 |
|
EBI DbfetchID U58147; SV 1; linear; genomic DNA; STD; PRO; 3259 BP. XX AC U58147; XX DT 25-JUN-1996 (Rel. 48, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Haemophilus ducreyi ribosomal protein L31, LOS biosynthesis enzyme LBGA, DE LOS biosynthesis enzyme LBGB, and exonuclease III genes, complete cds. XX KW . XX OS Haemophilus ducreyi OC Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; OC Pasteurellaceae; Haemophilus. XX RN [1] RP 1-3259 RX PUBMED; 9009327. RA Stevens M.K., Klesney-Tait J., Lumbley S., Walters K.A., Joffe A.M., RA Radolf J.D., Hansen E.J.; RT "Identification of tandem genes involved in lipooligosaccharide expression RT by Haemophilus ducreyi"; RL Infect. Immun. 65(2):651-660(1997). XX RN [2] RP 1-3259 RA Stevens M.K., Klensey-Tait J., Lumbley S., Joffee M.A., Radolf J.D., RA Hansen E.J.; RT ; RL Submitted (13-MAY-1996) to the EMBL/GenBank/DDBJ databases. RL Microbiology, UT Southwestern Medical Center, 6000 Harry Hines Blvd., RL Dallas, TX 75235-9048, USA XX FH Key Location/Qualifiers FH FT source 1..3259 FT /organism="Haemophilus ducreyi" FT /strain="35000" FT /mol_type="genomic DNA" FT /db_xref="taxon:730" FT CDS 213..425 FT /codon_start=1 FT /transl_table=11 FT /product="ribosomal protein L31" FT /db_xref="GOA:Q59450" FT /db_xref="InterPro:IPR002150" FT /db_xref="UniProtKB/Swiss-Prot:Q59450" FT /protein_id="AAB49622.1" FT /translation="MKQGIHPEYKEITATCSCGNVIKTRSTVEKNLNLDVCGNCHPFYT FT GKQRVVDTGGRVERFNKRFNIPSTK" FT CDS 511..1185 FT /codon_start=1 FT /transl_table=11 FT /gene="LBGA" FT /product="LOS biosynthesis enzyme LBGA" FT /db_xref="GOA:Q47960" FT /db_xref="InterPro:IPR002654" FT /db_xref="UniProtKB/TrEMBL:Q47960" FT /protein_id="AAB49623.1" FT /translation="MDEFPPIFIISLKDSPRKNIIAERLNALGLSFNFFDAIYGKELSK FT KQLSEINYDFYIQKFNARKRLTLGEIGCAISHIKLYEYIVKNNINEAIILEDDAIVSIY FT FKDIICDALKKISCKYEILFLDHGKAKIFPFTRSLVERYRLAKYISPSKKSKRIIIRTT FT AYIITLNGARKLLNYAYPIRMPSDYLTGTLQLTGINAYGIEPPCVFGGPISEIDQIEDR FT YC" FT CDS 1186..2217 FT /codon_start=1 FT /transl_table=11 FT /gene="LBGB" FT /product="LOS biosynthesis enzyme LBGB" FT /db_xref="GOA:Q47961" FT /db_xref="UniProtKB/TrEMBL:Q47961" FT /protein_id="AAB49624.1" FT /translation="MNLKEKLRKLRIAFGKLVLDRKISFTKLRLPPKKILFLRQDGKIG FT DYIVSSFVFREIKKQLPNIEIGVICSDKNAYLFNKNAYIDHCYIVRTRNILDYLKCGMK FT LANQKYDLVIDPTIALRNRDLLLLRVINAKHYIGYEKTNYQLFDFNIKNEKKHISTVYK FT RALELIGLNHIDISYDIPLNKDSHERIKIYLSESCLDSFIALNLFGASSTRSFNDNKIY FT ELLEYLKKNTNKPILLLTFPAIARKLKKIACHFSEVFIYEHTKTVFDTIELIRFADLVI FT SPDTSIVHIAVGLNKKLIAFYSLDEQNFIHWQPNNLVETHILRFEHNINEINISEIQAK FT WLN" FT CDS complement(2232..3035) FT /codon_start=1 FT /transl_table=11 FT /product="exonuclease III" FT /db_xref="GOA:Q47962" FT /db_xref="HSSP:1AKO" FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:Q47962" FT /protein_id="AAB49625.1" FT /translation="MKFISFNINGLRARPHQLEAIINKHQPDVIGLQEIKVADEDFPHQ FT LVEHLGYHVFYHGQKGHYGVALLTKKQPLTIRKGFPNDTADAQKRMIMAEINTDFGILT FT VLNGYFPQGENRQHETKFPAKAKFYADLQHYLETALTAYNPIIIMGDMNICSTDLDIGI FT GEANRKRWLREGKCSFLPEEREWLDRLYHYGLVDTFRAMHPTTTDQFSWFDYRSKGFND FT NRGLRIDLILASTTLANHCVETGIDLEIRAMEKPSDHAPIWAVFK" XX SQ Sequence 3259 BP; 1125 A; 458 C; 562 G; 1114 T; 0 other; ggatcttccc tagaagtact ctcgagaagc tttttgaatt ctttggatct ttattctaaa 60 ataaaataga atttgctttc ttttggcgtt gagtaattta ctcaacatat ttttagttac 120 atatggtact tatcagcgga tgtcattaaa taatataaat catttaactg caacaagata 180 agtggcgata tggcttcatc agaggttctc caatgaaaca aggtattcac ccagaatata 240 aagaaattac ggcaacatgt tcttgcggta atgtaattaa aacacgctca acagtagaga 