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EBI DbfetchID U09230; SV 1; linear; genomic DNA; STD; PRO; 6135 BP. XX AC U09230; XX DT 23-APR-1995 (Rel. 43, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 8) XX DE Buchnera aphidicola shikimate dehydrogenase (aroE) gene, complete cds; 23S DE ribosomal RNA and 5S ribosomal RNA genes, complete sequence; and DE cysteinyl-tRNA synthetase (cysS) gene, partial cds. XX KW . XX OS Buchnera aphidicola OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Buchnera. XX RN [1] RP 1-6135 RX DOI; 10.1016/0378-1119(94)00910-K RX PUBMED; 7535281. RA Rouhbakhsh D., Baumann P.; RT "Characterization of a putative 23S-5S rRNA operon of Buchnera aphidicola RT (endosymbiont of aphids) unlinked to the 16S rRNA-encoding gene"; RL Gene 155(1):107-112(1995). XX RN [2] RP 1-6135 RA Rouhbakhsh D.; RT ; RL Submitted (26-APR-1994) to the EMBL/GenBank/DDBJ databases. RL Dadbeh Rouhbakhsh, Microbiology, University of California at Davis, Davis, RL CA 95616, USA XX RN [3] RC Sequence update by submitter RP 1-6135 RA Baumann P.; RT ; RL Submitted (26-JAN-1999) to the EMBL/GenBank/DDBJ databases. RL Dadbeh Rouhbakhsh, Microbiology, University of California at Davis, Davis, RL CA 95616, USA XX DR RFAM; RF01118; PK-G12rRNA. DR SILVA-LSU; U09230. XX CC On Jan 26, 1999 this sequence version replaced gi:780129. XX FH Key Location/Qualifiers FH FT source 1..6135 FT /organism="Buchnera aphidicola" FT /host="Schizaphis graminum" FT /mol_type="genomic DNA" FT /db_xref="taxon:9" FT CDS 257..1075 FT /codon_start=1 FT /transl_table=11 FT /gene="aroE" FT /product="shikimate dehydrogenase" FT /db_xref="GOA:P46240" FT /db_xref="InterPro:IPR006151" FT /db_xref="InterPro:IPR011342" FT /db_xref="InterPro:IPR013708" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:P46240" FT /protein_id="AAD09433.1" FT /translation="MCKLEKFNYALFGNPIDHSQSPKIHNFFATQTGILHIYKAINIPL FT DQFSSVVSDFFKKNIKGANVTAPFKKEAYFFSDKLTERAKIAQSVNTLKKISDKCILGD FT NTDGIGLLSDLVRLNFIKKNFSILILGAGGAVKGVLLPLLSLGCSVYILNRTILNAKIL FT VKQFNKYGKIFVFDRQNFKQQNFDLVINAMSRNTEKKNFTLILITSKRFFYDMNYSTRN FT TPFINWCSKAGGSFISNGIGMLVFQAAYSFLEWHNVLPEINYIINILNIK" FT tRNA 1220..1292 FT /product="tRNA-Glu" FT rRNA 1465..4383 FT /product="23S ribosomal RNA" FT rRNA 4480..4599 FT /product="5S ribosomal RNA" FT CDS 5603..