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EBI DbfetchID U23145; SV 1; linear; genomic DNA; STD; PRO; 5960 BP. XX AC U23145; XX DT 14-APR-1995 (Rel. 43, Created) DT 11-SEP-2007 (Rel. 93, Last updated, Version 7) XX DE Rhodobacter capsulatus fructose-1,6-/sedoheptulose-1,7-bisphosphate DE aldolase (cbbA) gene, partial cds; and Form II ribulose-1,5-bisphosphate DE carboxylase/oxygenase (cbbM), pentose-5-phosphate-3-epimerase (cbbE), DE hypothetical protein, phosphoglycolate phosphatase (cbbZ), CbbY (cbbY), and DE hypothetical proteins genes, complete cds. XX KW . XX OS Rhodobacter capsulatus OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; OC Rhodobacteraceae; Rhodobacter. XX RN [1] RP 1-5960 RA Larimer F.W., Lu T.-Y.S., Buley D.M.; RT "Sequence and expression of the Form II ribulose-bisphosphate RT carboxylase/oxygenase (Rubisco) gene from Rhodobacter capsulatus"; RL FASEB J. 9:A1275-A1275(1997). XX RN [2] RP 1786-5960 RA Larimer F.W.; RT "Sequence and expression of the pentose-5-phosphate 3-epimerase (cbbE) RT Calvin cycle operon of Rhodobacter capsulatus"; RL Unpublished. XX RN [3] RP 1-5960 RA Larimer F.W.; RT ; RL Submitted (21-MAR-1995) to the EMBL/GenBank/DDBJ databases. RL Frank W. Larimer, Biology Division, Oak Ridge National Laboratory, P.O. Box RL 2009, Oak Ridge, TN 37831-8080, USA XX CC On Oct 27, 1997 this sequence version replaced gi:727416. XX FH Key Location/Qualifiers FH FT source 1..5960 FT /organism="Rhodobacter capsulatus" FT /strain="C.B. van Niel ATH 2.3.1; ATCC catalog #11166" FT /mol_type="genomic DNA" FT /db_xref="taxon:1061" FT gene <1..345 FT /gene="cbbA" FT CDS <1..345 FT /codon_start=1 FT /transl_table=11 FT /gene="cbbA" FT /product="fructose-1,6-/sedoheptulose-1,7-bisphosphate FT aldolase" FT /function="component of pentose-phosphate cycle" FT /EC_number="4.1.2.13" FT /note="aldolase; fbaB; cfxB" FT /db_xref="GOA:P50923" FT /db_xref="InterPro:IPR000771" FT /db_xref="UniProtKB/Swiss-Prot:P50923" FT /protein_id="AAB82047.1" FT /translation="LQDIINEFGGAMPQTFGVPVEEIVRGIKMGVRKVNIDTDCRMRMT FT GQFRRIAEQNKAEFDPRKFLKPAMDAMRDLCKARLEAFGTAGHASKIKVIPMDDMAKRY FT ASGSLAPKTN" FT gene 351..1740 FT /gene="cbbM" FT RBS 351..354 FT /gene="cbbM" FT CDS 364..1740 FT /codon_start=1 FT /transl_table=11 FT /gene="cbbM" FT /product="Form II ribulose-1,5-bisphosphate FT carboxylase/oxygenase" FT /function="carbon dioxide fixation" FT /EC_number="4.1.1.39" FT /note="rbpL" FT /db_xref="GOA:P50922" FT /db_xref="HSSP:2RUS" FT /db_xref="InterPro:IPR017444" FT /db_xref="UniProtKB/Swiss-Prot:P50922" FT /protein_id="AAB82048.1" FT /translation="MDQSNRYARLDLKEADLIAGGRHVLCAYIMKPKAGYGYLETAAHF FT AAESSTGTNVEVSTTDDFTRGVDALVYEIDPEKEIMKIAYPVELFDRNIIDGGAMLCSF FT