300 aaaatttaaa tttagacgta tgtggtaatt gccacccatt ctatacaggc aaacagcgtg 360 tagttgacac cggcggtcgt gttgaacgtt tcaataaacg ttttaatatc ccgagcacta 420 aataattagt gttttgtcaa taaaaccctg caatagcagg gttttattgt aataagtaaa 480 aatttttctt attaaataaa gtgaaataat atggatgaat tccctcctat ttttattatt 540 agtttaaaag attcacctag gaaaaatatt attgcagaac gtttaaatgc attaggatta 600 tcttttaatt tttttgatgc gatttatggc aaagaacttt ctaaaaaaca attgtcggaa 660 ataaattatg atttttatat acaaaaattt aatgcaagaa agcgccttac tttaggagaa 720 attggttgtg caattagtca tattaaattg tatgaatata ttgtaaaaaa taatattaac 780 gaggcaatta ttttagagga tgatgctata gtatctattt attttaaaga tattatatgt 840 gatgcattaa aaaagatttc ttgtaaatat gagatattat ttttagatca tggtaaggct 900 aaaatattcc cttttactag gagtttagtt gaaagatata gattagctaa atatatttct 960 ccatcgaaaa aatctaaaag aattattatt cgtactacag catatattat tacgttaaat 1020 ggtgctcgta agctactaaa ttatgcgtat cctattcgta tgccatcaga ttatttaact 1080 gggacacttc aattaacggg aataaatgct tatggtattg agcccccttg cgtttttggt 1140 gggccaattt ctgaaattga tcaaatagaa gatagatatt gttaaatgaa tcttaaagaa 1200 aaattaagaa aattacgtat agcatttggt aaattggttt tagatagaaa aatatcattt 1260 actaaattaa ggttgcctcc taaaaaaatt ctttttctta ggcaagatgg taagataggt 1320 gattatattg ttagttcttt tgtttttcgt gaaataaaga agcaattacc taatattgag 1380 ataggcgtta tttgttcgga taaaaatgct tatttattta ataaaaatgc ttacatagac 1440 cattgttata ttgttcgaac aaggaatata ttagactatt tgaaatgtgg tatgaagtta 1500 gccaatcaga aatatgattt agttattgat cctactatag cattacgtaa tagggattta 1560 ttgcttttga gagttattaa tgctaaacat tatataggtt atgagaaaac taattatcaa 1620 ttgtttgatt ttaatataaa gaatgagaaa aagcatattt caacagtcta taaaagagcc 1680 ttagaattaa taggactaaa ccatatagat ataagctatg atattccatt aaacaaagac 1740 agtcatgaaa gaataaaaat atatctatct gagtcttgtt tagatagctt tatcgcactt 1800 aatttatttg gagctagttc tactaggtct ttcaatgata ataagatata tgaattgctt 1860 gaatatttga agaaaaatac aaataaacca attttattgt taacattccc tgcaatagct 1920 agaaaattaa aaaaaattgc ttgtcatttt tcggaagtat ttatctatga acatacgaaa 1980 acagtgtttg atactataga attaatacgt tttgctgatt tggttatttc acctgatact 2040 tctattgtgc atattgctgt tggacttaat aaaaaattaa ttgcatttta tagtcttgat 2100 gaacaaaatt tcattcactg gcaaccaaat aatttagttg aaacacatat tttgcgtttt 2160 gaacataaca taaatgaaat aaatatttca gaaattcaag caaagtggtt aaattaataa 2220 tacgttttga attatttaaa tactgcccaa ataggggcat gatcagaggg tttttccata 2280 gctctgattt ctaaatcaat tcctgtttct acacaatggt ttgctagtgt tgttgaagct 2340 aaaattaagt caattcgtaa cccacggttg tcattaaaac ctttagagcg ataatcaaac 2400 catgagaatt gatcagttgt agttggatgc attgcacgga aagtatctac taaaccatag 2460 tgatataaac ggtctaacca ttcgcgttct tctggtaaga aagaacattt gccttctctt 2520 agccaacgtt tacgatttgc ttcaccaatc ccaatatcta aatccgtaga gcagatattc 2580 atatcaccca taataataat agggttgtat gctgttaggg cggtttctaa ataatgttgt 2640 aggtcagcat agaattttgc tttagcagga aattttgttt catgctggcg attttcacct 2700 tgtgggaagt agccatttag tacggttagg ataccaaaat cagtgttaat ctctgccata 2760 atcattcgct tttgggcatc agctgtatca tttggaaagc ctttacgaat ggtaagcggt 2820 tgttttttag ttaaaagtgc tacgccataa tggccttttt ggccatgata aaaaacgtga 2880 tagcccagat gttctacaag ttgatgtggg aaatcttcat ctgcaacttt gatttcttgt 2940 aagccgatca catcaggctg atgtttattg atgattgctt ctaattgatg tggtctagca 3000 cgtaagccat tgatattaaa agagataaac ttcataaaaa ccttaatagg gaaaatgtta 3060 taacgtcatc gcagcaatcc aaccaaagat taataatgga atgctaaaat gtaagaaagt 3120 agggacgaca gaatcccaaa tgtgatcatg tttgccatca gcatttaagc ctgatgtagg 3180 gcctaatgtt gagtcagaag ctggcgagcc tgcatcgcct aaggcggcgg caacgcccac 3240 aatcgccatg ggaagatcc 3259 // |
|