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EBI DbfetchID U25634; SV 1; linear; genomic DNA; STD; PRO; 7163 BP. XX AC U25634; XX DT 23-MAY-1995 (Rel. 43, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Agrobacterium vitis plasmid pTrAB4 putative LysR-type protein (ttuA), DE putative tartrate transport protein (ttuB), putative tartrate dehydrogenase DE (ttuC), putative hydroxypyruvate reductase (ttuD) and putative pyruvate DE kinase (ttuE) genes, complete cds. XX KW . XX OS Agrobacterium vitis OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; OC Rhizobium/Agrobacterium group; Agrobacterium. OG pTrAB4 (tartrate degradation plasmid of the strain AB4) XX RN [1] RP 1-7163 RA Crouzet P., Otten L.; RT "Sequence and mutational analysis of a tartrate utilization operon from RT Agrobacterium vitis"; RL Unpublished. XX RN [2] RP 1-7163 RA Szegedi E., Otten L., Czako M.; RT "Diverse types of tartrate plasmids in Agrobacterium tumefaciens biotype RT III strains"; RL Mol. Plant Microbe Interact. 5:435-438(1992). XX RN [3] RP 1-7163 RA Crouzet P.; RT ; RL Submitted (24-APR-1995) to the EMBL/GenBank/DDBJ databases. RL Philippe Crouzet, Department of Phytopathology, Plant Molecular Biology RL Institute of the C.N.R.S., Rue du General Zimmer 12, Strasbourg Cedex, RL 67084, France XX FH Key Location/Qualifiers FH FT source 1..7163 FT /organism="Agrobacterium vitis" FT /plasmid="pTrAB4 (tartrate degradation plasmid of the FT strain AB4)" FT /strain="AB4" FT /mol_type="genomic DNA" FT /note="region encoding products that give the ability to FT grow on tartrate as sole carbon source" FT /db_xref="taxon:373" FT CDS complement(405..1319) FT /codon_start=1 FT /transl_table=11 FT /gene="ttuA" FT /note="putative LysR-type regulatory protein; transcribed FT in the absence of tartrate; Method: conceptual translation FT supplied by author." FT /db_xref="GOA:P52669" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/Swiss-Prot:P52669" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAA68696.1" FT /translation="MELEQLKCFVAAAEELHFGRAAQKMGILPASLGRHLRLLEESLGT FT RLMSRTTRSVALTEDGVALLEEVRPLLHRLQTLAEEFRSRKTQQATVLRIGAIDSAAAG FT LIPPLLHDFRERFPGIITQLVEDKSIRLIPKLIAGRLDIVFIRPRDGLNRNLVVRTLTQ FT ETPVIALPVTHPLANRERISVDELREEPLIVPERRSRPHSYDLTMKLFEDAGLHPRIAQ FT TADEKQTIINLVAAGIGSAIVPRWTAKLAVFGVTFVPLMTVGGISLRKLPLAAAWAKAV FT RDPGRDQLLELLDTNIDRYAEQA" FT CDS 1443..2744 FT /codon_start=1 FT /transl_table=11 FT /gene="ttuB" FT /note="putative tartrate transporter; inducible by FT tartrate; Method: conceptual translation supplied by FT author." FT /db_xref="GOA:Q44470" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/Swiss-Prot:Q44470" FT /protein_id="AAA68697.1" FT /translation="MNSDLETRVLRKITLRIVPFIMLLYFVAFLDRVNIGFAALTMNED FT LGFSSTVFGIGAGIFFVGYFLFEVPSNLILNKVGARIWIARVMITWGIVSGLMAFVQGT FT TSFYALRFLLGVAEAGFFPGIILYLSFWFPARRRAAVTAIFMAAAPLSTVLGSPISGAL