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EBI DbfetchID U50952; SV 1; linear; genomic DNA; STD; PRO; 5370 BP. XX AC U50952; XX DT 06-APR-1996 (Rel. 47, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Thermoanaerobacterium thermosulfurigenes endoxylanase precursor (XynA) and DE membrane component of an ABC transporter (XynB) genes, complete cds and DE XynC (xynC) gene, partial cds. XX KW . XX OS Thermoanaerobacterium thermosulfurigenes OC Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; OC Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium. XX RN [1] RP 1-5370 RA Matuschek M., Sahm K., Bahl H.; RT ; RL Submitted (07-MAR-1996) to the EMBL/GenBank/DDBJ databases. RL Markus Matuschek, Department of Microbiology, University of Goettingen, RL Grisebachstrasse 8, Goettingen 37077, Germany XX DR CABRI; DSM 3896. XX FH Key Location/Qualifiers FH FT source 1..5370 FT /organism="Thermoanaerobacterium thermosulfurigenes" FT /strain="EM1 (DSM 3896)" FT /mol_type="genomic DNA" FT /db_xref="taxon:33950" FT CDS <1..422 FT /codon_start=3 FT /transl_table=11 FT /gene="xynC" FT /product="XynC" FT /note="Description: membrane component of an ABC FT transporter" FT /db_xref="GOA:Q56393" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q56393" FT /protein_id="AAB08044.1" FT /translation="PLMALSDMWKEVGWNSIIYLAAMTAIDSELYEAASIDGAGRIRRI FT FSITLPSIVPTIKILLILNAGWILNAGFEQVFLLSNPMVIDYSQTLELYVYNYGIPMGR FT FSFATAAGIFNSVVSLAMVTLANRISKALSGESAF" FT RBS 441..446 FT /gene="xynB" FT CDS 454..1359 FT /codon_start=1 FT /transl_table=11 FT /gene="xynB" FT /product="XynB" FT /note="Description: membrane component of an ABC FT transporter" FT /db_xref="GOA:Q56394" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q56394" FT /protein_id="AAB08045.1" FT /translation="MAKNNRIRLSTEDIVFDTINYILLTIVIIVTLYPFVHVLAVSFND FT AIDTVRGGIYLFPRKFTTFNYVSILSDPEIYNATIISALRAVIGSVLNVIASIIVAYAI FT SRRDFVLRGIVSKIFTYSMYFTSGLIPYYLLIRDLHLMNNFLVYILPGIVSAWNIMVVR FT SYIDGLPASLVESAKIDGASELRIIFSIIFPLSVPVLATITLFVAVGQWNSWFDTMLFC FT SMNPNLSTLQYELQKVLQSTQQFTQQASFDMGLRNNSNSVTPESIRAAMTVVAVVPIMM FT VYPFLQKYFVKGLTIGSVKG" FT RBS 1476..1481 FT /gene="XynA" FT CDS 1490..5194 FT /codon_start=1 FT /transl_table=11 FT /gene="xynA" FT /product="XynA precursor" FT /EC_number="3.2.1.8" FT /note="Description: endoxylanase" FT /db_xref="GOA:Q60046" FT /db_xref="HSSP:1I8A" FT /db_xref="InterPro:IPR001000" FT /db_xref="InterPro:IPR001119" FT /db_xref="InterPro:IPR003305" FT /db_xref="InterPro:IPR008960" FT /db_xref="InterPro:IPR008979" FT /db_xref="InterPro:IPR010502" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR015922" FT /db_xref="InterPro:IPR017853" FT /db_xref="InterPro:IPR018087" FT /db_xref="UniProtKB/TrEMBL:Q60046" FT /protein_id="AAB08046.1" FT /translation="MKSIVNRVVSIVTALIMIFGTSLLSQHIRAFADDTNTNLVSNGDF FT