>6135 FT /codon_start=1 FT /transl_table=11 FT /gene="cysS" FT /product="cysteinyl-tRNA synthetase" FT /db_xref="GOA:P46241" FT /db_xref="InterPro:IPR002308" FT /db_xref="InterPro:IPR009080" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR015273" FT /db_xref="InterPro:IPR015803" FT /db_xref="InterPro:IPR015804" FT /db_xref="UniProtKB/Swiss-Prot:P46241" FT /protein_id="AAD09434.1" FT /translation="MLKIFNTATSKKEIFKPIKNKKINLYVCGVTVYDFCHIGHARTFV FT VFDMIVRYLRLIGFQVKYIRNITDIDDKIILKSLKEKIDISAFTNIMIKEMNKDFSLLG FT ISPPDEEPRVTNYIIDIIKVIEKLIKNKNAYVNDHGDVIFSINSDKFYGTLSRQSLDKL FT ISGTRISIDKEKKNS" XX SQ Sequence 6135 BP; 2053 A; 925 C; 1246 G; 1911 T; 0 other; gaattcgatc ttagtctgtg tgactgcagt tgatcgatag cgtcgtataa gtgtctcatt 60 tagtataatt aagttatgta atgttttgaa agcactgtat ctgcaagtgc taatatttca 120 aatatgtctc cgtgtcttac tcgagaagat gttttaaagg actttggaaa agattttcca 180 gtattgtatg gtcatatagg aaatgaaagt catccctcta aaataattaa tattgttaat 240 ggaaaattaa ttcgttatgt gtaaacttga aaagtttaat tacgctttgt ttggaaatcc 300 tattgatcac agtcaatctc ctaaaattca taattttttt gctacacaaa caggtatttt 360 gcatatttat aaagctatta acattccatt agatcaattt tcttcagtag tttcagattt 420 ttttaaaaaa aatattaaag gtgctaatgt aacagcacct tttaaaaaag aagcgtattt 480 tttttctgat aagttaactg aaagagcgaa gattgcacaa tctgtaaata ctttaaagaa 540 aataagcgat aaatgtattt taggagataa tactgacggt ataggattat tatctgattt 600 agttagatta aattttataa aaaaaaattt ttctatatta atacttggtg caggaggtgc 660 tgtgaaaggt gttcttttgc cacttttatc tttgggatgt tcagtttaca ttttaaatcg 720 aactatttta aatgctaaaa ttttagttaa acaatttaat aaatatggaa aaatttttgt 780 ttttgataga caaaatttta aacaacaaaa ttttgattta gttatcaatg ctatgtcaag 840 aaatactgag aaaaaaaatt ttacccttat cttaattact tctaaacgtt ttttttacga 900 tatgaattat agtacacgca atacaccctt tattaattgg tgttctaaag caggaggaag 960 ctttatttct aatggaatag ggatgctggt ttttcaagca gcttattctt ttttagaatg 1020 gcacaatgta cttccagaaa taaattatat tattaatatt ttaaatataa aataattttt 1080 ttaaaaaatg tttaatattt atttttttta tatatctctt cttaatttta aagaaaatac 1140 ttgactcttt tttttcgatc tgtattattt aatgtaatac tttttaaaaa aataaatcaa 1200 aaatcttttt cataaaaaag tccccttcgt ctagaggtta ggacatcgcc ctttcacggc 1260 ggcaacaggg gttcaaatcc cctaggggac gataaataaa aaattttttt aaaaaatatt 1320 gtatactatt ttaaattctt gtgttatgat tgaaaatatt caataaacat taaaaaatat 1380 tttaactttt ttcaaagctc tttaaaaatt cggaaaacaa gtatacaaat tattttttat 1440 gtagaaaaca cctgtgggtt gtaaggttaa gcaaataagc gtacatggtg aatgccttgg 1500 cagtcagagg cgaagaagga cgtgctaatc tgcgaaaagc gacggcaagc tgatatgaag 1560 cgctataacc gtcgatttcc gaatggggaa acccgataca tttcatgtat cattattagc 1620 tgaattaaat aagctaataa agcaaaccaa gggaactgaa acatctaagt accttgagga 1680 aaagaaatca accgagattc ccttagtagt ggcgagcgaa aagggaaaag cccagaacta 1740 tcatcaattc tatattatag cagaatgatt tggaaaattc agcgatacaa ggtgatagcc 1800 