FT MEMHGFLGLAGWQWMFLIEAAPAVILGVVVLFYLTDRPEKAKWLSEDERNWLVKTMNAE FT QAAKGKASHSILAGLADIRVIALALVYFGTSAGLYTLGIWAPQIIKEFGLSSLQVGFIN FT AVPGIFAVAAMVLWARHSDKTGERTWHVVGACLLAAVGLAFATGATSVFTVLIALTLVN FT IGISCSKPPLWSMPTLFLSGPAAAAGIATINSIGNLGGFVGPSMIGWIKDTTGSFAGGL FT YFVAGLLVVSAIVTLVLSRTAPENGGKVAPVQHR" FT CDS 2766..3860 FT /codon_start=1 FT /transl_table=11 FT /gene="ttuC" FT /note="putative tartrate dehydrogenase; already transcribed FT in the absence of tartrate and induced when trartrate is FT added; Method: conceptual translation supplied by author." FT /db_xref="GOA:Q44471" FT /db_xref="HSSP:1DR8" FT /db_xref="InterPro:IPR011829" FT /db_xref="UniProtKB/Swiss-Prot:Q44471" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAA68698.1" FT /translation="MREYKIAAIPADGIGPEVIAAGLQVLEALEQRSGDFKIHTETFDW FT GSDYYKKHGVMMPADGLDKLKKFDAIFFGAVGAPDVPDHITLWGLRLPICQGFDQYANV FT RPTKILPGITPPLRNCGPGDLDWVIVRENSEGEYSGHGGRAHRGLPEEVGTEVAIFTRV FT GVTRIMRYAFKLAQARPRKLLTVVTKSNAQRHGMVMWDEIAAEVATEFPDVTWDKMLVD FT AMTVRMTLKPETLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIH FT GSAFDITGKGIANPIATFWTAAQMLEHLGERDAAARLMSAVERVTEAGILTPDVGGTAN FT TRQVTEAVCNAIAGSNILKMAAAE" FT CDS 3809..5125 FT /codon_start=1 FT /transl_table=11 FT /gene="ttuD" FT /note="putative hydroxypyruvate reductase; inducible by FT tartrate; Method: conceptual translation supplied by FT author." FT /db_xref="GOA:Q44472" FT /db_xref="HSSP:1O0U" FT /db_xref="InterPro:IPR005346" FT /db_xref="UniProtKB/Swiss-Prot:Q44472" FT /protein_id="AAA68699.1" FT /translation="MQRNRRIEYLEDGRCRMTWNDVSARQVLRRIFDAAVASADPKIAV FT VNNLPERPRGRCVVVGAGKASAAMAAAVDAAWPDVDLSGIVVTRYGHAVPAGRIEILEA FT SHPVPDEMSIKAAEKIFAAVQGLGPDDLVVALISGGGSSLLVSPTGKMTLTDKRAVNQA FT LLASGATISEMNTVRKHLSAIKGGHLARAALPAKLVTLIISDVPGDDPSEIASGPTVAD FT PTTLADAAAIIARYGIDLPESARAVLVQGNETPKAGEVAGEIRLVAAPSIALEAAAAAA FT LDAGLCPLILGDALEGEAREMGRVMAGIALSARDKGLPVAAPAVILSGGESTVSLGAMT FT EGRGGRNTEFLLSLAVALKGASGIWAIAGDTDGIDGVEDAAGALVAPDSLIRMRDAGID FT PRATLSAHDSYTAFKAIGDLVVTGPTLTNVNDIRAILIG" FT CDS 5134..6582 FT /codon_start=1 FT /transl_table=11 FT /gene="ttuE" FT /note="putative pyruvate kinase; inducible by tartrate; FT Method: conceptual translation supplied by author." FT /db_xref="GOA:Q44473" FT /db_xref="HSSP:1E0T" FT /db_xref="InterPro:IPR015793" FT /db_xref="UniProtKB/Swiss-Prot:Q44473" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAA68700.1" FT /translation="MFIRNNRRSKIVATVGPASSSPDMLRSLFLAGVDTFRLNFSHGAR FT ADHAEVYRNIRALEQEHDAAIAVLQDLQGPKIRIGVLAHGRLDLARGSTIGFILGREGG FT EGMNDIPLPHREIFEVAVPGMDLLIDDGRIKVRIMEVMDGRLVCEVLNGGALSNRKGVN FT VPGAVLDISPLTAKDREDLEFGLELGVDWVALSFVQRARDMIEARSLVGDRAGLIAKIE FT KPSALDDIEDIVRLSDSVMVARGDLGVEIPPEDVPGKQKEIIRACRLAAKPVIVATQML FT DSMVSSPTPTRAEASDVAGAIYDGADAVMLSAETATGAYPVEAVEIMNRIIEKTEKHKH FT YRPILEATEPDVAQSPPHAVATAAANVAVALGSPVVVAYTSSGTTAARISRARPALPIL FT ALTPSEQVARRLNMFWGVVGVRSQDVHTYEASLIHAQQAVQEAKLASPSDHIVIVAGFP FT