932) FT /rpt_type=INVERTED FT /note="IR-L" FT CDS complement(3795..4337) FT /codon_start=1 FT /transl_table=4 FT /product="ORFA" FT /db_xref="UniProtKB/Swiss-Prot:Q50239" FT /protein_id="AAC44572.1" FT /translation="MSKLNLEKKLKIVKEAKKLNIKKSTYLANKYDISVDTVESLVNRF FT EAFRIEGLINKEKKPYYSAKLKLKIVLYKLETNHSYDEVAKKFNIIYSSTIAGWVKKYR FT EYGFLGLNNNIGRPKKIMKNPNKKPAKIKKSQVKINNDQQIKELKEQVEYYKLEAEFWK FT KFHTLLTKEKSTRKKQK" FT misc_structure complement(3810..3838) FT /note="hairpin structure" FT RBS complement(4344..4348) FT repeat_region complement(4358..4387) FT /rpt_type=INVERTED FT gene complement(4413..>5085) FT /gene="mtlD" FT CDS complement(4413..>5085) FT /codon_start=2 FT /transl_table=4 FT /gene="mtlD" FT /product="mannitol-1-phosphate dehydrogenase" FT /db_xref="GOA:P55800" FT /db_xref="InterPro:IPR000669" FT /db_xref="InterPro:IPR008927" FT /db_xref="InterPro:IPR013118" FT /db_xref="InterPro:IPR013131" FT /db_xref="InterPro:IPR013328" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:P55800" FT /protein_id="AAC44573.1" FT /translation="IKNNQKLIIMCCENGIRVSSLFKSYFSNLNNNIYFVDVLVDRIVS FT NKNILNDYLECEDYYLWIVDKTQLPRDFKQVPNLTYTTSLDIQITKKIYMLNALHCSLA FT WFVFKNFSFNKYLYVYQALKNDKVVEFVNNYLNEVILVLNHKYNINLDELNNYKNQIIK FT RLNSNFIKDDLKRLARNTELKLSKNERILTILDYAKDNNLKHDILLLSYQNGLEYLKNN FT K" XX SQ Sequence 5085 BP; 2017 A; 630 C; 571 G; 1867 T; 0 other; gatctagaca aattacctaa agaaatctca tttgaaaggt ttgattttta tacatcaaaa 60 gatgccacaa ctgcactaag tcatttaaga acggatggtt cagttattaa aattattttt 120 tcaaacactc atagaaatat ttttggaaaa tataatatta atttagaatt agatggaaat 180 gaaaaagaag atgttaaaaa aggcttgata gataaagtaa aagttaaatt tactaataaa 240 aaagataaaa aatctaaaat tattgagttt acttttactg gttttaaagt aattcaaaaa 300 agtcctgata aagaaaataa aaatagcaaa aaaaattata taaagaaaaa agaaaaaata 360 gataataagt taaccggttt atatccatca ttagttgcat atatgattat gtatactcaa 420 gaacctaaaa attataagaa tttaatgcaa aaagattcaa taaattttga ggaactagaa 480 aataataacc ctaacctatt tgcagaccca gaaattaatc ttaatgttgt tgcattaaaa 540 gacttattgc ttgaatataa tagagagtta ggaaaacttt ataaagataa agtaattgcc 600 gttagttatg atgatgttaa tggtaaatta ggtttaaaat tgttaattga aaatagagaa 660 gaaaacgata caatagctag caaatattca gaaactttag agtttgattt tgtaggattt 720 agaaaaattg atttaaaaaa tccaaataaa aacgtattat ctttattatt tccacaaaat 780 aattttaaag atatgattaa aaataatgtt tttaaaaaga aaatagaagt cttgaaatcg 840 ggaaaacaaa aagaagatat ggtgttggta aaagaagagt atgcaaaaca actaattttt 900 aaaaatttat tagttcaaat aattgataat gaaaataatt tatatagatc aacacaaact 960 ttgagtcttc aaaataataa aaaagataat tatacttcta tattaggatt agctggtgga 1020 ggaactttat atccgttcca tactataatt aataataatt caattaaaaa tatttattta 1080 atgattaata aagaaaaaaa taaaaaatat aaagtagcaa ttaactttga agttgatatt 1140 cctatatttg catcaacaac tagtgattta acttttcatg caacaagtgg tgatacaaat 1200 atattaaaac tagacattac tacaaatgct ttaattgatt aattatatat gtcattagaa 1260 atgagagata tattatgaaa aaagcaacta aattattact ttctatctta ccaatttcat 1320 caattagttt tttaagtgta gtttcatgtt caacaagaaa ttcaaatgca aaacaaccag 1380 ataaaaagcc tgaaaaacca aatgaaaaca ctccaaaaac accatcaaaa ccagatgaat 1440 caaaacaacc agataacaac aatacaaatc caggtgattc aaataatggt tcgaataacc 1500 cagaaattaa gcctgatcct agtgaaaatc cacaatcaga ccaaccaatg gataaacctg 1560 atgaaaaaat tgacaagcca agtcattcag ataaaccaca agcagatgat tctaacaaca 1620 atagagacat tttttctgac ctagacaaaa tatctaaaga aatttcattt gagacatttt 1680 ctttttatac tcaaagagat gcagttactg cacttgttga tttgcaaaag gatccatcaa 1740 caatttatac aattttttct aaagattata aaactatatt tgataaatat catattcagt 1800 tcttagcaaa caatgaagaa agtgctaata atgaaaaggg tctaattgaa aaggttaaac 1860 ttaaattcac tcataagaaa tttgatcaat caaagatatt agattttatt ttcaccggat 1920 ttaaaaagaa tgaatatact agtattacaa ataataaaga aaaatatata acaaaaagag 1980 