ctgtatgcga aataattttt attgtgagtt cgaaaagtag agcgggacac gagaaatcct 1860 gtttgaatat ggggggacca tcctctaagg ctaaatactc ctgactgacc gatagtgaac 1920 tagtaccgta agggaaaggc gaaaagaacc ccggcgaggg gagtgaaata gaacctgaaa 1980 ccgtgtacgt acaagcagtg gaagcatgaa gaattttaaa aatgtgactg cgtacctttt 2040 gtataatggg tcagcgactt gtactctgta gcaaggttaa ccaaataggg gagccgaagg 2100 gaaaccgagt cctaaatagg cgttaagttt cagggtacag acccgaaacc cggtgatcta 2160 gccatgagca ggttgaaggt tgggtaaaac caactggagg accgaaccga ctgatgttga 2220 aaaatcagcg gatgacttgt ggctaggggt gaaaggccaa tcaaaccggg agatagctgg 2280 ttctccccga aagctattta ggtagcgcct cgtgaattca tctacggggg tagagcactg 2340 tttcggttag ggggccatcc cggcttacca atccgatgca aactccgaat accgtagaat 2400 gttatcacgg gagacacaca gcgggtgcta acgttcgttg tggaaaggga aacaacccag 2460 accgccagct aaggtcccaa agtcatagtt aagtgggaaa cgatgtggga aggcataaac 2520 agccaggatg ttggcttaga agcagccatc atttaaagaa agcgtaatag ctcactggtc 2580 aagtcggcct gcgcggaaga tgtaacgggg ctcaaattat gcaccgaagc tgcggcagta 2640 aaaatttatt ttttactggg taggggagcg ttctgtaagc caatgaagat gtattgtaaa 2700 atatgttgga ggtatcagaa gtgcgaatgc tgacatgagt aacgataaag caggtgaaaa 2760 acctgctcgc cgaaaaacta aggtttcctg tccaacgtta atcggggcag ggtgagccga 2820 cccctaaggc gaggctgtaa agcgtagtcg atggaaaaca ggttaatatt cctgtgctta 2880 attttactgc gaagggggga cgaagaaggt taggttatcc aggtgacggt aatcctggtt 2940 taaatgtgta ggtatggata attaggcaaa tccgattatc ttttttaatc tgaggcatga 3000 tgacgaatta ctaaggtaat gaagtaacta ataccacgct tccaagaaaa tcctctaagc 3060 atcaggtaag attaaatcgt accttaaacc gacacaggta gttaggtaga gaatactaag 3120 gcgcttgaga gaacccaggt gaaggaacta ggcaaaatag tgccgtaact tcgggagaag 3180 gcacgctagt tttaggtgaa aggatttgac tcctagagct gaaactagtc gaagatacca 3240 gctggctgca actgtttatt aaaaacacag cactgtgcaa acacgaaagt ggaagtatac 3300 ggtgtgacgc ctgcccggtg ccggaaggtt aatcgaagga gttaaaggaa acttgaagct 3360 ccagactgaa gccccggtaa acggcggccg taactataac ggtcctaagg tagcgaaatt 3420 ccttgtcggg taagttccga cctgcacgaa tggcgtaatg atggccaggc tgtctccacc 3480 tgggactcag tgaaattgaa attgctgtga agatgcagta tatccgcggc aagacggaaa 3540 gaccccgtga acctttacta tagcttgaca ctgaattctg aattttaacg tgtaggatag 3600 gtgggaggct atgaagttaa aacgctagtt ttaatggagc caaacttgaa ataccaccct 3660 ttacaattcg gtgttctaac ctagtgccgt aatccggtgc agagacagtg tctggtgggt 3720 agtttgactg gggcggtctc ctcccaaaga gtaacggagg agtacgaaga ttggctaatc 3780 acggtcggac atcgtgaggt tagtgcaaag gcataagcca gtttgactgt gagcgtgatg 3840 acgcgagcag gtgcgaaagc aggtcttagt gatccggtgg ttctgtatgg aagggccatc 3900 gctcaacgga taaaaggtac tccggggata acaggctgat accgcccaag agttcatatc 