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EBI DbfetchID U43917; SV 1; linear; genomic DNA; STD; PRO; 2134 BP. XX AC U43917; XX DT 02-SEP-1996 (Rel. 49, Created) DT 05-JUL-1999 (Rel. 60, Last updated, Version 2) XX DE Helicobacter pylori serine acetyltransferase homolog (cysE) and DE ulcer-associated (iceA) genes, complete cds, and DNA adenine methylase DE homolog (M.HpyI) gene, partial cds. XX KW . XX OS Helicobacter pylori OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Helicobacteraceae; Helicobacter. XX RN [1] RP 1-2134 RA Peek R.M.Jr., Thompson S.A., Atherton J.C., Blaser M.J., Miller G.G.; RT "Expression of a novel ulcer-associated gene, iceA, by H. pylori following RT contact with gastric epithelium"; RL Unpublished. XX RN [2] RP 1-2134 RA Peek R.M.Jr., Thompson S.A., Atherton J.C., Blaser M.J., Miller G.G.; RT ; RL Submitted (22-DEC-1995) to the EMBL/GenBank/DDBJ databases. RL Stuart A. Thompson, Infectious Diseases, Vanderbilt University, MCN A-3310, RL Nashville, TN 37232, USA XX FH Key Location/Qualifiers FH FT source 1..2134 FT /organism="Helicobacter pylori" FT /strain="60190" FT /mol_type="genomic DNA" FT /db_xref="taxon:210" FT gene 5..532 FT /gene="cysE" FT RBS 5..8 FT /gene="cysE" FT CDS 17..532 FT /codon_start=1 FT /transl_table=11 FT /gene="cysE" FT /product="CysE" FT /note="serine acetyltransferase homolog" FT /db_xref="GOA:P71405" FT /db_xref="InterPro:IPR001451" FT /db_xref="InterPro:IPR005881" FT /db_xref="InterPro:IPR011004" FT /db_xref="InterPro:IPR018357" FT /db_xref="UniProtKB/Swiss-Prot:P71405" FT /protein_id="AAB07027.1" FT /translation="MLDLFYSLERVLQEDPAARNKWEVLLLYPGIHALLCYRLAHALHK FT RRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVT FT LGGTGRFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGTK FT AKTITKDR" FT -35_signal 554..559 FT /note="potential" FT -35_signal 573..578 FT /note="potential" FT -10_signal 579..584 FT /note="potential" FT -10_signal 595..600 FT /note="potential" FT -35_signal 644..649 FT /note="potential" FT -10_signal 665..670 FT /note="potential" FT gene 751..1302 FT /gene="iceA" FT RBS 751..754 FT /gene="iceA" FT CDS 766..1302 FT /codon_start=1 FT /transl_table=11 FT /gene="iceA" FT /product="IceA" FT /note="expression induced by contact with gastric FT epithelial cells" FT /db_xref="InterPro:IPR003615" FT /db_xref="InterPro:IPR007979" FT /db_xref="UniProtKB/TrEMBL:P71406" FT /protein_id="AAB07028.1" FT /translation="MAKEFNLEFDKGQTLGNSIDRIRLNGYNTECVFNQSICQDIKNHY FT KQQCCAMCGVRGNSENTQIEVDHKDGRKDDSRVSDLNTQTFDDFQALCKACNDKKRQIC FT KKCKESGYRFDATKIPGNYYSFYEGEAEYDGCVGCYQYDPIQYRKTCNDRIYNEGYQKG FT YGDGYQIGYHQKTTL" FT gene 1302..2134 FT /gene="M.HpyI" FT RBS 1302..1306 FT /gene="M.HpyI" FT CDS 1311..