FAQQGSTNNLRVVQIAATDNLEIA" XX SQ Sequence 7163 BP; 1386 A; 2081 C; 2160 G; 1536 T; 0 other; gtcgacgaag gaaagggatc tgtatccctt gataacaata cggctcaaat gcattcggca 60 cctttggctc aaaagaatat acaaccgcta ctattgccga ttcggtggtt gtcttcatca 120 tcggttgcgt ctttcttgct aaaaaaatat atggagcggc caacctcgaa ttggttccgt 180 gccgccgctt cctctcaagc accacctgcg cgactctggt tgctgaaaga acgaaattgg 240 taaaccggcg ggcgccgtga agcaaaaagg ttttatattt cagtatcata aaaactgaca 300 ccaccggatc tcggttcgat tcccatcaag agcgaagagg aaccagatgt tggcgtccgc 360 ctctctatcg ggtgcagaca gatggaatga agaggcgggc gagcctacgc ctgctcggca 420 tatcggtcga tgtttgtgtc gagaagttcc agcaactggt cgcgtccggg atcacgaaca 480 gcttttgccc aggctgcggc aagaggcagt ttccggagtg aaatgccgcc aaccgtcatg 540 aggggaacga aagtcacccc gaataccgcg agtttcgcgg tccagcgggg gacgatggcg 600 gatccgattc ctgccgcaac gaggttgata atcgtttgtt tctcgtcagc agtctgagcg 660 atgcgcgggt gtagtccggc gtcctcgaag agtttcatgg tcaggtcata gctgtgggga 720 cgagagcgac gctctggcac gatgaggggc tcctcgcgca gttcatcgac ggagatccgc 780 tcgcggttcg cgagcggatg cgtgacaggc agtgcaataa cgggtgtttc ctgcgtcagg 840 gtgcgaacga ccaggttccg gttcagtccg tctcgaggtc gaataaagac gatatccaga 900 cgcccggcaa tcagttttgg aatgagacgt atcgacttgt cttcgacaag ttgcgtgatg 960 atcccgggga atcgctcccg aaaatcatgc agcagcggcg gtataagacc tgctgcagcg 1020 ctgtctatcg cacctatgcg gagcacggtc gcctgctgcg ttttccttga tcgaaactct 1080 tccgcaagtg tctggagacg atgaagaagg ggcctcacct cctctagcag ggcgactcca 1140 tcttcggtca aggcgacact tcgggttgtc cgggacatga ggcgagtgcc gagggactcc 1200 tccagcagtc ttaaatgccg tcccagcgat gccggtaata ttcccatttt ctgcgcagcc 1260 ctaccgaaat gcagttcttc ggccgcagcg acgaagcatt ttaattgttc cagttccatg 1320 acatgccttt ataacatcta attatataat taaagcattg tcgcttggga ggaaagtaag 1380 aattaacgtc tttcctgaag gcgcaggagg tgcgcccaac ggatcattgg gaggagttcg 1440 ctatgaacag cgacctggag acgcgcgttc tgcgcaaaat cactctgcgc atcgtgccat 1500 ttatcatgct gctttatttt gtagcgttcc tggaccgggt gaatatcggt ttcgccgcac 1560 tgaccatgaa cgaggacctt ggattttcct cgactgtctt cggtatcgga gcaggcatct 1620 tcttcgtcgg ctacttcctg ttcgaagttc cgtccaacct cattctcaac aaagtcggtg 1680 cgcgcatctg gattgcccgc gtcatgatca cctgggggat cgtgtccggc ctcatggcgt 1740 tcgtacaggg aacaacaagt ttctatgcgt tacgcttcct tctcggcgtt gccgaggcgg 1800 gctttttccc ggggattatc ctttacctga gcttctggtt tccggctcgc cgacgtgcgg 1860 cagtgacagc gattttcatg gccgcagccc cgctttcgac cgtcctcggt tcgccgatct 1920 ccggagcgct catggagatg catggtttcc tcggtcttgc cggctggcag tggatgttcc 1980 tgattgaagc cgctcctgcg gtcatcctcg gcgtcgtcgt cctcttttac ctcaccgacc 2040 gtccggaaaa agccaagtgg ctctcggaag atgagcgcaa ctggcttgtg aagacgatga 2100 acgctgagca ggccgcaaag ggcaaggcca gccacagcat tcttgcaggg ctcgctgaca 2160 ttcgggttat cgcgctcgcc cttgtctatt tcggtacgtc cgccggcctt tacaccctcg 2220 gcatctgggc gccgcagatc atcaaggagt tcggcctatc gtcccttcag gtcggcttca 2280 tcaacgcagt accgggcatt ttcgcagttg ctgcaatggt tctctgggcg cgtcattccg 2340 acaagaccgg tgaacggacc tggcatgtcg