LTLTIGNNQGMGDVEYAKMHDFYVPPCYLRLFDGPSMNIADMWRVLGRPVVDGGMVVGT FT IIKPKLGLRPKPFADACYEFWLGGDFIKNDEPQGNQTFAPLKETIRLVADAMKRAQDET FT GEAKLFSANITADDHYEMVARGEYILETFGENADHVAFLVDGYVTGPAAITTARRSFPR FT QFLHYHRAGHGAVTSPQSMRGYTAFVLSKMSRLQGASGIHTGTMGYGKMEGDASDKIMA FT YMLNDEAAQGPFYHQDWLGMKATTPIISGGMNALRLPGFFDNLGHSNVIQTSGGGAFGH FT LDGATAGAKSLRQSCDAWKAGVDLVTYAKSHRELARAFESFPNDADKLYPGWRVALGVN FT " FT repeat_region 1755..1776 FT /rpt_type=INVERTED FT gene 1786..2483 FT /gene="cbbE" FT RBS 1786..1790 FT /gene="cbbE" FT CDS 1797..2483 FT /codon_start=1 FT /transl_table=11 FT /gene="cbbE" FT /product="pentose-5-phosphate-3-epimerase" FT /EC_number="5.1.3.1" FT /note="ribulose-phosphate epimerase; cfxE" FT /db_xref="GOA:P51012" FT /db_xref="HSSP:1RPX" FT /db_xref="InterPro:IPR000056" FT /db_xref="UniProtKB/Swiss-Prot:P51012" FT /protein_id="AAB82049.1" FT /translation="MTFDRSIKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHF FT VPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGPHIHRT FT LQAIRAAGMKSGVAINPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKYIDMTAKVRKLR FT AMIGDRPVHIEIDGGMDPVTAPLMAAAGADVFVAGSGVFKGGSVSTPEVYGKNIAAIRA FT AAQAAL" FT CDS 2492..3043 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="similar to A. brasilense flcA gene, encoded by FT GenBank Accession Number Y12363, Synechocystis sp. FT ORF_ID:sll1289, encoded by GenBank Accession Number D90904, FT M. tuberculosis MTCY04C12.12 orf, encoded by GenBank FT Accession Number Z81360, and M. leprae hypothetical protein FT MLCB2052.40, encoded by GenBank Accession Number Z98604" FT /db_xref="GOA:O33511" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:O33511" FT /protein_id="AAB82050.1" FT /translation="MAVSPPVCDFGWKAPDFRLPDTSGRFWSLDDIRGPKGLLIMFICN FT HCPYVQAILDRLQRDAEALMDLGIGVAAISSNDVASYPEDSPANMARLAAERGFRFPYL FT FDETQAVAKAYDAICTPDFFGFNAECQLQYRGRLDASGRTPGPADARRELYEAMLSVAE FT TGQGPRDQIASMGCSIKWKE" FT gene 3043..3702 FT /gene="cbbZ" FT CDS 3043..3702 FT /codon_start=1 FT /transl_table=11 FT /gene="cbbZ" FT /product="phosphoglycolate phosphatase" FT /EC_number="3.1.3.18" FT /db_xref="GOA:O33512" FT /db_xref="InterPro:IPR006346" FT /db_xref="UniProtKB/Swiss-Prot:O33512" FT /protein_id="AAB82051.1" FT /translation="MAPALIFDLDGTLIDSAPAIHKVSNDVLRARGYAPLGLDQIRSFV FT GQGAPHLVRCLLTTAGEDPEGPLFDAIYADLVSRYETDVEGNTLYPGVITALQRLREMG FT CPMAITTNKPYKPALAAIAHVGLTDYFQLVIGGDSLPTRKPNPEMVNEARRVLRRPHAL FT YIGDSEIDAQTAQNAGLPFVIYTEGYRKTPLDALPHAAKFHDFSALPGIVEGWTWS" FT gene 3682..4376 FT /gene="cbbY" FT RBS 3682..3685 FT /gene="cbbY" FT CDS 3693..4376 FT /codon_start=1 FT /transl_table=11 FT /gene="cbbY" FT /product="CbbY" FT /db_xref="GOA:O33513" FT /db_xref="InterPro:IPR005833" FT /db_xref="UniProtKB/Swiss-Prot:O33513" FT /protein_id="AAB82052.1" FT /translation="MELKALIFDVDGTLAETEEVHRQAFNETFAAQGLDWYWSKEDYRT