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EBI DbfetchID U15179; SV 1; linear; genomic DNA; STD; PRO; 3781 BP. XX AC U15179; XX DT 14-OCT-1994 (Rel. 41, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Bacteroides ovatus arabinosidase (asdII) gene, complete cds and putative DE transketolase, partial cds. XX KW . XX OS Bacteroides ovatus OC Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; OC Bacteroides. XX RN [1] RP 1-3781 RA Whitehead T.R.; RT "Arabinosidase (asdII) gene from Bacteroides ovatus"; RL Unpublished. XX RN [2] RP 1-3781 RA Whitehead T.R.; RT ; RL Submitted (28-SEP-1994) to the EMBL/GenBank/DDBJ databases. RL Terence R. Whitehead, National Center for Argicultural Utilization RL Research, ARS, USDA, 1815 N. University Street, Peoria, IL 61604, USA XX FH Key Location/Qualifiers FH FT source 1..3781 FT /organism="Bacteroides ovatus" FT /strain="V975" FT /mol_type="genomic DNA" FT /db_xref="taxon:28116" FT CDS <1..1311 FT /codon_start=1 FT /transl_table=11 FT /note="ORF1" FT /db_xref="InterPro:IPR012878" FT /db_xref="UniProtKB/TrEMBL:Q45327" FT /protein_id="AAA50392.1" FT /translation="DPNYVNYYERALYNHILASQEPDKGGFVYFTPMRPGHYRVYSQPE FT TSMWCCVGSGLENHTKYGEFIYAYRKDTLYVNLFIPSQLTWKEQGIILTQETRFPDDGK FT VTLRINEAPKKKRTLMIRIPEWANQSKGYSVSINGKRKMFVMPKGNQYLPLSRKWEKGD FT VITFHLPMKVSVEQIPDKKDYYAFLYGPIVLAASTGTEHLDGLYADDSRGGHIAHGKQI FT PLQEVPMLIGNPDSICKSLQKEQNSRITFSYNGEVYPAQDKALELVPFFRLHNSRYAVY FT FRQASEEQFKAIQEEMATAERKATELANQTIDLIFPGEQQPESDHGIQYEQAETGTIKD FT RHFRRAKGWFGYQLKVKEEASRLLITVRKDDRNKVAILLNNEKLAVHPTVSEADKDGFI FT TLSYVLPQKLNTGSCLIRFIPDGTEWTSAVYEVRLLK" FT CDS 1443..2987 FT /codon_start=1 FT /transl_table=11 FT /gene="asdII" FT /product="arabinosidase" FT /function="xylan degradation" FT /EC_number="3.2.1.55" FT /db_xref="GOA:Q59219" FT /db_xref="InterPro:IPR010720" FT /db_xref="UniProtKB/Swiss-Prot:Q59219" FT /protein_id="AAA50393.1" FT /translation="MKAKLLVSTAFLAASVSLSAQKSATITVHADQGKEIIPKEIYGQF FT AEHLGSCIYGGLWVGENSDIPNIKGYRTDVFNALKDLSVPVLRWPGGCFADEYHWMDGI FT GPKENRPKMVNNNWGGTIEDNSFGTHEFLNLCEMLGCEPYVSGNVGSGTVEELAKWVEY FT MTSDGDSPMANLRRKNGRDKAWKLKYLGVGNESWGCGGSMRPEYYADLYRRYSTYCRNY FT DGNRLFKIASGASDYDYKWTDVLMNRVGHRMDGLSLHYYTVTGWSGSKGSATQFNKDDY FT YWTMGKCLEVEDVLKKHCTIMDKYDKDKKIALLLDEWGTWWDEEPGTIKGHLYQQNTLR FT DAFVASLSLDVFHKYTDRLKMANIAQIVNVLQSMILTKDKEMVLTPTYYVFKMYKVHQD FT ATYLPIDLTCEKMSVRDNRTVPMVSATASKNKDGVIHISLSNVDADEAQEITINLGDTK FT AKKAIGEILTASKLTDYNSFEKPNIVKPAPFKEVKINKGTMKVKLPAKSIVTLELQ" FT CDS 3130..