tcggcgcttg tctgcttgcc gccgtcgggc 2400 ttgcatttgc cacgggtgcg acaagcgtct tcaccgtcct tattgcgctg acgctggtta 2460 acatcgggat tagctgctcg aagccgccgc tttggagcat gcccacgctc ttcctgtcag 2520 gaccagcggc cgcagccggt atcgctacca tcaactcgat cggcaacctg ggcggcttcg 2580 tcggcccctc gatgatcggc tggatcaagg acactacggg cagctttgcg ggcgggctct 2640 acttcgtcgc cggtctgctg gtcgtatccg ctatcgtgac gctcgtgttg tcgcgtaccg 2700 caccggaaaa cgggggcaaa gtcgccccgg tccaacatcg ttaaatctca aagtggagaa 2760 aagacatgcg tgaatacaag attgcagcga tccctgcgga tgggattggt cctgaggtta 2820 tagctgcggg tcttcaggtt ttggaggcgc tggaacagcg cagcggtgac ttcaagatcc 2880 ataccgaaac cttcgactgg ggttcggact attacaagaa gcacggcgtg atgatgccgg 2940 ccgacgggtt ggacaagctg aagaagttcg atgcaatctt cttcggtgcg gtcggcgccc 3000 ctgacgttcc cgaccatatc acgctctggg gcctgcgcct gccgatctgc caggggttcg 3060 accaatacgc caatgtgcgc ccgacgaaga tcctgcccgg catcacgcca cccttgcgca 3120 attgcggtcc aggcgatctc gactgggtca tcgtgcggga gaattccgaa ggcgagtatt 3180 ccggccatgg cggccgcgcc cataggggcc ttccggaaga ggtcggcacg gaagtggcga 3240 tcttcacccg cgtcggcgtg acccgcatta tgcgctacgc cttcaagctg gcccaggcgc 3300 gcccgcgcaa actgctgact gtcgtcacca agtcgaacgc ccagcgccat ggcatggtga 3360 tgtgggacga gatcgcggcc gaagtggcga cggagttccc ggatgtcacc tgggacaaga 3420 tgctggtcga tgcgatgacg gtgcgcatga cgctgaagcc ggagacgttg gatacgatcg 3480 tggcgaccaa tctgcatgcc gacatcctgt cggatctggc tggtgctctc gctggcagcc 3540 tcggggttgc gccgacggcc aacatcgacc cggagcgccg tttcccatca atgtttgagc 3600 cgatccacgg atctgccttc gacattaccg gcaagggtat cgccaacccg atcgccactt 3660 tctggactgc cgcgcagatg ctcgagcatc tcggtgaacg cgacgccgcc gcacggctga 3720 tgagcgccgt cgagcgcgtg accgaagcgg gcatcctgac ccccgatgtc ggcggcaccg 3780 ccaacacccg ccaagtcacc gaagccgtat gcaacgcaat cgcaggatcg aatatcttga 3840 agatggccgc tgcagaatga cctggaacga tgtgtccgct cgccaggtgc tgcgtcgaat 3900 tttcgacgca gccgttgcca gcgcggatcc gaaaatagct gttgtcaaca acctcccaga 3960 gcgtcccaga ggtcgctgcg ttgtggtggg agcgggcaag gcgtcggctg cgatggcggc 4020 tgcggtcgac gccgcctggc ccgatgtcga tctctcgggc atcgtggtca ctcgctacgg 4080 ccacgccgtt ccggcgggac gcatcgaaat cctggaggcc tcccaccccg tcccggatga 4140 gatgagcatc aaggctgcag agaagatttt cgctgcggtt cagggccttg gtccggacga 4200 tctcgtggtg gctctcatct ccggcggcgg ttcgtcattg cttgtatcgc ctacgggcaa 4260 gatgactttg accgacaaaa gggcggtcaa tcaggcgctg cttgccagcg gtgccaccat 4320 ctccgagatg aataccgtcc gcaagcatct ttccgctatc aagggaggcc atctggcccg 4380 cgcagcactg ccggcaaaac tggtgacact gatcatctcc gacgtgccgg gtgatgatcc 4440 atcggagatc gcctcgggtc caacggtcgc ggatcctacc actttggcag acgcagcagc 4500 catcatcgcc cgctacggaa ttgacctgcc cgagtctgcg cgcgcagtgc ttgtgcaagg 4560 caacgagacg cctaaggcag gggaggtcgc aggcgagatt cggctggttg ctgccccctc 4620 gatagcgctc gaagcggccg ccgcggccgc gctagatgcc ggtttgtgtc cacttatcct 4680 cggagatgcc ctggaaggtg aggctcgcga aatggggcgt gtcatggcag gcatcgcact 4740 ctccgcccgc gacaagggcc tgcctgtagc agcacctgcc gtcatcctgt