 |
|
EBI DbfetchID U39405; SV 1; linear; genomic DNA; STD; PLN; 2792 BP. XX AC U39405; XX DT 01-JAN-1996 (Rel. 46, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Pinus taeda xylem 4-coumarate:CoA ligase (lp4CL-1) gene, complete cds. XX KW . XX OS Pinus taeda (loblolly pine) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; Pinus. XX RN [1] RP 1-2792 RX DOI; 10.1104/pp.113.1.65 RX PUBMED; 9008388. RA Zhang X.H., Chiang V.L.; RT "Molecular cloning of 4-coumarate:coenzyme A ligase in loblolly pine and RT the roles of this enzyme in the biosynthesis of lignin in compression RT wood"; RL Plant Physiol. 113(1):65-74(1997). XX RN [2] RP 1-2792 RA Zhang X.-H., Chiang V.L.; RT ; RL Submitted (24-OCT-1995) to the EMBL/GenBank/DDBJ databases. RL X.-H. Zhang, Forestry, Michigan Tech University, 1400 Townsend Drive, RL Houghton, MI 49931, USA XX FH Key Location/Qualifiers FH FT source 1..2792 FT /organism="Pinus taeda" FT /mol_type="genomic DNA" FT /tissue_type="needles (leaves)" FT /db_xref="taxon:3352" FT mRNA join(<1..1135,1561..1905,1996..2063,2413..>2792) FT /gene="lp4CL-1" FT 5'UTR <1..142 FT /gene="lp4CL-1" FT exon <1..1135 FT /gene="lp4CL-1" FT CDS join(143..1135,1561..1905,1996..2063,2413..2620) FT /codon_start=1 FT /gene="lp4CL-1" FT /product="4-coumarate:CoA ligase" FT /EC_number="6.2.1.12" FT /db_xref="GOA:P41636" FT /db_xref="InterPro:IPR000873" FT /db_xref="InterPro:IPR020845" FT /db_xref="UniProtKB/Swiss-Prot:P41636" FT /protein_id="AAB42383.1" FT /translation="MANGIKKVEHLYRSKLPDIEISDHLPLHSYCFERVAEFADRPCLI FT DGATDRTYCFSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIV FT TTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHIS FT VLTEADETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLY FT FHSDDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIV FT PPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGP FT VLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGY FT INDPESTAATIDEEGWLHTGDVGYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVA FT HPSIADAAVVPQKHEEAGEVPVAFVVKSSEISEQEIKEFVAKQVIFYKKIHRVYFVDAI FT PKSPSGKILRKDLRSRLAAK" FT intron 1136..1560 FT /gene="lp4CL-1" FT exon 1561..1905 FT /gene="lp4CL-1" FT intron 1906..1995 FT /gene="lp4CL-1" FT exon 1996..2063 FT /gene="lp4CL-1" FT intron 2064..2412 FT /gene="lp4CL-1" FT exon 2413..>2792 FT /gene="lp4CL-1" FT 3'UTR 2621..>2792 FT /gene="lp4CL-1" XX SQ Sequence 2792 BP; 737 A; 643 C; 589 G; 823 T; 0 other; ctcattcaat tcttcccact gcaggctaca tttgtcagac acgttttccg ccatttttcg 60 cctgtttctg cggagaattt gatcaggttc ggattgggat tgaatcaatt gaaaggtttt 120 tattttcagt atttcgatcg ccatggccaa cggaatcaag aaggtcgagc atctgtacag 180 atcgaagctt cccgatatcg agatctccga ccatctgcct cttcattcgt attgctttga 240 gagagtagcg gaattcgcag acagaccctg tctgatcgat ggggcgacag acagaactta 300 ttgcttttca gaggtggaac tgatttctcg caaggtcgct gccggtctgg cgaagctcgg 360 gttgcagcag