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EBI DbfetchID U24571; SV 1; linear; genomic DNA; STD; PRO; 3664 BP. XX AC U24571; XX DT 03-OCT-1995 (Rel. 45, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Vibrio cholerae otnB and rfbQRS genes, complete cds, and putative DE GDP-D-mannose dehydratase (rfbD) gene, partial cds. XX KW . XX OS Vibrio cholerae OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; OC Vibrio. XX RN [1] RP 1-3664 RA Dumontier S.E., Escuyer V.E., Berche P.; RT "The QRS region from Vibrio cholerae MO45"; RL Unpublished. XX RN [2] RP 1-3664 RA Dumontier S.E.; RT ; RL Submitted (10-APR-1995) to the EMBL/GenBank/DDBJ databases. RL Sandrine E. Dumontier, INSERM U411, Faculte de Medecine Necker-Enfants RL Malades, 156 rue de Vaugirard, Paris, 75015, France XX FH Key Location/Qualifiers FH FT source 1..3664 FT /organism="Vibrio cholerae" FT /strain="MO45" FT /mol_type="genomic DNA" FT /db_xref="taxon:666" FT CDS 143..1150 FT /codon_start=1 FT /transl_table=11 FT /gene="otnB" FT /note="similar to a family of proteins found in E. coli, FT Salmonella, Shigella and Yersinia, involved in the FT regulation of the O antigen chain length" FT /db_xref="GOA:Q57322" FT /db_xref="InterPro:IPR003856" FT /db_xref="UniProtKB/TrEMBL:Q57322" FT /protein_id="AAA77030.1" FT /translation="MQEQKLTPPNYLTYPAQPTAIGDDEIDLRELFRALWKGKWTIIAI FT TLVFAIGSVIFAIMQPNIYKAEALIAPASEQQGGGLSALASQFGGLASLAGVNLGGKGG FT VDKTQMAIEVLKSRQFTSEFIQQHNILADIMAAKKWDNSADQLIYDPALYNAQTHTWVR FT EAKAPFKPEPSMQEAYKVFSKLVTVNKAKDSGMVTIAVEHLSPTVAQQWVTWLIEDINK FT VMKERDVAEAHRSTAFLNEQIALTNVADIRTVLYKLIEEQAKTIMFAEVRDEYVFKTID FT PALAPEEKAKPKRALICVLGTLLGGMLGVAIVLVRFAFRKAGKNHEHADVRETA" FT CDS 1308..2435 FT /codon_start=1 FT /transl_table=11 FT /gene="rfbQRS" FT /product="RfbQRS protein" FT /note="similar to RfbR, RfbQ and RfbS proteins from Vibrio FT cholerae O1, PIR Accession Numbers S28482, S28483 and FT S28481, and H repeat-associated protein in E. coli RHS, FT Swiss-Prot Accession Number P28912" FT /db_xref="GOA:Q57520" FT /db_xref="InterPro:IPR002559" FT /db_xref="UniProtKB/TrEMBL:Q57520" FT /protein_id="AAA77031.1" FT /translation="MSELINPFMHFQIIKDYRQESKVEHKLSDIILLTICGVLSCHDGW FT DGIIDFGNARLDFLKRYGHFEAGIPSADTLSRVMGMINPVALQRSFIAWMKNCHTLTDG FT EVIAIDGKTLRGSYDRSKGKGTIHMVNAFATANGMSIGQLKVDSKSNEITAIPKLLDLL FT DVKGCLITIDAMGCQKKIAQKIRDKEADYLLAVKGNQGMLEQAFDDYFRMDMLQDFDGS FT SYSTQEKSHGRIETRVALVNRDLSVLGDIEHEWPGLKSMGIVASIRQESAVATEQDVSI FT RYYICSKELEAQTLLEATRSHWGVEVMHWSLDTAFCEDNSRIRADDRAEAFARIRQICL FT NLLKSETTFKGGIKRKRMNCAMDEKYLSKVLESLT" FT CDS 2619..