ETGTIDGWIKQGNPTLEVTTEQAIGQYSMKVTGRTQTYEGPAYSFLGKMQKGESYNVSL FT KVRLVSGQNSSNPFITVTMFREDDNGKHYDTIVWQKQVSEDSWTTVSGTYTLDYTGTLK FT TLYMYVESPDPTLEYYIDDVVVTPQNPIQVGNVITNGTFENGNTSGWVGTGSSVVKAVY FT GVAHSGGYSLLTTGRTANWNGPSYDLTGKIVPGQQYNVDFWVKFVNGNDTEQIKATVKA FT TSNKDNYIQVNDFVNVNKGEWTEIKGSFTLPVTDYSGVSIYVESQNPTLEFYIDDFSVI FT GEISNNQITIQNDIPDLYSVFKDYFPIGVAVDSSRLNDADPHAQLTAKHFNMLVAENAM FT KPESLQPTEGNFTFDNADKIVDYEIAHNMKMRGHTLLWHNQVPDWFFQDPSDPSKPASR FT DLLLQRLRTHITTVLDHFKTKYGSQNPIIGWDVVNEVLDDNGNLRNSKWLQIIGPDYIE FT KAFEYAHEADPSMKLFINDYNIENNGVKTQAMYDLVKKLKSEGVPINGIGMQMHISINS FT NIDNIKASIEKLASLGVEIQVTELDMNMNGNVSNDALLKQARLYKQLFDLFKAEKQYIT FT AVVFWGVSDDVSWLSKPNAPLLFDSKLQAKPAYWAIVDQGKAIPDIQSAKALEGSPTIG FT ANVDSSWKLVKPLYANTYVKGTIGATAAVKSMWDTKNLYLLVQVSDNTPSNNDGIEIFV FT DKNDNKSTTYESDDEHYIVKRDGTGSSNITKYVMSNADGYVAQIAIPIEDISPVLNDKI FT GFDIRINDDQGSGNINAITVWNDYTNSQDTNTAYFGDLVLSKPAQIATAIYGTPVIDGK FT VDGIWNNAEAISTNTWVLGSNGATATAKMMWDDKYLYILADVTDNNLNKSSVNPYEQDS FT VEVFVDQNNDKTTYYENDDGQFRVNYDNEQSFGGSTNSNGFKSATSLTQNGYIVEEAIP FT WTSITPSNGTIIGFDLQVNDADENGKRTGIVTWCDPSGNSWQDTSGFGNLMLTGKPSGV FT LKKVVAFNDIKDNWAKDVIEVLASRHIVEGMTDTQYEPNKTVTRAEFTAMILRLLNIKE FT EAYSGEFSDVKSGDWYANAIEAAYKTGIIEGDGKNARPNDSITREEMTAIAMRAYEMLT FT QYEEENIGATTFSDDKSISDWARNVVANAAKLGIVNGEPNNVFAPKGNATRAEAAAIIY FT GLLEKTNKL" FT sig_peptide 1490..1585 FT /gene="xynA" FT /product="XynA precursor" FT mat_peptide 1586..5191 FT /gene="xynA" FT /product="XynA" FT misc_feature 1586..2059 FT /gene="xynA" FT /note="encodes xylanase domain A1" FT misc_feature 2060..2521 FT /gene="xynA" FT /note="encodes xylanase domain A2" FT misc_feature 2522..3532 FT /gene="xynA" FT /note="encodes xylanase catalytic domain; glycosyl FT hydrolases family 10 catalytic domain" FT misc_feature 3533..4057 FT /gene="xynA" FT /note="encodes cellulose binding domain 1" FT misc_feature 4058..4627 FT /gene="xynA" FT /note="encodes cellulose binding domain 2" FT misc_feature 4652..5191 FT /gene="xynA" FT /note="encodes surface layer homology domain, SLH domain" FT terminator 5193..5238 FT /gene="xynA" XX SQ Sequence 5370 BP; 1873 A; 772 C; 1116 G; 1609 T; 0 other; ggcctttaat ggcgctttcg gacatgtgga aagaagttgg atggaattca attatttatc 60 tggcggcaat gactgctata gacagtgagt tatatgaagc ggcaagtatt gatggagcag 120 gtagaataag aagaattttc tccataacat taccatcaat agtgccaacc ataaaaatcc 180 ttttaatatt aaatgcagga tggatactaa atgctggatt tgaacaagta tttctattgt 240 caaatcccat ggtcatagac tattcacaga cattggaatt gtatgtatac aattatggta 300 taccaatggg cagattttca tttgcgacag cagccggtat atttaactca gttgtttctt 360 tagcaatggt tacattagca aatagaatat cgaaagcact tagcggtgaa agtgcatttt 420 aatctaattt acaagatttc agggggttat aaagtggcta aaaataatag aataaggttg 480 agcacagaag atattgtatt tgacacgatt aattacattc ttctcacgat tgtaataata 540 gtcaccctgt atccgtttgt acatgtgttg gcagtttcat ttaacgatgc tatagatact 600 gtgaggggtg gaatttatct atttccaaga aaatttacga cttttaatta