>3781 FT /codon_start=1 FT /transl_table=11 FT /product="putative transketolase" FT /note="ORF3" FT /db_xref="GOA:Q45328" FT /db_xref="HSSP:1QGD" FT /db_xref="InterPro:IPR005474" FT /db_xref="UniProtKB/TrEMBL:Q45328" FT /protein_id="AAA50394.1" FT /translation="MNDNKLMNRAADNIRILAASMVEKANSGHPGGAMGGADFVNVLFS FT EFLVYDPENPRWEGRDRFFLDPGHMSPMLYSTLALTGKFTLDELKEFRQWGSPTPGHPE FT VDIMRGIENTSGPLGQGHTFAVGAAIAAKFLKARFDEVMNQTIYAYISDGGIQEEISQG FT SGRIAGALGLDNLIMFYDSNDIQLSTETKDVTVEDTAMKYEAWGWNVLSINGND" XX SQ Sequence 3781 BP; 1150 A; 789 C; 866 G; 976 T; 0 other; gatcccaact acgtaaacta ttacgaacgt gcgctttaca atcatattct agcgtcacaa 60 gagccggata aaggtggatt tgtctacttc actcctatgc gtccgggaca ttatcgcgtg 120 tactcacaac cggaaacatc aatgtggtgc tgtgtaggtt caggcttgga gaatcatacc 180 aaatacggtg aatttatcta tgcgtatcgg aaagacactc tttatgtcaa tctcttcatt 240 ccttcacaac tgacctggaa agagcaaggc attattttga cacaggaaac ccgtttcccc 300 gatgacggca aggtaacttt gcgaataaat gaagcgccta agaaaaaacg tactttaatg 360 atacgtattc cggaatgggc gaaccaatcc aaaggatata gcgtcagcat caatggaaaa 420 agaaaaatgt tcgttatgcc aaaaggtaac cagtatcttc ctctctcccg caaatgggaa 480 aaaggggatg tcattacttt ccacttgcct atgaaagtca gcgtagaaca aattcccgac 540 aagaaagatt attatgcttt cttatatggt ccgatcgttc ttgcagcttc cacaggcact 600 gaacatcttg acggtttata tgccgatgac agtcgtggcg gacatatcgc tcatggcaaa 660 caaattcctc tgcaagaagt tccgatgctg ataggaaatc cagattcaat ctgcaagtct 720 cttcagaaag aacagaatag ccggattact ttcagctata acggagaggt ttatcctgca 780 caagacaagg cattggaact cgttccgttc ttccgcctgc ataattcccg ttatgccgtt 840 tatttccggc aggcaagcga agagcagttt aaagcgattc aggaagagat ggcaacggct 900 gaacgaaaag caacggaatt ggctaatcaa accattgacc ttatcttccc tggcgaacag 960 caaccggagt ctgaccatgg catccagtat gaacaggcag aaacagggac gattaaagac 1020 cggcatttcc gacgtgccaa aggttggttc ggttatcaat tgaaggtaaa agaggaagca 1080 agccgcctcc tgattacggt acggaaagat gaccgcaata aagtggctat tcttttgaat 1140 aacgaaaagt tggctgttca tccgactgtc agtgaagcgg ataaagacgg tttcataacc 1200 ctttcatacg ttctgcctca aaaactgaat acgggtagtt gtctgatacg ttttatccct 1260 gacgggacgg aatggacctc tgccgtttat gaagttcgtt tactaaaata gaagtcacca 1320 cagattacac ggattaacac agattattta tgggttataa catgatagca gtcagaataa 1380 aatcaatctg tgataatctg cgtaatctgt ggtaaaaaat aatcattaaa caaataccat 1440 ttatgaaagc aaaactatta gtcagcacgg cttttctggc agcatctgta tctctttctg 1500 cacaaaagag tgctaccata accgtacatg ccgaccaagg caaagaaatc ataccgaagg 1560 aaatttacgg ccagtttgcc gaacacttgg gttcatgtat ctacggcggt ctttgggtag 1620 gcgaaaactc ggatattcct aatatcaagg gatatcgcac agacgtattc aatgcactga 1680 aagacttgtc cgttcccgtt cttcgctggc