 |
|
EBI DbfetchID U17232; SV 1; linear; genomic DNA; STD; PRO; 2090 BP. XX AC U17232; XX DT 07-JAN-1995 (Rel. 42, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Pseudomonas aeruginosa L-aspartate oxidase for NAD biosynthesis (nadB) DE gene, complete cds, and algT gene, partial cds. XX KW . XX OS Pseudomonas aeruginosa OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas. XX RN [1] RP 1-2090 RX DOI; 10.1016/0378-1119(95)00028-5 RX PUBMED; 7737518. RA DeVries C.A., Hassett D.J., Flynn J.L., Ohman D.E.; RT "Genetic linkage in Pseudomonas aeruginosa of algT and nadB: mutation in RT nadB does not affect NAD biosynthesis or alginate production"; RL Gene 156(1):63-67(1995). XX RN [2] RP 1-40 RX PUBMED; 7961421. RA DeVries C.A., Ohman D.E.; RT "Mucoid-to-nonmucoid conversion in alginate-producing Pseudomonas RT aeruginosa often results from spontaneous mutations in algT, encoding a RT putative alternate sigma factor, and shows evidence for autoregulation"; RL J. Bacteriol. 176(21):6677-6687(1994). XX RN [3] RP 1-2090 RA Ohman D.E.; RT ; RL Submitted (16-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL Dennis E. Ohman, Dept. of Microbiology and Immunology, University of RL Tennessee and VA Medical Ctr., 858 Madison Ave., Memphis, TN 38163, USA XX FH Key Location/Qualifiers FH FT source 1..2090 FT /organism="Pseudomonas aeruginosa" FT /map="68 min" FT /strain="FRD1" FT /mol_type="genomic DNA" FT /dev_stage="mucoid (alginate overproducing)" FT /clone="pCD250" FT /db_xref="taxon:287" FT CDS complement(<1..40) FT /codon_start=1 FT /transl_table=11 FT /gene="algT" FT /note="also called algU; putative sigma factor for alginate FT gene expression" FT /db_xref="GOA:Q06198" FT /db_xref="InterPro:IPR000838" FT /db_xref="InterPro:IPR007627" FT /db_xref="InterPro:IPR013249" FT /db_xref="InterPro:IPR013324" FT /db_xref="InterPro:IPR013325" FT /db_xref="InterPro:IPR014284" FT /db_xref="InterPro:IPR014286" FT /db_xref="UniProtKB/Swiss-Prot:Q06198" FT /citation=[2] FT /protein_id="AAA92355.1" FT /translation="MLTQEQDQQLVER" FT CDS 449..2065 FT /codon_start=1 FT /transl_table=11 FT /gene="nadB" FT /product="L-aspartate oxidase" FT /function="NAD biosynthesis" FT /db_xref="GOA:Q51363" FT /db_xref="InterPro:IPR003953" FT /db_xref="InterPro:IPR004112" FT /db_xref="InterPro:IPR005288" FT /db_xref="InterPro:IPR015939" FT /db_xref="UniProtKB/Swiss-Prot:Q51363" FT /citation=[1] FT /protein_id="AAA92356.1" FT /translation="MSQHYQHDVLVIGSGAAGLSLALTLPEHLRIAVLSKGELSQGSTY FT WAQGGVAAVLDDTDTVESHVEDTLVAGGGLCREDAVRFTVEHSREAIQWLIEQGVPFTR FT DEQHNHEEGSFEYHLTREGGHSHRRIIHAADATGAAIFNTLLAQARRRPNIELLSQRVA FT VDLITERKLGLPSKRCLGAYVLNRESGEVDTFRARFSVLASGGASKVYLYTSNPDGNSG FT DGIAMAWRAGCRVGNLEFNQFHPTCLYHPQAKSFLITEALRGEGALLRLPNGERFMPRF FT