>3664 FT /codon_start=1 FT /transl_table=11 FT /note="rfbD-like gene; putative GDP-D-mannose dehydratase; FT similar to the GDP-D-mannose dehydratase from E. coli, FT Swiss-Prot Accession Number P32054, and the RfbD protein FT from Vibrio cholerae O1, PIR Accession Number S28470" FT /db_xref="GOA:Q56598" FT /db_xref="HSSP:1DB3" FT /db_xref="InterPro:IPR006368" FT /db_xref="UniProtKB/Swiss-Prot:Q56598" FT /protein_id="AAA77032.1" FT /translation="MKKKALITGVTGQDGSYLAEFLLAKGYEVHGIKRRASSFNTQRVD FT HIYQDPHVDNASFILHYGDLTDSSNLTRILQEVKPDEVYNLGAQSHVAVSFESPEYTAD FT VDAMGTLRLLEAIRLLGLEKTTKFYQASTSELYGLVQETPQKETTPFYPRSPYAVAKMY FT AYWIVVNYRESYGMYACNGILFNHESPRRGETFVTRKITRGLANIAQGLEKCLYMGNMD FT ALRDWGHAKDYVRMQWMMLQQDQPEDFVIATGVQYSVRQFIEWSAKELGVTLTFEGQGV FT DEKGIVTAIEGDKAPALKVGDVVVQIDPRYFRPAEVETLLGDPSKAKQKLGWTPEITVQ FT EMCAEMVM" XX SQ Sequence 3664 BP; 1060 A; 719 C; 904 G; 981 T; 0 other; tgtatcaaac gggtgtcgca attaatgcct tgaaatgatc tagagcctag aatcgaaaac 60 ctagaaccca ttttaccgat cctattcctt ggtccttgct ttaccaatga ccaaggacca 120 aggacctagg acctaaaaac caatgcaaga acagaaacta acaccaccta attacttaac 180 ttatccagct caacccaccg caattggcga tgatgaaatc gacttacgcg agctgtttcg 240 cgcgctgtgg aaaggcaagt ggaccattat tgcgataacg ttagtgtttg cgataggctc 300 ggtgattttt gccattatgc agcctaatat ttacaaagca gaagctttga ttgctcctgc 360 ctcggaacaa caaggtggcg gcttaagtgc tttagcttca cagtttggcg gcttagcgag 420 cttggccggg gtcaatctag gcggtaaagg tggggtagat aaaacgcaaa tggcgattga 480 agtgctaaaa tcgcgccaat ttaccagtga gtttatccag caacacaata ttctggccga 540 tataatggct gctaaaaaat gggacaatag tgctgatcag ctcatttatg atccagccct 600 ttataacgcg caaacccaca cttgggtgcg tgaagccaaa gcgccattta aacctgaacc 660 ttcgatgcaa gaagcgtata aagtgtttag caagctggtg acggtcaaca aagctaaaga 720 tagtggaatg gtgacgattg cggttgagca tttatcgccc accgttgccc aacagtgggt 780 tacatggctc attgaagaca tcaataaagt aatgaaagag cgcgatgttg ctgaagcgca 840 ccgcagtacc gcgtttttaa atgaacaaat tgccttaacc aatgtggccg atattcgcac 900 tgttttgtat aaacttattg aagagcaagc caaaaccatc atgtttgctg aagtacgtga 960 cgaatatgtg tttaaaacta tcgaccctgc cttagccccc gaagaaaaag ccaaacccaa 1020 acgtgcctta atttgtgtgc tcggcacctt gctcggcggc atgctgggtg ttgccattgt 1080 gttggtcagg tttgcgttta gaaaagcagg gaaaaatcat gaacatgccg atgtcaggga 1140 aaccgcatga aggtcgtcga tatataaggg ctgcggtgtt gcttagaatt agttaccaat 1200 gcttccttaa tctcagtttt ttgatgtaac ccgatgaaat ttaagatcac cttgtagatc 1260 atttcagttg ttttgtaata gctcctagac aatataggag cctaaatatg agcgagttaa 1320 tcaacccatt tatgcatttc caaatcatta aagactatcg acaagaaagc aaagtagaac 1380 acaaattatc agacattatt ttgctgacaa tttgtggtgt tttgtcgtgt cacgatggct 1440 gggatggcat tatcgatttt ggtaatgctc gcttagattt ccttaaacga tatggtcact 1500 ttgaagctgg aattccttct