cgtttcaatt 660 ttaagcgatc ctgagattta caatgctaca atcatttcag cattaagagc tgttataggt 720 tctgttttaa atgtgattgc cagcataata gttgcatatg ccataagcag aagggatttt 780 gttttaagag gaattgtttc aaaaatattt acttactcaa tgtattttac aagtggctta 840 attccatatt acttgctgat tagagattta catcttatga acaatttctt ggtttacatc 900 ttgccaggga tagtaagcgc atggaatata atggttgtta ggagctatat tgatggcttg 960 ccagccagtc ttgtggaatc ggcaaaaata gatggcgcta gtgagctgag gataatattt 1020 tctatcatat ttccacttag tgttccagta ttagcgacaa taacgctttt tgttgcagtt 1080 ggacaatgga attcgtggtt tgatacaatg cttttttgtt ccatgaatcc caatttaagc 1140 acattacagt atgaattgca aaaagtattg cagtcgactc aacagtttac acagcaagcg 1200 tcttttgata tggggttaag aaataattct aattcagtta ccccggaaag cataagagct 1260 gctatgacgg tagtggcagt ggttcctatt atgatggttt atccattctt gcagaagtat 1320 tttgtaaagg gtttgaccat tggcagtgtt aagggttagt acatctttgg ttttttataa 1380 atgctgaaag gggggaattt aaaaatactt attagacaaa attttttaat tgcgaggtga 1440 tagtaaataa atttttcaat aattaaattt actgagggag gaagtaagaa tgaagagtat 1500 tgtaaacaga gttgtatcta tcgttacagc tttaataatg atttttggga catcactgct 1560 ttcacaacac ataagggcat ttgctgatga cactaataca aatctggttt ctaatgggga 1620 ctttgagaca ggcacaattg atggctggat taagcaaggt aatcctacat tagaagtaac 1680 gactgaacaa gcaattgggc aatacagtat gaaagttacg ggtagaacac agacatatga 1740 aggacctgca tatagctttt taggaaaaat gcagaaaggt gaatcatata atgtatcgct 1800 taaagttaga cttgtttctg gacaaaattc ttctaatcct tttattaccg tgactatgtt 1860 tagagaagat gacaatggca agcattatga tacaatagtt tggcaaaaac aagtttctga 1920 agattcatgg actactgtaa gcgggactta tacattagat tatactggaa cattaaaaac 1980 attatacatg tatgtagaat cacccgatcc aacgctggaa tactatattg atgatgttgt 2040 agtgacacca caaaatccaa tacaagtagg aaatgtgatt accaatggaa cttttgaaaa 2100 tggaaatact tcaggatggg ttggaacagg ctcatctgtt gttaaggcag tgtatggagt 2160 ggctcatagc ggaggttata gtttattgac gacagggaga acagctaatt ggaatggtcc 2220 tagctatgat ttgactggca aaatagtacc aggtcaacaa tacaatgttg atttttgggt 2280 gaaatttgtt aatggcaatg atacagaaca aataaaggct actgttaaag cgacttctaa 2340 caaagacaat tatatacaag ttaatgattt tgtaaatgta aataaaggcg aatggacaga 2400 aataaaaggc agttttactt tacctgtgac agattacagc ggtgtcagca tctatgtaga 2460 atctcaaaat cctactttag agttttacat tgatgatttt tctgtaatag gtgaaatttc 2520 aaataatcag attacaatac aaaatgatat tccggattta tattcagtat tcaaagatta 2580 tttccccatc ggtgttgcag ttgattcgag tagattaaat gatgctgatc cacatgctca 2640 attgactgct aaacatttta atatgcttgt tgcagaaaat gccatgaaac cggaaagctt 2700 gcagcctaca gagggaaact ttacctttga taatgctgat aagattgttg attatgaaat 2760 agcacataat atgaagatga gaggtcatac attgctttgg cataatcagg ttccggattg 2820 gtttttccag gacccatctg atccgtctaa accagcttca agggatctgc tgcttcaaag 2880 attaagaacg cacataacaa ctgtgttaga tcattttaaa acaaaatacg gttctcaaaa 2940 tccaataatc ggatgggatg ttgtaaatga ggttcttgat gataatggca atttaagaaa 3000 ttctaagtgg ttacaaatta taggacctga ttatatagaa