>2134 FT /codon_start=1 FT /transl_table=11 FT /gene="M.HpyI" FT /product="M.HpyI" FT /note="DNA adenine methylase homolog" FT /db_xref="GOA:P71407" FT /db_xref="InterPro:IPR002052" FT /db_xref="InterPro:IPR002294" FT /db_xref="InterPro:IPR012327" FT /db_xref="UniProtKB/TrEMBL:P71407" FT /protein_id="AAB07029.1" FT /translation="MNYIGSKYKLIPFIKENIHAVVGHDLSGAIFCDLFAGTGIVGRAF FT KKAVNKVISNDLEYYSFVLNQNYIGNIQEIPNQEELIDRLNSVALRKGFIHSHYSLGGS FT SRQYFSETNAQKIDAVRLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYGAFL FT KRLKKSAQKELILKGAHFDLSLNANEVYQQDASELIGKISGDILYLDPPYNARQYGANY FT HLLNTIAAYTPFTPKGKTGLPSYQKSSFWSRSQILNAFENLIKKARFKYIFL" XX SQ Sequence 2134 BP; 633 A; 354 C; 517 G; 630 T; 0 other; aaccggagac tctgtcatgc tagatctgtt ttatagcctg gagcgtgtct tgcaagaaga 60 cccggcagct aggaataagt gggaggtgct cttgctttat ccgggcattc atgcgttgct 120 ttgttaccgc ctagcgcatg cgttgcacaa gcggagattt tacttcattg cacgtgcgct 180 ttctcagttg gcgcgtttta tcactgggat agaaatccac ccgggcgcta agattgggag 240 agggcttttt attgatcatg gcatgggtgt ggtgattggc gagaccacag agattggaga 300 tgatgttacc atttatcatg gcgtaactct agggggcacg ggcaggttta agggcaagcg 360 ccaccctact ttaggcaacc gagtggtagt gggggcaggg gctaaggtct tgggtgcgat 420 ttgcgtgggc gatgatgtga agattggggc taatgcggtg gtgctttcag atttacccac 480 aggttctacg gctgtaggca ctaaagctaa aaccatcaca aaggatcgtt aattctagac 540 aagcggttgg agtttgcgcc atgcgggtta ttttgaggta aattgattag aattttttat 600 agagagattt tttaaaatga gtaaaagtaa aaaagaatta tttttggaac tcgcacaacc 660 tgataaaaat ggggtgagtc gttgggtaag cgttacagaa tttttaggaa aataccaagg 720 attacagcta ggtaatgggg gagttggtgc aggaatagct cagctttggc taaagaattt 780 aatttggagt ttgataaagg gcaaactcta ggaaattcta ttgatagaat acgcttgaat 840 ggctataata ccgaatgtgt ttttaaccaa agtatctgtc aagacattaa aaaccactat 900 aagcaacaat gttgcgcgat gtgtggtgtg cgtggcaact ctgaaaacac tcaaatagaa 960 gtggatcata aagacggccg caaggatgat tcaagagttt ctgatttaaa cacacagact 1020 tttgatgatt ttcaggcttt atgcaaagct tgtaacgata agaaacgcca gatttgtaaa 1080 aaatgcaaag aaagtggcta tagatttgac gcaacaaaaa ttcctggcaa ttattattct 1140 ttctatgagg gggaggctga atatgatggt tgtgtgggct gttatcaata tgaccccata 1200 caatacagga aaacttgtaa tgataggata tacaatgaag ggtatcaaaa aggctatggt 1260 gatgggtatc aaattggata ccatcaaaaa actactttat agcggttgca atgaactaca 1320 tcggctctaa atacaagctc attcccttta ttaaagaaaa tatccatgcg gttgtaggcc 1380 atgatctctc tggtgcgatt ttttgtgatc tgttcgctgg gacgggcatt gtggggcgtg 1440 cgtttaaaaa agctgttaat aaggttattt ctaatgattt ggagtattat agctttgttt 1500 tgaatcaaaa ttatattggc aacattcaag aaatccctaa tcaagaagag cttattgata 1560 ggctcaatag cgttgcttta agaaagggtt ttattcattc gcattattct ttggggggga 1620 gttcaaggca gtattttagc gaaacaaacg ctcaaaaaat tgatgcggtg cgtctaaaaa 1680 ttgaagagct taagctttct caaaacattg ataattgcgc gtattatttt ttgctcgcat 1740 cactattaga gagcgcggac aaggtggcta acaccgcttc ggtttatggg gcttttttaa 1800 aacgccttaa aaaaagcgct caaaaagaac tcatcttaaa aggcgctcat tttgatttga 1860 gtttaaacgc taatgaggtg tatcagcaag acgctagcga gttgatcgga aagatttcag 1920 gggatatttt gtatttagac cctccttata atgcgaggca atacggggcg aattaccatt 1980 tattgaacac gatagctgct tatacgccct ttactccaaa aggtaaaacc ggcttgccca 2040 gttatcagaa atcctctttt tggtctcgtt ctcaaatctt aaacgctttt gaaaacttga 2100 tcaaaaaagc gcgattcaaa tatatttttt taag 2134 // |
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