DPRGELAPRDIVARAIDHEMKRLGIDCVYLDISHKPAEFIKAHFPTVYERCLDFGIDIT FT QQPIPVVPAAHYTCGGVLVDQHGHTDVPGLYAIGETTFTGLHGANRMASNSLLECFVYA FT RSAAADMLQRLPGTPVPESLPSWDASQVTDSDEDVIIAHNWDELRRFMWDYVGIVRTNK FT RLQRAQHRVRLLLSEIDEFYSNYKVSRDLIELRNLALVAELIIRSAMQRRESRGLHYTL FT DYPDLLPEARDTILVPPIYGD" XX SQ Sequence 2090 BP; 383 A; 733 C; 626 G; 348 T; 0 other; cccgttcaac cagttgctga tcctgttcct gggttagcat gaaagctcct cttcgaacct 60 ggaggagctt cgagcgtccc agcgaatcgt cttgccaaga tagactcggg cttcttgcaa 120 aagttctccc ctccaagcat gcgtcacgag ttttttcctc gctcgtgacg tgcggccccg 180 gacatcgtgt ccgggccccg cgaaaatgga ttgcatcggg ctcagggccc ggcctctgtg 240 ccgctgggta ggccaaccgg acgaggtctt caggcatcct gctttggaac cgatgcgtct 300 aagaaagttc cagcactaca tcgccccgct ctgatgacgc ctgccgatga caggcccgca 360 gctcatccgg cggaccggca gcgggggtgc gctattgtgc cgccaggccc ttctatatac 420 tagggctcca ccacggggaa atgcgggcat gagccaacat tatcaacacg atgtactggt 480 catcggcagc ggcgccgccg gcctgagtct ggccttgacc cttccggaac acctgcgcat 540 cgccgtcctc agcaagggcg aactgtcgca gggctcgacc tactgggccc agggcggcgt 600 ggccgccgtg ctggacgata ccgacaccgt ggaatcccac gtcgaggaca ccctggtcgc 660 cggtggcggc ctgtgccgcg aggatgcggt gcgcttcacc gtggagcata gccgcgaagc 720 gatccagtgg ctgatcgaac agggggtgcc cttcacccgc gacgagcagc acaaccacga 780 ggaaggcagc ttcgaatacc acctgacccg cgaaggcggg cacagccacc ggcgcatcat 840 ccatgccgcc gacgccaccg gcgccgcgat cttcaatacc ttgctggccc aggcccggcg 900 gcgaccgaac atcgagttgc tgtcgcagcg ggtggcggtc gacctgatca ccgagcgcaa 960 gctaggcctg ccgagcaagc gctgcctggg cgcctacgtg ctgaatcggg aaagcggcga 1020 agtcgatacc ttccgtgccc gcttcagcgt gctggcctcc ggtggcgcga gcaaggtcta 1080 cctttatacc agcaatcccg acggcaactc cggcgacggc atcgccatgg cctggcgcgc 1140 cggctgccgg gtcggcaacc tggagttcaa ccagttccac ccgacctgcc tgtaccaccc 1200 gcaggccaag agtttcctca tcaccgaggc attgcgcggc gaaggcgccc tgctccgcct 1260 gcccaatggc gagcgtttca tgccgcgctt cgacccgcgt ggcgagctgg cgccccgaga 1320 catcgtggcc cgcgccatcg accatgaaat gaagcgtctg gggatcgact gtgtctacct 1380 ggacatcagc cacaagccgg ccgagttcat caaggcgcac ttccccaccg tctacgagcg 1440 ctgcctggac ttcggcatcg acattaccca gcaaccgatc ccggtagtgc cggccgctca 1500 ctatacctgc ggcggcgtgc tcgtcgacca gcacgggcat accgacgtgc cgggcctcta 1560 cgccatcggc gaaaccacct tcaccggcct gcacggcgcc aaccgcatgg ccagcaattc 1620 gctgctggaa tgcttcgtct atgcccgttc tgccgccgcc gacatgctcc agcgcctgcc 1680 cggcacgccc gtgccggaaa gcctgccgag ctgggacgcc agccaggtca ccgactccga 1740 cgaggacgtg atcatcgcgc acaactggga cgaactgcgg cgtttcatgt gggactacgt 1800 cggtatcgtg cgcaccaaca agcgcctgca gcgcgcccag caccgggtac gcctgctgct 1860 cagcgagatc gacgagttct acagcaacta caaggtcagc cgcgacctga tcgagttgcg 1920 caacctggca ctggtcgccg aactgatcat ccgctcggcc atgcaacgcc gcgaaagccg 1980 gggcctgcac tacacgctgg attatccgga cctgctgccc gaagcccgcg acactatcct 2040 ggtgccgccc atctacggcg actgaagcgc aggcggacac gcaggcgccg 2090 // |
|