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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   U44432; SV 1; linear; genomic DNA; STD; PRO; 1256 BP.
XX
AC   U44432;
XX
DT   26-JAN-1996 (Rel. 46, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Vibrio cholerae DNA polymerase sigma 32 subunit (rpoH) gene, complete cds,
DE   and dehydrogenase (udhA) gene, partial cds.
XX
KW   .
XX
OS   Vibrio cholerae
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC   Vibrio.
XX
RN   [1]
RP   1-1256
RX   DOI; 10.1016/S0378-1119(96)00849-9
RX   PUBMED; 9168128.
RA   Sahu G.K., Chowdhury R., Das J.;
RT   "The rpoH gene encoding sigma 32 homolog of Vibrio cholerae";
RL   Gene 189(2):203-207(1997).
XX
RN   [2]
RP   1-1256
RA   Das J.;
RT   ;
RL   Submitted (02-JAN-1996) to the EMBL/GenBank/DDBJ databases.
RL   J. Das, Biophysics Division, Indian Institute of Chemical Biology, 4 Raja
RL   S.C. Mullick Road, Calcutta 700 032, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1256
FT                   /organism="Vibrio cholerae"
FT                   /strain="569B"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:666"
FT   RBS             44..48
FT                   /gene="rpoH"
FT   CDS             54..914
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="rpoH"
FT                   /product="DNA polymerase sigma 32 subunit"
FT                   /note="Heat shock sigma factor"
FT                   /db_xref="GOA:P50511"
FT                   /db_xref="HSSP:1KU3"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/Swiss-Prot:P50511"
FT                   /protein_id="AAC45341.1"
FT                   /translation="MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKG
FT                   DIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSF
FT                   AVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGV
FT                   EPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHT
FT                   TQRLSMALASLDDGSQHIVRARWLDDDNKTTLQDLAAKYGVSAERIRQLEKNAMRKLKE
FT                   AVGEF"
FT   terminator      942..969
FT                   /gene="rpoH"
FT   CDS             complement(1116..>1256)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="udhA"
FT                   /product="dehydrogenase"
FT                   /function="unknown"
FT                   /note="similar to E. coli UdhA"
FT                   /db_xref="GOA:P50529"
FT                   /db_xref="HSSP:3LAD"
FT                   /db_xref="InterPro:IPR001327"
FT                   /db_xref="UniProtKB/Swiss-Prot:P50529"
FT                   /protein_id="AAC45342.1"
FT                   /translation="IHIGQAIMEQKGEANTIEYFVNTTFNYPTMAEAFRVAALNGLNRL
FT                   F"
XX
SQ   Sequence 1256 BP; 329 A; 275 C; 330 G; 322 T; 0 other;
     aagcttgttg cggtaaaaca gcgtatccag atcagagaat gatgaggaat tgaatgacta        60
     accaagcgta tccaatggct cttgtttccc aagacagctt agatagctac atccgttcag       120
     taaacggtta cccgatgctg agtgctgatg aagagcgcga gctggcagag cgattacatt       180
     acaaagggga tatcgatgct gcgaaaggct tgatcttgtc gcacctacga tttgttgttc       240
     acgttgctcg tggttattcc ggttatggct tgccaatggc ggacttagtg caagagggca       300
     atatcggtct gatgaaagcg gttaaacgct ttaaccctga gatgggggta agactggtgt       360
     cgtttgcggt gcactggatt aaagccgaaa ttcatgaata tgtgctacgt aactggcgta       420
     ttgtgaaaat cgccaccacc aaagcacagc gcaaactgtt ctttaatctg cgtaaatcga       480
     aaaaacgcct tggctggttt aataacggcg aagtcgaaac ggtagcgcgc gagctgggtg       540
     ttgagcctgc tgaagtgcgt gaaatggaat ctcgtctggc agcccaagat gctgcgtttg       600
     agatgtccgc cgaggatgac gaaaacggca tggcctacac tgcgcctgtg ctgtacctcg       660
     aagataagca ctctgactta gctgataacc tagaagccga aaactgggaa gcgcatacca       720
     cacagcgcct cagcatggcg ctggcaagtc ttgatgacgg tagccaacac attgtgcgtg       780
     ctcgttggtt ggatgatgac aacaaaacca cactgcaaga tttggcggca aagtatggtg       840
     tttctgcgga gcgtattcgt cagcttgaga aaaacgccat gcgtaagctg aaagaagcgg       900
     tgggcgagtt ctgatttcac attgcgtaac agcttgataa gaaaaggtct ggtcaatgcc       960
     agaccttttt tgtctctatc tatataccct tcctacttga agctgcagcg gtgttggcta      1020
     cgttcgttca ccccaatcac atagtgtatc tatgcacatg gggatgaact cacttgccgt      1080
     ctacctgcaa ctctaagtag tttgactcta gcgtattaaa acagtcgatt aagaccattt      1140
     aaggctgcaa cacggaaggc ttcggccatc gtcgggtagt taaaggtggt gttcacgaaa      1200
     tactcaatgg tattggcttc ccctttttgt tccatgatcg cttggccgat atgaat          1256
//
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