FT LLRTTGGKERMAKHRENLGSGPSDAKIADLHKAKTQRYVEIIASGQVGLLPGVAELIDR FT AKASGLRLAIATTTTRANVDALIAATFSKPAGDIFEVIAAGDEVAQKKPAPDVYLRALQ FT GLGLPPAACLAFEDSRAGLASARAAGLRVVLTPSEYTRGDDFSAADWRIPDLSAAATQA FT IPELP" FT CDS 4437..4877 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /db_xref="GOA:O33514" FT /db_xref="InterPro:IPR005939" FT /db_xref="UniProtKB/TrEMBL:O33514" FT /protein_id="AAB82053.1" FT /translation="MDLRTLTPDFAVAPQIALDDIAEAARLGFRTLINNRPDEEVESGL FT NAALQAAAAAAGLSYVHLPYYPGELTPDLIAGFEAALAAADAPVLAWCRSGTRSSHLWA FT LSQAGQRPLEEIVQTAQNAGYDLSALVPMLRAKAADSSGVIV" FT CDS 5054..5806 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /db_xref="GOA:O33515" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:O33515" FT /protein_id="AAB82054.1" FT /translation="MLDHLEKLLVADDIATIWSMHCAQMAKFGFDRLIYGFTRFSATQN FT LGSLDDTLILSNHDPAYLNSFLGAGLFSEAPMVKWAIDSVGACSWRMVAERMAAGELTE FT GERKVIELNRRFQVLAGYSIGFPDTSARAKGAIGLCAQPGLTQADVDAIWDEHGRDLRV FT LNSIMHLKISALPFSTTRRPLTARQREVLEWVGDGKTSADIAQILGLTTATVEKHLRLA FT REALEVETTAQALLKASMQKQLFITSAP" XX SQ Sequence 5960 BP; 1123 A; 1908 C; 1857 G; 1072 T; 0 other; ctgcaggaca tcatcaacga attcggcggg gcgatgccgc aaaccttcgg cgtgccggtc 60 gaggaaatcg tgcgcggcat caagatgggc gtgcgcaagg tcaatatcga caccgactgc 120 cgcatgcgga tgaccgggca gttccgccgc atcgccgagc agaacaaggc cgaattcgat 180 ccgcgcaaat tcctcaaacc cgcgatggat gcgatgcgcg atctgtgcaa ggcgcgtctt 240 gaagccttcg gcaccgcggg ccatgcttcg aaaatcaagg tcatcccgat ggatgacatg 300 gcgaaacgct atgccagcgg ctcgcttgcg ccgaaaacca actgatcgaa aggacccctc 360 atcatggatc agtctaaccg ttacgcccgg cttgacctca aggaagccga tctcatcgcc 420 ggcgggcgcc atgtgctctg cgcctatatc atgaagccca aggcgggcta cggctatctg 480 gaaaccgccg cccatttcgc cgccgaaagc tcgaccggga ccaacgtcga agtgtccacc 540 accgacgatt tcacccgcgg cgtcgatgcg ctggtctatg agatcgaccc ggaaaaagag 600 atcatgaaga tcgcctatcc ggtcgagctc tttgaccgca acatcatcga cggcggggcg 660 atgctgtgct cgttcctgac gctgacgatc ggcaacaacc agggcatggg cgacgtcgaa 720 tacgccaaga tgcacgattt ctacgtgccg ccctgctatc tgcgcctgtt cgacggcccc 780 tcgatgaaca tcgccgacat gtggcgggtt ctgggccgtc cggtggtcga tggcggcatg 840 gtcgtcggca cgatcatcaa gccgaagctg ggtctgcgtc cgaagccctt tgcggacgcc 900 tgctatgaat tctggctggg tggcgatttc atcaagaatg acgagccgca gggcaaccag 960 accttcgcgc cgctgaagga gaccatccgt ctggtggcgg atgcgatgaa acgggcgcag 1020 gacgaaaccg gcgaagccaa gctcttctcg gccaacatca ccgccgacga tcattacgaa 1080 atggtcgccc gtggcgaata catccttgaa acctttggcg aaaatgccga tcacgtcgcc 1140 ttcctcgtgg atggctacgt caccggcccg gcggcgatca ccaccgcgcg gcgctccttc 1200 ccgcggcagt tcctgcacta ccaccgcgcg ggccatggcg ccgtgacctc gccgcagtcg 1260 atgcgcggct acaccgcctt cgttctgtcc aagatgtcgc gtctgcaagg ggctagcgga 1320 atccacaccg gcacgatggg ctatggcaag atggaaggcg atgcttccga caagatcatg 1380 