aaagcttttg aatatgcgca 3060 tgaggcagat ccatctatga aattgtttat taatgattac aacatcgaaa ataatggcgt 3120 taaaacacag gcaatgtatg atttagtgaa aaagttaaaa agtgaaggtg tgcctataaa 3180 cggaataggc atgcaaatgc acataagcat aaattcaaat atagacaata taaaagcttc 3240 tatagaaaaa cttgcatcat taggtgtgga aatacaggta actgaattag atatgaacat 3300 gaatggtaat gtatctaacg acgcattgct taagcaagcg agattgtata aacaattatt 3360 tgacttattt aaagcagaaa aacaatatat aactgctgta gttttttggg gagtttcaga 3420 tgatgtaagt tggcttagta agccaaatgc tccactactt tttgattcaa agttacaggc 3480 aaagccagca tactgggcaa ttgtagatca aggcaaagcc atacctgaca ttcaatctgc 3540 aaaagcttta gaaggatcac cgacgattgg tgcaaatgtt gatagttctt ggaaacttgt 3600 aaaaccattg tatgctaata cttatgtgaa aggaactatt ggagcaactg ctgctgttaa 3660 atctatgtgg gatactaaaa acttatattt gttagtacaa gtttcagaca atactccatc 3720 taataatgat ggtatcgaga tttttgtgga taagaatgac aacaaatcta ctacctatga 3780 aagtgacgat gaacattata tagttaagag ggatggtaca gggagttcaa atattacaaa 3840 gtatgtaatg tctaatgctg atggatatgt agcacagata gctattccaa ttgaagacat 3900 tagtcctgtg ctgaatgata aaattggatt tgatatcaga ataaatgatg accaaggcag 3960 tggcaatata aatgcgataa cagtttggaa tgattataca aacagtcaag atactaatac 4020 agcatatttt ggagatttag tattatcaaa acctgcacag attgcaacag ctatatatgg 4080 cactcctgtt attgacggta aagtagatgg tatttggaat aatgctgaag ctatttcgac 4140 aaatacatgg gtcttgggtt caaatggtgc tactgcaaca gcaaaaatga tgtgggacga 4200 taaatatctt tatatattgg cagatgtaac agataacaat ttaaataaat ccagtgtgaa 4260 tccttatgaa caggattctg tggaagtttt tgtagatcag aataatgata agacaactta 4320 ttatgaaaat gatgatgggc agtttagagt taactatgat aatgaacaaa gttttggagg 4380 aagcactaat tcaaatggat ttaagtcggc aacaagtctt acacaaaatg gatatattgt 4440 agaagaagct attccttgga cgagtattac tccgtcaaat ggtactatca tagggtttga 4500 cttgcaagtt aacgatgcag atgaaaatgg taagaggaca ggtattgtca catggtgtga 4560 tccaagcgga aattcttggc aagatacttc tggatttgga aacttgatgc ttacaggtaa 4620 gccatctggt gtccttaaaa aggttgtggc atttaatgac ataaaagaca attgggcgaa 4680 agacgtaata gaagtattag cgtcaaggca catagtagaa gggatgacag acacccagta 4740 tgaaccaaac aagacagtga cgagagcaga atttacagca atgatactga ggctattaaa 4800 cataaaagaa gaagcataca gcggagaatt tagcgatgta aaaagtggag actggtatgc 4860 aaacgcgata gaagcagcat acaaaacagg aataatcgaa ggtgacggaa agaacgcaag 4920 gccaaatgac agcataacaa gagaagagat gacagcaata gccatgaggg catacgagat 4980 gctgacacag tacgaagaag agaatatagg tgcgacaaca tttagcgacg acaaatccat 5040 aagcgattgg gcaagaaatg tagtggcaaa tgcagcgaaa ttaggaatag taaatggtga 5100 gccaaataac gtatttgcac ctaaaggaaa tgccacaaga gcagaagcag cagctatcat 5160 atacggctta ttagaaaaaa caaataagct ttaagtaaaa aggcagagag gaataatctt 5220 ccctctgcct ttttactttg tgataattta gactgttatt tctattgata tgtcgttttt 5280 atctaaattg aaatgaaatt ttctatcatt aatgattaat tcatattcgc ctaaaaagcc 5340 tgtaaattcg aattcacctc tattgcttgt 5370 // |
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