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EBI DbfetchID U39404; SV 1; linear; genomic DNA; STD; PLN; 2828 BP. XX AC U39404; XX DT 01-JAN-1996 (Rel. 46, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Pinus taeda xylem 4-coumarate:CoA ligase (lp4CL-2) gene, complete cds. XX KW . XX OS Pinus taeda (loblolly pine) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; Pinus. XX RN [1] RP 1-2828 RX DOI; 10.1104/pp.113.1.65 RX PUBMED; 9008388. RA Zhang X.H., Chiang V.L.; RT "Molecular cloning of 4-coumarate:coenzyme A ligase in loblolly pine and RT the roles of this enzyme in the biosynthesis of lignin in compression RT wood"; RL Plant Physiol. 113(1):65-74(1997). XX RN [2] RP 1-2828 RA Zhang X.-H., Chiang V.L.; RT ; RL Submitted (24-OCT-1995) to the EMBL/GenBank/DDBJ databases. RL X.-H. Zhang, Forestry, Michigan Tech University, 1400 Townsend Drive, RL Houghton, MI 49931, USA XX FH Key Location/Qualifiers FH FT source 1..2828 FT /organism="Pinus taeda" FT /mol_type="genomic DNA" FT /tissue_type="needles (leaves)" FT /db_xref="taxon:3352" FT 5'UTR <1..142 FT /gene="lp4CL-2" FT exon <1..1135 FT /gene="lp4CL-2" FT mRNA join(<1..1135,1567..1911,2002..2069,2449..>2828) FT /gene="lp4CL-2" FT CDS join(143..1135,1567..1911,2002..2069,2449..2656) FT /codon_start=1 FT /gene="lp4CL-2" FT /product="4-coumarate:CoA ligase" FT /EC_number="6.2.1.12" FT /db_xref="GOA:P41636" FT /db_xref="InterPro:IPR000873" FT /db_xref="InterPro:IPR020845" FT /db_xref="UniProtKB/Swiss-Prot:P41636" FT /protein_id="AAB42382.1" FT /translation="MANGIKKVEHLYRSKLPDIEISDHLPLHSYCFERVAEFADRPCLI FT DGATDRTYCFSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIV FT TTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHIS FT VLTEADETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLY FT FHSDDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIV FT PPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGP FT VLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGY FT INDPESTAATIDEEGWLHTGDVGYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVA FT HPSIADAAVVPQKHEEAGEVPVAFVVKSSEISEQEIKEFVAKQVIFYKKIHRVYFVDAI FT PKSPSGKILRKDLRSRLAAK" FT intron 1136..1566 FT /gene="lp4CL-2" FT exon 1567..1911 FT /gene="lp4CL-2" FT intron 1912..2001 FT /gene="lp4CL-2" FT exon 2002..2069 FT /gene="lp4CL-2" FT intron 2070..2448 FT /gene="lp4CL-2" FT exon 2449..>2828 FT /gene="lp4CL-2" FT 3'UTR 2657..>2828 FT /gene="lp4CL-2" XX SQ Sequence 2828 BP; 754 A; 642 C; 593 G; 839 T; 0 other; ctcattcaat tcttcccact gcaggctaca tttgtcagac acgttttccg ccatttttcg 60 cctgtttctg cggagaattt gatcaggttc ggattgggat tgaatcaatt gaaaggtttt 120 tattttcagt atttcgatcg ccatggccaa cggaatcaag aaggtcgagc atctgtacag 180 atcgaagctt cccgatatcg agatctccga ccatctgcct cttcattcgt attgctttga 240 gagagtagcg gaattcgcag acagaccctg tctgatcgat ggggcgacag acagaactta 300 ttgcttttca gaggtggaac tgatttctcg caaggtcgct gccggtctgg cgaagctcgg 360 gttgcagcag gggcaggttg tcatgcttct