gcctacatgc tgaacgacga ggcggcgcag ggcccgttct accatcagga ctggctcggc 1440 atgaaagcca cgacgccgat catctcgggc ggcatgaacg cgctgcgtct gccgggcttc 1500 ttcgacaacc ttggccattc gaacgtgatc cagacctcgg gcggcggcgc ctttggccac 1560 cttgacggcg caaccgccgg ggcgaaatcg ctgcggcaat cctgcgatgc ctggaaggcg 1620 ggcgtggatc tggtgaccta tgcgaaatcg catcgcgaac ttgcccgggc gttcgagagc 1680 ttcccgaacg atgccgacaa gctctatccg ggctggcgcg ttgctctggg cgtgaactga 1740 acgccgtgat agtcgggcgg ggggacaccc ccgccccaac ccctcaggag accgacatga 1800 ccttcgaccg ttccatcaag atcgccccct cgatcctttc tgccgacttc gccgacttcg 1860 gccgtgaaat ccaggccatc gaggcgcagg gcgccgattg ggtgcatgtc gacgtgatgg 1920 atgggcattt cgtgccgaac ctcacctttg gtccgcccgc cgtcgcggcc ttccgcaagc 1980 atgtgaaaac cgtgatggac gtgcatctca tgatctcgcc ggtcgatgcc tatatcgacg 2040 cttatgcgca ggcgggcgcc gatgtgctga ccgcccatgt cgaggccggg ccgcatatac 2100 accgcacgct gcaggcgatc cgcgccgccg ggatgaagtc gggcgtggcg atcaaccccg 2160 gcacaccggc cgaagcgatc gagcatgtgc ttgatattgc ggatgttgtc tgcgtgatga 2220 cggtgaaccc cggctttggc gggcagaaat atatcgacat gacggccaag gtgcgcaagc 2280 tgcgcgcgat gatcggcgac cgtccggtgc atatcgagat cgacggcggc atggacccgg 2340 tcaccgcgcc cttgatggcg gcagcgggcg ccgatgtctt cgtggccggt tcgggcgtct 2400 tcaagggcgg ctcggtgtcc acccccgagg tctatggcaa gaacatcgcc gcgatccgcg 2460 ccgcggcgca agccgccctc tgaggttcgc gatggccgta tcccctccgg tctgcgactt 2520 cggctggaaa gccccggatt tccgcctgcc cgacacctcg ggcaggttct ggagcctcga 2580 cgacatccgc gggccgaaag gcctgctgat catgttcatc tgcaaccatt gcccctatgt 2640 tcaggcgatc ctcgaccggc tgcaacgcga tgccgaggcg ctgatggatc tgggcatcgg 2700 cgtggcggcg atttcgtcga acgatgtcgc aagctatccc gaggacagcc cggcaaacat 2760 ggcgcgtctg gcggcggaac ggggcttccg tttcccctat ctttttgacg aaacgcaagc 2820 ggtggcaaag gcttacgacg cgatctgcac gccggatttc ttcgggttca acgccgaatg 2880 tcaactgcag tatcgcggcc gtcttgacgc gtcgggccgc accccgggtc cggccgatgc 2940 gcgccgcgag ctttacgagg cgatgctgag cgtggccgaa acgggtcagg gaccgcggga 3000 ccagatcgcc tcgatgggct gttcgatcaa atggaaagag tgatggcgcc agcgctgatt 3060 ttcgatctcg atggcacgct gatcgattcg gcgcccgcca tccacaaggt ctcgaacgat 3120 gtgctgaggg cacgcggcta cgcgcccctc ggccttgatc agatccgcag cttcgttggg 3180 caaggcgccc ctcatctggt gcggtgcctg ctgaccaccg cgggcgaaga cccggaaggg 3240 ccgcttttcg acgcgatcta tgccgatctg gtgagccgct atgagaccga tgtcgagggc 3300 aacacgcttt acccgggtgt gatcacggcc ttgcagcgtc tgcgggagat gggctgcccg 3360 atggcgatca ccaccaacaa gccctacaag cccgctcttg ccgcaatcgc ccatgtcggt 3420 ctgacggatt atttccagct tgtcatcggc ggcgacagcc tgcccacccg caagccgaac 3480 cccgagatgg tgaacgaggc gcgcagagtg ttgcgccgcc cacacgcgct ttacatcggc 3540 gacagcgaga tcgacgcaca gacggcgcaa aacgcgggac tgcccttcgt gatctatacc 3600 gagggctatc gcaagacccc gctcgacgcg ctgccccacg ccgcaaagtt tcacgatttc 3660 agcgccctgc cgggcatcgt tgagggatgg acatggagct