cgggcggatg ctttgccgat gaataccact 1740 ggatggatgg cattggtccg aaagagaacc gtccgaagat ggtgaacaac aactggggcg 1800 gtaccattga agacaacagt ttcggaacgc acgagttttt gaatctttgc gaaatgctgg 1860 gttgcgaacc atacgtgagt ggaaatgtag gtagcggcac agtggaagag cttgccaaat 1920 gggtggaata tatgacttct gacggagact cgcctatggc caaccttcgc cgtaagaatg 1980 gtcgcgacaa agcatggaaa ttgaaatatc tcggcgtagg aaatgaaagc tgggggtgcg 2040 gtggcagcat gcgtccggaa tattacgcag acttatatcg tcgttattct acttattgcc 2100 gcaattatga cggcaaccgt ctgttcaaga ttgccagtgg cgcaagtgac tatgattaca 2160 aatggacaga tgtattgatg aatcgtgtag gacaccggat ggacggtctt tctctgcact 2220 attataccgt aaccggatgg agtggcagca aaggatcagc cactcaattc aacaaggatg 2280 attattactg gacgatgggc aaatgtctgg aagtggaaga tgtactcaag aaacattgta 2340 ccatcatgga caaatatgac aaggacaaga aaatcgctct cttactggac gaatggggaa 2400 cctggtggga tgaggaaccg ggaaccatca aaggacatct gtatcagcag aacacattgc 2460 gtgatgcttt cgtggcttct ttaagtcttg atgtattcca taaatataca gaccgcctga 2520 aaatggcaaa tatcgcgcag attgtcaatg tacttcaatc gatgattctg acaaaagaca 2580 aagaaatggt gttgacgcct acttattatg tcttcaagat gtataaagta caccaggatg 2640 ccacttatct tcctatcgac ctgacttgcg aaaagatgag tgtacgtgat aaccgcaccg 2700 ttccgatggt aagcgccaca gcttccaaaa ataaagatgg ggtgatccat atttctcttt 2760 ccaatgtaga tgctgatgaa gcgcaggaaa tcaccatcaa tctgggtgat acgaaagcca 2820 agaaagctat cggagagatt ctgaccgctt ccaaactgac cgattacaat tcttttgaaa 2880 aacctaatat tgtaaaaccg gcacctttca aagaggtaaa aatcaataaa ggtacaatga 2940 aggtaaaact tcctgctaag tccattgtta ctttagagtt acagtaattt tagagtaatt 3000 acttattgta tcacaaacaa gaagaccgta aaattgtcga taaaaaagat agctcttttg 3060 gattgttaaa tccacataaa gagttatctt tgcgaacaat ctgacagaaa tcaattaaat 3120 tttaatgata tgaacgataa caaacttatg aatcgtgcag cggataacat ccgtattctt 3180 gctgcttcaa tggttgagaa agccaattcc ggtcacccgg gtggcgccat gggtggtgct 3240 gattttgtaa atgtactctt ctctgagttt ctagtatacg atcctgaaaa tccccgttgg 3300 gaaggacgtg accgcttctt cctcgacccg ggccacatgt ctccgatgct ttattctacg 3360 ttggcattga caggaaaatt cacgctggac gagctgaaag aattccgtca atggggaagc 3420 cctactccgg gacatcctga agtggacatc atgcgtggca tcgaaaatac ttctggtccg 3480 ttgggacagg gacatacttt tgcagtaggt gctgctatcg ctgccaaatt cttgaaagcc 3540 cgtttcgacg aggtgatgaa tcagaccatt tacgcttaca tctctgacgg tggtatccag 3600 gaagaaatct ctcaaggttc cggacgtatt gccggtgcat tgggattgga caacctgatt 3660 atgttctatg actccaacga tattcagctt tctacagaaa cgaaagatgt aaccgttgaa 3720 gatactgcca tgaaatatga agcatgggga tggaacgtac ttagtatcaa cggtaatgat 3780 c 3781 // |
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