ccttccgaat tgcatcgaat ttgcgtttgt 420 gttcatgggg gcctctgtcc ggggcgccat tgtgaccacg gccaatcctt tctacaagcc 480 gggcgagatc gccaaacagg ccaaggccgc gggcgcgcgc atcatagtta ccctggcagc 540 ttatgttgag aaactggccg atctgcagag ccacgatgtg ctcgtcatca caatcgatga 600 tgctcccaag gaaggttgcc aacatatttc cgttctgacc gaagccgacg aaacccaatg 660 cccggccgtg aaaatccacc cggacgatgt cgtggcgttg ccctattctt ccggaaccac 720 ggggctcccc aagggcgtga tgttaacgca caaaggcctg gtgtccagcg ttgcccagca 780 ggtcgatggt gaaaatccca atctgtattt ccattccgat gacgtgatac tctgtgtctt 840 gcctcttttc cacatctatt ctctcaattc ggttctcctc tgcgcgctca gagccggggc 900 tgcgaccctg attatgcaga aattcaacct cacgacctgt ctggagctga ttcagaaata 960 caaggttacc gttgccccaa ttgtgcctcc aattgtcctg gacatcacaa agagccccat 1020 cgtttcccag tacgatgtct cgtccgtccg gataatcatg tccggcgctg cgcctctcgg 1080 gaaggaactc gaagatgccc tcagagagcg ttttcccaag gccatcttcg ggcaggtcag 1140 taatcttaac ttcccttttg aaaactctta agaatgaaaa tttatcttaa atttagaaac 1200 tttggctgat ctttcgaaaa tctgctaaat tttttggaac ctttggcccg atctttttaa 1260 aatatcgccg aattatttta ggcaacctgc aaattctttt agcaatctac aaatcttttt 1320 aaaatatata attgaaaatc tgctaaattt ccgttcggaa cccttgactc gttcttttta 1380 aaatatgcca aatttctttt aggaatcttg caaaattctt ttagcaatct acaaatcttt 1440 ttaaaatata taaatgaaga tggaccaatt tttctagccc ctaaattttt tctagcccct 1500 tcgttttcct tccaattacc ctacctaatt ttgcatctaa cagcccgaat cgtttaactt 1560 tttcagggct acggcatgac agaagcaggc ccggtgctgg caatgaacct agccttcgca 1620 aagaatcctt tccccgtcaa atctggctcc tgcggaacag tcgtccggaa cgctcaaata 1680 aagatcctcg atacagaaac tggcgaatct ctcccgcaca atcaagccgg cgaaatctgc 1740 atccgcggac ccgaaataat gaaaggatat attaacgacc cggaatccac ggccgctaca 1800 atcgatgaag aaggctggct tcacacaggc gacgtcgggt acattgacga tgacgaagaa 1860 atcttcatag tcgacagagt aaaggagatt atcaaatata agggcttcca ggtacacctc 1920 cattccctct ctgcggtaaa actgcctgtc gcattgtatt ttcagtcatt ttccgggttg 1980 tacttacatt tgtttgtcca ggtggctcct gctgagctgg aagctttact tgtggctcat 2040 ccgtcaattg ctgacgcagc agtcgttccg taagtccacc ttcagtaatc aatgatgact 2100 cgataatatt tcagtcagtt aaaataatta aataattttt ttttggtgga ttgcccaaac 2160 accatggaac taaagagttc taatttttag gacattaata gagtacatta taatttactt 2220 agtggtttgg agtgttaaat ttatttatta taatcttgtt tcgttttctt taaattttgt 2280 taaaaaatta tatggcgatc attttctcta ttaaaagtta aaaattttgt tcaaaattat 2340 atcacgatca ctttttctat taattaaact aaatttatat aaaatataaa aaaaattcaa 2400 ttaacattgt tattaatatg atgttttatt taattgttgt gcttacagtc aaaagcacga 2460 ggaggcgggc gaggttccgg tggcgttcgt ggtgaagtcg tcggaaatca gcgagcagga 2520 aatcaaggag ttcgtggcaa agcaggtgat tttctacaag aaaatacaca gagtttactt 2580 tgtggatgcg attcctaagt cgccgtccgg caagattctg agaaaggatt tgagaagcag 2640 actggcagca aaatgaaaat gaatttccat atgattctaa gattcctttg ccgataatta 2700 taggattcct ttctgttcac ttctatttat ataataaagt ggtgcagagt aagcgcccta 2760 taaggagaga gagagagctt atcaattgta tcatatggat tgtcaacgcc ctacactctt 2820 gcgatcgc 2828 // |
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