gaaggcgctg attttcgatg 3720 tcgacggcac tttggcggaa accgaggaag tccatcggca agccttcaac gagactttcg 3780 cggcgcaggg gctcgactgg tactggtcga aggaagatta tcggacgctt ctgcgcacca 3840 ccggcggcaa ggagcggatg gcgaaacacc gcgaaaatct gggttccggg ccttcggacg 3900 ccaagatcgc cgatctgcac aaagccaaga cgcaacgcta tgtcgagatc atcgcttcgg 3960 ggcaggtcgg cttgctgccg ggcgtcgcgg agctgatcga ccgggcgaaa gcctcgggac 4020 ttcgcctcgc cattgccacc accaccacgc gggccaatgt ggatgcgctg atcgccgcca 4080 ctttcagcaa gcctgccggg gacattttcg aggtgattgc cgccggggac gaggtggcgc 4140 aaaagaaacc cgccccggat gtctatctgc gggcattgca ggggcttggc ctgccgcctg 4200 cggcctgcct ggcctttgaa gacagccgcg ccggtcttgc ctcggccagg gccgccgggc 4260 ttcgggtcgt cctgacgccc tcggaataca cccgcgggga tgacttttcc gccgcggatt 4320 ggcggatccc cgatctgagc gccgccgcga cccaagcgat cccggagctg ccctgagccc 4380 cttgcacctg ccggccgcgc ggtccagagt ggccgcggaa cttgccggag gaagacatgg 4440 acctgcgtac cctgacgccc gatttcgccg tggcgccgca gatcgccctt gacgatatcg 4500 ccgaggccgc ccgcctcggc tttcgcacgc tgatcaacaa tcgcccggat gaagaggtcg 4560 aatccggtct caatgccgcg ctgcaggccg ccgccgccgc cgccgggctg tcctatgtgc 4620 atctgcccta ttatccgggc gaactgaccc ccgatctgat cgccggtttc gaggcggccc 4680 ttgccgcggc cgacgcgccg gttctggcct ggtgccggtc cgggacgcga tcctcgcatc 4740 tgtgggccct gagccaggcc ggacagcggc cgctcgagga gattgtgcag actgcccaaa 4800 atgcgggcta tgatctctct gcccttgtgc cgatgctgcg cgccaaagcc gccgacagca 4860 gcggcgtcat tgtgtgaaga tctaaactta aacacttggt aaaaaagcag aatcgcacag 4920 atcacccgaa gatggtgcga tctgcgacct tgtgacatgc cacgcgctgc ggggcggaac 4980 ggacttgcgc cgaagggtcg acgcatggca aaaccgtgat ctgtgcaagc ttgcgaggtg 5040 tgagacgcgc gcaatgctcg atcatcttga aaaactcctg gtcgccgatg acatcgcgac 5100 catctggagc atgcattgtg cgcagatggc gaagttcggc tttgatcgtc tgatctacgg 5160 gttcacccgt ttcagcgcga cgcagaacct tggctctctc gacgacacgc tgatcctgtc 5220 caaccacgat ccggcctatc tgaattcctt tctgggcgcc ggtctcttct cggaagcgcc 5280 gatggtgaaa tgggccatcg actcggtggg ggcctgttcg tggcgcatgg tcgccgaacg 5340 gatggcggcg ggcgagctga ccgagggcga gcgcaaggtg atcgaactga accgccgctt 5400 tcaggtgctg gcgggctatt cgatcggctt tcccgacaca tccgcccgcg ccaaaggggc 5460 gatcggcctc tgcgcgcagc ccggcctgac acaggccgat gtcgatgcga tctgggacga 5520 acatggccgc gacctgcggg tgctgaattc gatcatgcat ctgaaaatca gcgccctgcc 5580 cttttcgacc acgcgtcggc cgctgaccgc gcgtcagcgc gaggtgctgg aatgggtcgg 5640 cgacggcaag acctcggccg atatcgcgca aatcctcggc ctgaccacgg ccacggtcga 5700 gaaacatctg cgccttgccc gcgaggccct cgaggtcgag accaccgcgc aggccctgct 5760 caaggcctcg atgcagaaac agcttttcat cacctccgcc ccctagcccg ggcgagccat 5820 ccaaaagact gcgacattct ggcatggtaa ggaatacctg actactccga atccatagaa 5880 atgccttaga tacacgtgtt ccgtgagtgg tggcttcggc caagaacggg gaagcagtcg 5940 aagattgatc cgacgagatc 5960 // |
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