 |
|
EBI DbfetchID U09309; SV 1; linear; unassigned DNA; STD; PRO; 3184 BP. XX AC U09309; XX DT 13-DEC-1994 (Rel. 42, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Salmonella typhimurium LT2 ygiJ and ygiK genes, complete cds, and parF DE gene, partial cds. XX KW . XX OS Salmonella enterica subsp. enterica serovar Typhimurium OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Salmonella. XX RN [1] RP 1-3177 RA Cong J., Schmid M.B.; RT "S. typhimurium region downstream of parF/plsC gene"; RL Unpublished. XX RN [2] RP 1-3184 RX PUBMED; 1751451. RA Luttinger A.L., Springer A.L., Schmid M.B.; RT "A cluster of genes that affects nucleoid segregation in Salmonella RT typhimurium"; RL New Biol. 3(7):687-697(1991). XX RN [3] RP 1-3184 RA Schmid M.B.; RT ; RL Submitted (29-APR-1994) to the EMBL/GenBank/DDBJ databases. RL Molly B. Schmid, Univ. Houston, Biology, 4800 Calhoun St., Houston, TX RL 77204, USA XX FH Key Location/Qualifiers FH FT source 1..3184 FT /organism="Salmonella enterica subsp. enterica serovar FT Typhimurium" FT /map="68 min" FT /strain="LT2" FT /mol_type="unassigned DNA" FT /clone="pMBS252" FT /db_xref="taxon:90371" FT CDS <1..41 FT /codon_start=3 FT /transl_table=11 FT /gene="parF" FT /note="alternate gene name=plsC" FT /db_xref="GOA:P0A257" FT /db_xref="InterPro:IPR002123" FT /db_xref="InterPro:IPR004552" FT /db_xref="UniProtKB/Swiss-Prot:P0A257" FT /citation=[1] FT /citation=[2] FT /protein_id="AAA56678.1" FT /translation="YPVAEREATGKV" FT RBS 106..109 FT /gene="ygiJ" FT /citation=[1] FT CDS 115..1512 FT /codon_start=1 FT /transl_table=11 FT /gene="ygiJ" FT /product="YgiJ" FT /db_xref="GOA:P0A1C5" FT /db_xref="InterPro:IPR006311" FT /db_xref="InterPro:IPR008972" FT /db_xref="InterPro:IPR011706" FT /db_xref="InterPro:IPR011707" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/Swiss-Prot:P0A1C5" FT /citation=[1] FT /citation=[2] FT /protein_id="AAA56679.1" FT /translation="MSFSRRQFLQASGIALCAGAIPLRANAAGQQQPLPVPPLLESRRG FT QPLFMTLQRAHWSFTQGTRAPVWGVNGRYLGPTIRVWKGDDVKLIYSNRLAENVSMTVA FT GLLVPGPLMGGPARMMSPNADWAPVLPIRQSAATLWYHANTPNRTAQQVYNGLAGMWLV FT EDDISKTLPIPNHYGVDDFPVIIQDKRLDNFGTPEYSEPGSGGFVGDTLLVNGAQSPYV FT EVSRGWVRLRLLNASNSRRYQLQMSDGRALHVISGDQGFLPAPVSVKQLSLAPGERREI FT LVDMTNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRL FT LPTEIMSGAPVRSRDISLGDDPGINGQLWDVNRIDITAQQGTWERWTVRADMPQSFHIE FT GVSFLIRNVNGAMRSRKIEAGKIPSGWMGKSNCWSITVSRPGRTSRSISTARRWKWLTA FT ARLGKCW" FT CDS complement(1569..2876) FT /codon_start=1 FT /transl_table=11 FT /gene="ygiK" FT /product="YgiK" FT /note="similar to Rhodobacter capsulatus integral membrane FT protein, PIR Accession Number S19739" FT /db_xref="GOA:P40800" FT /db_xref="InterPro:IPR004681" FT /db_xref="InterPro:IPR010656" FT /db_xref="UniProtKB/Swiss-Prot:P40800" FT /citation=[1] FT /protein_id="AAA56680.1" FT /translation="MDFEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPPD FT AAISVISQKMTVGLDGFTLLAIPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHC FT NILANTLFGAISGSRVASAPAVGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPPSNV FT LIVYSLASGGTSVAALFLAGYLPGILTALALMTVAALYAHRHHYPVAERINLRQFLSVF FT RDSLPSLLLIFIIIGGIIGGVFTPTEASAIAVIYSLALAAIYREINVSKLRDILLDSVV FT TSSIVLLLVGCSMGMSWAMTNADVPELINEMITSVSENKWVILLIINLILLFVGTFMDI FT TPAILIFTPIFLPIAQHLGIDPVHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKISIDK FT VVKPLLPMFLALFVVMAMICYFPQLSLLLPTLFAPS" FT RBS complement(2882..2885) FT /gene="ygiK" FT /citation=[1] XX SQ Sequence 3184 BP; 788 A; 816 C; 909 G; 671 T; 0 other; ggtatccggt tgcggaacgt gaagcgaccg gtaaggttta agcagcctta ctctgttatt 60 gtagaaatca ttttttcagg cacaactctt tagcctgttt tacatggagc ttatatgtca 