gggcaggttg tcatgcttct ccttccgaat tgcatcgaat ttgcgtttgt 420 gttcatgggg gcctctgtcc ggggcgccat tgtgaccacg gccaatcctt tctacaagcc 480 gggcgagatc gccaaacagg ccaaggccgc gggcgcgcgc atcatagtta ccctggcagc 540 ttatgttgag aaactggccg atctgcagag ccacgatgtg ctcgtcatca caatcgatga 600 tgctcccaag gaaggttgcc aacatatttc cgttctgacc gaagccgacg aaacccaatg 660 cccggccgtg aaaatccacc cggacgatgt cgtggcgttg ccctattctt ccggaaccac 720 ggggctcccc aagggcgtga tgttaacgca caaaggcctg gtgtccagcg ttgcccagca 780 ggtcgatggt gaaaatccca atctgtattt ccattccgat gacgtgatac tctgtgtctt 840 gcctcttttc cacatctatt ctctcaattc ggttctcctc tgcgcgctca gagccggggc 900 tgcgaccctg attatgcaga aattcaacct cacgacctgt ctggagctga ttcagaaata 960 caaggttacc gttgccccaa ttgtgcctcc aattgtcctg gacatcacaa agagccccat 1020 cgtttcccag tacgatgtct cgtccgtccg gataatcatg tccggcgctg cgcctctcgg 1080 gaaggaactc gaagatgccc tcagagagcg ttttcccaag gccatcttcg ggcaggtcag 1140 taatcttaac ttcccttttg aaaactctta agaatgaaaa tttatcttaa atttagaaac 1200 tttggctgat ctttcgaaaa tctgctaaat tttttaacct ttggcccgat ctttttaaaa 1260 tatcgcgaat tcttatagga acctgcaaat tcttttagca atctacaaat ctttttaaaa 1320 tatataattg aaaatctgct ccctttccgt tcggaaccct gggctcgttc tttttaaaat 1380 atgccaaatt tcttttagga acctgcaaat tcttttagca atctacaaat ctttttaaaa 1440 tatataaatg aaaatggacc aattttctaa cgcctaaatt ttttctagcc cctttgcttt 1500 tccttccaaa taccctacct aattttgcat ctaacagccc caatcgttta acgttttcag 1560 ggctacggca tgacagaagc aggcccggtg ctggcaatga acctagcctt cgcaaagaat 1620 cctttccccg tcaaatctgg ctcctgcgga acagtcgtcc ggaacgctca aataaagatc 1680 ctcgatacag aaactggcga atctctcccg cacaatcaag ccggcgaaat ctgcatccgc 1740 ggacccgaaa taatgaaagg atatattaac gacccggaat ccacggccgc tacaatcgat 1800 gaagaaggct ggcttcacac aggcgacgtc gggtacattg acgatgacga agaaatcttc 1860 atagtcgaca gagtaaagga gattatcaaa tataagggct tccaggtaca cctccattcc 1920 ctctctgcgg taaaactgcc tgtcgcattg tattttcagt cattttccgg gttgtactta 1980 catttgtttg tccaggtggc tcctgctgag ctggaagctt tacttgtggc tcatccgtca 2040 attgctgacg cagcagtcgt tccgtaagtc caccttcagt aatcaatgat gactcataat 2100 atttcagtca gttaaaataa ttaaatattt tgtttggtgg attgcccaaa acaccatgga 2160 actaaagagt tcctcatttt agacattaat agagtacatt ataatttact tagtggtttg 2220 gagtgttaaa tttatttatg tatttaaaaa tttattttat ttaacaaaaa aatttataat 2280 ctcgtttcgt tttctttaaa tttcgttaaa aaattatatt gcgatcattt tctctattaa 2340 aaattttgtt taattaaact aaatttataa cattgtttaa tatgatgttt tatttaattg 2400 ttgtgcttac agtcaaaagc acgaggaggc gggcgaggtt ccggtggcgt tcgtggtgaa 2460 gtcgtcggaa atcagcgagc aggaaatcaa ggagttcgtg gcaaagcagg tgattttcta 2520 caagaaaata cacagagttt actttgtgga tgcgattcct aagtcgccgt ccggcaagat 2580 tctgagaaag gatttgagaa gcagactggc agcaaaatga aaatgaattt ccatatgatt 2640 ctaagattcc tttgccgata attataggat tcctttctgt tcacttctat ttatataata 2700 aagtggtgca gagtaagcgc cctataagga gagagagaga gcttatcaat tgtatcatat 2760 ggattgtcaa cgccctacac tcttgcgatc gc 2792 // |
|