ccggtggtga 4800 gagtaccgtt tcccttggtg ccatgaccga ggggcgcggt gggagaaaca cggagtttct 4860 tctcagtctt gcggttgccc ttaagggagc ttccggcatc tgggccatcg ccggtgatac 4920 tgatggtatc gacggtgtcg aggatgctgc cggtgcgctg gtcgcgccgg acagtcttat 4980 ccgaatgcgc gatgctggta tcgatccacg ggcgaccttg tctgcccatg atagttacac 5040 ggccttcaag gccatcggcg acctggtggt cacaggccca acgcttacga acgtcaacga 5100 catccgcgca attctcatag gttaggtttg gacatgttca tacgcaacaa ccggcgatca 5160 aagatcgtcg cgacggtcgg accggcgtca agttcgcccg acatgcttcg ctcactgttt 5220 ctcgccggtg tcgatacgtt ccgcctgaat ttcagccatg gtgcccgggc cgatcacgcg 5280 gaagtctata ggaacatccg ggctctcgag caggagcatg atgctgctat cgccgtgctg 5340 caggatcttc agggtccgaa gatccggatc ggagttctgg cacatggcag gctcgatctc 5400 gcacgtggat ccaccatcgg atttatcctt ggccgtgagg gtggtgaagg aatgaacgat 5460 attccgctac ctcatcggga aatcttcgag gtggcggtgc ccggaatgga cctcctgatc 5520 gacgacggta gaataaaagt ccggatcatg gaggtgatgg acgggcggct tgtttgcgag 5580 gtcctcaatg gaggcgcctt gtcgaaccgc aagggtgtca acgtgcccgg cgctgtcctg 5640 gacatttccc cgctcacggc gaaagatcgt gaggacctgg aattcgggct cgagcttggc 5700 gtcgactggg tcgcactttc tttcgttcag cgggcacgcg acatgatcga agcccggtcc 5760 ctcgttggag acagggctgg cctcattgcc aagatcgaga agccgtctgc cctcgatgac 5820 atcgaggata ttgtcaggct ttcggacagc gtcatggttg cgcgaggtga tctcggcgtg 5880 gagatcccgc cggaggacgt tccgggcaag cagaaggaaa tcatccgtgc atgccggcta 5940 gcggccaagc ccgtgattgt cgccacacag atgctcgact cgatggtgag ttcgccaacg 6000 ccgacgcgcg ctgaagcttc ggacgttgcc ggtgccatct atgatggggc agatgccgtc 6060 atgctttccg ccgagaccgc aacaggcgcc tacccggtgg aggcggtcga aattatgaac 6120 cggatcatcg agaagacgga gaagcacaag cactaccggc cgatccttga ggcaacggaa 6180 cccgatgtcg ctcaatcacc gccgcatgca gttgccactg cagcagccaa cgttgccgtg 6240 gctctgggat cgccggttgt ggtggcctat acatcgagcg gaacaaccgc ggccagaatt 6300 tcgcgtgcca gaccggcatt gccaattctg gctctcactc cgtccgaaca agtcgcgcgc 6360 cggctcaaca tgttctgggg ggttgtcggc gtgcgatcac aagatgtcca cacctatgag 6420 gcgtcgctga ttcatgcgca acaggcggtg caggaagcaa agctggcaag tccctccgat 6480 cacattgtca tcgtggcggg atttccattt gcgcaacagg gcagcaccaa caatctccgc 6540 gtcgttcaga tcgccgcaac cgacaaccta gagattgcgt agattgtatc gagcaataag 6600 ggggatcaat gcgtcatgag catgtttgcg gtgcagccgt gcggcgcggc tcgccgcatc 6660 cccatcaccc tgctcgattg cttctatgat ttccgcatgc tcaccggccg agtgcagcgg 6720 caagggccgt aggttgaggg tgaacatgcg ggcgcgatgc aattgatcgg cgacggtccc 6780 cgccatccgc atgaggcggc tgtttccgct ctctattacg agagtctgat gaaaatcctc 6840 gtcggccaca gcccatcgtg gaaggtcgtt gtcggccaat gcctcaatca tccgctttgt 6900 ggcggccttc agaagctgga tgacgggcgc gcgttccacc atcggcagcc gggcgagccg 6960 tgccgccgcg gcaccctcga gcgcggtgat gacttcgtag atttcttcga tgtccgcggg 7020 agacagggcg cagatgatga tgcccttctt gggaagtatc cggaccagtc cgtcttcctg 7080 cagtcgcgcc atggcttcgt gcaccggggt tcggctcatg ccgagctgac gcgcgcaatt 7140 tcaatttctg cggcttggta ccc 7163 // |
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