gcggatacgc tgtctcgcgt gatgggtatg attaatcctg 1560 tcgctttgca aagaagcttc attgcctgga tgaagaactg ccatacactg acggatggtg 1620 aagtgattgc catcgacggt aaaacattac gcggctctta cgaccgctcg aaaggcaaag 1680 gaacgatcca tatggtgaac gcttttgcta cagcaaatgg aatgagcatt gggcaactga 1740 aggttgattc taagagtaac gagattaccg cgatccccaa gctacttgac ttgctagatg 1800 taaaaggctg cttgattacg attgatgcca tgggctgcca aaagaaaata gcgcagaaaa 1860 tccgtgataa agaagcggat tatttattgg cggtcaaagg caatcaggga atgcttgagc 1920 aagcctttga tgattatttt cgaatggaca tgcttcaaga cttcgacggt agttcttata 1980 gtactcaaga aaaaagtcac ggaagaatag aaacgagagt ggctttagtg aatcgcgatt 2040 tgtcggtttt gggtgatatt gaacatgaat ggcctgggct taaatcaatg ggcatcgtgg 2100 cttcaattcg acaagaatcg gcagtagcaa cagagcaaga tgtgagtatt cgttactaca 2160 tatgctctaa agaattggaa gctcaaacgt tacttgaagc gacacgttct cactggggtg 2220 tagaggtcat gcattggtca cttgatactg cattttgtga ggacaattcg cgtattagag 2280 cggacgatcg agcagaggct tttgcaagga tcaggcagat atgtttgaac ctattaaaga 2340 gcgaaaccac gtttaaaggt ggtatcaaac gtaaacggat gaactgcgca atggacgaaa 2400 agtacctaag taaggttctt gaaagcctta cgtgacggta atgttcatgc ggtttccgtg 2460 acgtgacggt aatgttcatg cggtttccgt gtttccgtgg atgttatccg gcgttgaata 2520 aaaagacgag aaacgcgacg cttgatttga aaataaaagt gacgtttaac tgaattgcta 2580 attgaattga aatatcaaat taaaatggaa tcgaaataat gaagaaaaaa gcccttatca 2640 ctggtgtaac tggtcaagac ggttcttatt tagccgagtt tttgttagca aaaggctacg 2700 aagtgcatgg tattaaacgt cgtgcgtctt cttttaacac tcagcgtgtg gatcacatct 2760 atcaagatcc gcatgtggat aatgcgagtt ttattcttca ttatggtgat ttgactgact 2820 cttctaattt gacgcgtatt ttgcaggaag tgaaaccaga tgaagtgtac aacctaggcg 2880 ctcagtctca tgtggctgtg tcgtttgaat ctcctgaata cacagcggat gtggatgcca 2940 tgggcacact gcgtttgttg gaagcgattc gtttgctagg attggagaag acgaccaagt 3000 tttatcaagc gtcgacgtct gagctttacg gtcttgtgca agaaacccca caaaaagaaa 3060 ccacgccatt ttatcctcgc tccccttatg cggtggcgaa aatgtacgct tactggatcg 3120 tggtgaatta ccgtgaatcc tatggcatgt acgcgtgcaa cggtattttg tttaaccatg 3180 aatcgccacg tcgtggtgag acctttgtga ctcgtaagat tacccgtggt ttagcgaaca 3240 tcgcccaggg tttagagaag tgcttgtaca tgggcaacat ggatgcgcta cgtgactggg 3300 gccatgccaa agactatgtt cgtatgcagt ggatgatgtt gcaacaagat caacctgaag 3360 actttgttat cgcaacgggt gtgcaatatt ccgtgcgtca gtttattgaa tggtctgcaa 3420 aagagttggg tgtgacctta acattcgaag gccaaggcgt ggatgaaaaa gggattgtta 3480 cggcaatcga aggcgataaa gcgccagccc tgaaagtcgg tgatgtggta gtacagatcg 3540 acccacgtta tttccgccct gcggaagtgg aaaccttgtt aggtgatcca agcaaagcga 3600 aacagaagct aggctggaca ccagaaatca cagtacaaga aatgtgcgct gagatggtga 3660 tgga 3664 // |
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