120 ttcagtcggc gtcagtttct tcaggcatcg ggaatcgcac tatgtgcagg cgcgattccc 180 ctcagggcga atgctgccgg tcagcaacag ccgttgcctg ttccgccgtt gctggagtcc 240 cgtcgcgggc agccgttgtt tatgacgcta cagcgagcgc actggtcctt tacgcaaggc 300 acgcgcgcgc cggtctgggg agtgaacggt cgttatctgg ggccgacaat ccgcgtctgg 360 aaaggcgatg acgttaaact catctatagc aaccgcctgg cggaaaatgt ctccatgacg 420 gttgctggtt tactggtgcc ggggccgctg atgggtggcc cggcgcgtat gatgtcgccg 480 aacgcggact gggcgccggt gttgccgatt cgtcagagcg ccgcgacgct gtggtatcac 540 gctaacacgc ctaaccgcac cgcgcagcag gtgtataacg gcctggcagg aatgtggctg 600 gtcgaagacg acatcagtaa aacgctgccc attccgaacc attacggcgt ggatgatttt 660 cccgtcatta tccaggataa acggctggat aactttggga cgccggagta cagcgaaccg 720 ggaagcggtg gttttgtcgg cgatacgctg ctggtgaacg gcgcgcaaag cccctatgtc 780 gaagtgtccc gcggctgggt gcggttacgg ttgttgaacg cctcgaactc gcggcgctat 840 cagcttcaga tgagcgatgg ccgggcgctg catgtgattt caggcgatca gggcttttta 900 cctgcgccgg tttccgtcaa acagttgtca ctggcgcccg gcgagcgacg tgaaatcctg 960 gttgatatga ccaacggcga cgaagtctcg atcacctgcg gggaagcggc cagcatagtc 1020 gatcggattc gcggtttctt tgagccttcc agtattctgg tttcgaccct ggtgctgacg 1080 ttacggccaa ccggattgct gccgctggtg accgataatc tgccgatgcg tctgttgccg 1140 acggagatca tgagcggcgc gcctgtccgc agtcgggaca tcagtcttgg cgacgatccg 1200 gggattaacg gccaactgtg ggatgtgaat cgcattgata ttaccgccca acaaggcacc 1260 tgggagcgct ggacggtacg cgccgatatg ccgcagtcgt tccatattga gggcgtctct 1320 ttcctgattc gtaacgtcaa cggcgctatg cgttcccgga agatagaggc tggaaagata 1380 ccgtctgggt ggatgggcaa gtcgaactgc tggtctatta cggtcagccg tcctggccgc 1440 acttcccgtt ctatttcaac agccagacgc tggaaatggc tgaccgcggc tcgattgggc 1500 aaatgctggt gaatccagcg tcgtaaagcg tccgagtacg ggtctgaata gcgcagaccc 1560 gtcaggtttc aggaaggagc aaacagcgtg ggaagcagca gactcaactg cgggaagtag 1620 caaatcatcg ccatgaccac aaagagtgcc agaaacatcg gtaatagcgg tttgacgact 1680 ttatcaatac tgattttgcc gatactgcaa ccgacgaaca aaatagtgcc taccgggggc 1740 gtacacagtc cgatggttaa attgaaaacc ataataatgc caaaatggac agggtcgatt 1800 cccagatgtt gagcaatggg aaggaaaata ggcgtaaaga ttagaatagc cggggtaata 1860 tccataaacg tcccgacgaa taacaaaatg agattgataa tcagcaagat gacccattta 1920 ttttcggaca cgctggtaat catttcatta atcagttcag gaacatcagc attggtcatc 1980 gcccatgaca ttcccattga gcagccgacc agtaagagaa caatagagct ggttactacc 2040 gaatccagca gaatatcgcg caacttactc acattaattt ctcgataaat ggccgccagc 2100 gccaggctat agattaccgc gatcgcagag gcctctgttg gcgtaaatac gccgccgata 2160 atgccgccga taataataaa tatcagcaac aggctgggca acgaatcgcg gaataccgac 2220 agaaactgcc gcaggttgat gcgttcggca accgggtaat ggtggcgatg ggcatacagc 2280 gccgctaccg tcattaaagc cagcgcggtt aagatgccgg gcaggtagcc cgccaaaaac 2340 agggcggcga cagaggtgcc gccgctagcc agcgaataga caattagcac attgctgggc 2400 gggatcatca ggccaatcgg cgccgaagcg acgttgatcg ccgtagagaa cgccggagag 2460 tagccctctt tttcctgtaa tggcgacatg atgccgccca ccgccggcgc agaagcgacc 2520 cgcgagccgg atatcgcgcc aaacagggtg ttcgccagaa tattgcagtg cgccagcgaa 2580 ccgggaaggc ggccaactaa cgcctgagcc agattcacca ggcgccgggc gattcccccg 2640 gtattcatga tattgccggc taacacaaaa aaggggatcg ccagcagcgt aaagccatcg 2700 agaccgacgg tcattttttg cgaaataacc gagattgccg catccggggg aagggctatc 2760 aggattgaga ataaggacga cagcccgata gcgaatgtaa taggaacgcc gaccgccagt 2820 ataatggcaa agctgccaaa taaaacaatt attgggtaaa tatattcaaa gtccatatat 2880 ccctcgttag cgaagatggc gctgatgata attatcaata acgttcacaa tgtgtagtac 2940 accaggatga ccgcgctaat cggcatgacc caatagactt tatccatagg ccattttaat 3000 accggggaca tttggctgac gtgcgccgct ttttcaacaa taatatcacc gccgtacacc 3060 ataaaaatca gcgcgaacac ggtaataatc acctgaatga tactgtcgag catgagggcg 3120 gggcgttcgg gagagttttt gcgctaacaa atcgatacga cgtcgacctc gagggggggc 3180 accg 3184 // |
|