aaaaagtaga aaaaataaca gatttatttc catcattaat aggttatgtg ttgttataca 2040 gtcaagatca taatcaatat aagaatttaa tggaagcaaa aaacgttatt aattttgaag 2100 acttagaaaa tggtaattca tcattattta tagataaagc acctttgctt aatgttgcaa 2160 ctattaaaga ttatctattt gaatttaatc ctgaattagg taaactttat aaagaaaaaa 2220 taacagcagt taaatatgat gattacaatg gtattctagg tgtaaaacta gagatagaaa 2280 atagagattt tgatcctaaa actacaaaag aaccaatcat agaaaaagag tttgtttttg 2340 ataattttag aaaagtgaat ataaaagata atgaaaagaa tccactatct ttatttttaa 2400 ctcaagacaa atttaaagaa atgacaaaaa gcggattatt aaaaactaaa atacaagaac 2460 ttagatcttc aaataagtta gaaaaaaagg aactacttca agacaaaaaa atagactttc 2520 ttaaacaaca aatatttaaa aacttattag tagatataaa tgacaattca cataatatat 2580 atagatcaca atcaacttta agtttaggtt ctaataagac ttataaatca attttaggtc 2640 tagcaggtgg tttttcaatt tatccattcc atacttcaat taataaagac ttaatcaaaa 2700 atatctattt atcaattaat aaagatgaag aaaatgtaca taaagcaata atagaatttg 2760 aagtttacat acctgttttt tctacaggat ttagtgatct aaaatcttat gcaacaagcg 2820 gagatgaaaa atatttagtt ttaaaaattg tacaaactac ttcaattcaa taaatttata 2880 taaatactaa aaaaacttag acccccccgc taccataaac acggactaaa atttttcaat 2940 attataacag gattgttttc tgaattgtac aggagacaat ccttttaatt tttcttttat 3000 tcttatgttg ttatatcaat aaatatattt atgaattctt ttagttaact cttctactga 3060 attatatttt tcaccataat aaatttcttg ctttaataaa ccaaagaagt tttctataat 3120 agcattatct aagcaattac cttttctaga catactttgt gttatgttat tttcttctag 3180 ttttttagct caactaatgt gctgataatg aaatccctga tcagaatgaa tcaacaaacc 3240 atttgtattt ttaacatttt taagtgcttt gtctagcatt gaatttgtta ggtttaagtt 3300 aggattggtt tgaattgaat atgaaataat ttcatcattg taaagatcaa taattggtga 3360 taaatataac ttttgaccat taactttaaa ctctgttaca tcagtgcatc aaagtttgtt 3420 tgcttgtaaa gaatgaaaat ttctttttaa aacattatct gcaatttttc caacagttcc 3480 tttataagaa ctatatcttc cattttttgt tctaaattta atacactgaa ctccaagctc 3540 tttagttaac cttaaaatct ttttgtgatt tacaatatat ccttttgatt ttaaggccat 3600 ttttagcctt ctatgcccat acgtttcaaa tgatttgcta aaaatgtcaa caatcatttc 3660 ctttaattct ttatctttat ctattgtatt ttctaactta tgttttcatt cataaaaaga 3720 cgatttaggt aatttagcta tttttaagag aataggaatc ttaacttttt tatgtgtttt 3780 taacaattct aaaactactt ttgttttttc cttgttgatt tttcttttgt caacaaggtg 3840 tggaactttt ttcagaattc agcctccaac ttatagtatt ccacttgttc ttttaattct 3900 ttaatttgtt ggtcattatt gatttttact tgtgatttct ttattttagc tggtttttta 3960 ttagggtttt tcataatttt cttaggtctt cctatattat tatttaaccc taaaaatcca 4020 tattctctat attttttaac tcaaccagct atagttgatg aataaataat attaaacttt 4080 tttgcgactt catcatatga gtgattagtt tcaagtttat ataatacaat ttttagtttt 4140 agctttgcac tataataagg ctttttttcc ttattaatta gcccttctat tctaaacgct 4200 tcaaatctat taactaaact ttctacagta tcaactgaaa tatcatattt atttgctaaa 4260 taagtactct ttttaatatt aagtttttta gcttctttaa caatttttaa ctttttttct 4320 aaatttaatt tagacatata aaaaccccat ttcctggatt ttagtccgaa atatggggtt 4380 cgggagagac tacatctagg tttttttatt ttctatttat tattttttaa atattctaat 4440 ccgttttgat agcttaacaa aagtatgtcg tgttttaaat tattatcttt agcataatct 4500 aaaatagtta aaattctttc atttttactt agttttaatt cagtatttct agctaatctt 4560 ttaagatcat cttttataaa attactattt aatcttttaa ttatttgatt tttataatta 4620 tttaattcat ctaaattaat attatattta tgatttaaaa ctaaaataac ttcatttaaa 4680 taattattaa caaattcaac cactttatca ttttttaagg cttgataaac atataaatac 4740 ttgttaaaac taaagttttt aaaaacaaac caagctaaag aacaatgcaa agcatttaac 4800 atataaatct ttttagttat ttgtatatcc aaactagttg tataagttaa gttaggtact 4860 tgtttaaaat cacgtggtaa ttgagtttta tcaacaattc ataaataata atcttcacat 4920 tctaaataat catttagaat gtttttatta ctaactatcc tatcaactaa aacatcaaca 4980 aaataaatat tattgtttaa attagaaaaa taagacttaa ataagctact aactctaatt 5040 ccattttcac aacacataat aattagtttt tgattatttt tgatc 5085 // |
|