3960 gacggcggtg tttggcacct cgatgtcggc tcatcacatc ctggggctga agcaggtccc 4020 aagggtatgg ctgttcgcca ttaaagtggt acagcgagct gggtttagaa cgtcgtgaga 4080 cagttcggtc cctatctgcc gtggacgttg gaagattgag gggggctgct tctagtagca 4140 gaggaccgaa gtggacgcat cactggtgtt cgggttgtca tgccaatggc attgcccggt 4200 agctatatcg gaaaagataa gtgctgaacg catataagca cgaaacttgc cccaagatta 4260 atcttccctg aaacagaaat gtttactgaa gggacgttga agactacacg ttaataggct 4320 agatgtgtaa gcatagcaat atgttgagct aactagtact aatgacccga gaggcttaac 4380 cttacaacac cagaggtgtt ttttataaaa aataaaaaat cttgttttac tgaatttatt 4440 gttgtattaa tatatatata ttataatagc actaaaaaat gcctggtaaa aatagtgtag 4500 tggtaccacc tgaatccatt ccgaactcag aagtgaaacg ctacaacgcc aatggtagta 4560 cggggtctcc ccgtgtgaga gtaggtatca gccaggcaaa tacaaaaaag cccgaaaatt 4620 ttcgggtttt tttgtatttg aaataaaatt gtattaaata tttgttttaa taaataatgt 4680 taatattaaa aaaatagctt aatttttttc aaataaatat aaatattttt ttaaaataaa 4740 ttgcttgcta gctaacaata gatttacatg ttaatctatt aaaaaaattt ttattatttt 4800 tgatttttaa ttttttatga tgaaaatcat ttataatcat aaatgacact tttttcaatt 4860 tagtatattt ttttcatgtg aaggtaatat agatgtccaa gattaaaggt aatgttaagt 4920 ggtttaatga gtctaaaggg tttggtttta ttactccaga agatggaagt aaagatgtat 4980 ttgttcactt ctcagctata caaagtaatg gatttaaaac tctagcagaa ggtcaaagtg 5040 ttgaatttga aattactgag ggagcaaagg ggccatctgc tgctaatgtt attagtctat 5100 agattttttt ttaaataaaa aataaaaatc ttttttagta cgcctcttta tcgagctgta 5160 ctatttagga tcttatattt tttatagaac cattctcacc atatttattt tactaattca 5220 tggtacaatg tttcaatctg ttcaaaattt tttgcacata ttgtaatgga aacagaaaga 5280 taattacctc tgttacttga ttttacttga ggtgtataat ctccaggaat ctgaatttga 5340 atgactttta ttatttgatc aacaagttcg ggttgtgcta aaccaatgat cttataagta 5400 aaaaaacaag ggaattttaa catttctcgt aattttgtct tcattaatta atcctggtgt 5460 tatttttaat gaatttttta atttaaaaaa aattaattaa tttgttatat ttttatataa 5520 acatatcatt taaaattttt tataaaaaaa tagatattaa tatatctaat tagtttaaca 5580 tattgatatt atagagaaat ttatgttaaa aatttttaat accgcaacat ctaaaaaaga 5640 aatttttaaa cctattaaaa acaaaaaaat taatttatat gtttgtggag ttactgtata 5700 tgatttttgt catattggtc acgcacgtac tttcgttgtt tttgacatga tagtgcgtta 5760 tttacgatta ataggatttc aagttaaata tattcgtaat attacagata ttgatgataa 5820 aattatttta aaatcattaa aagaaaaaat tgatattagt gcttttacaa atattatgat 5880 aaaagaaatg aataaagatt tttctttatt aggcatttcc cctcctgatg aagaacctcg 5940 cgttactaat tatattattg atataattaa agttattgaa aaactaatta aaaataaaaa 6000 cgcctatgtt aatgatcatg gagatgtaat tttctcaata aatagtgata aattttacgg 6060 aactttatct cgtcaatctt tagataaatt aatatctggt acacgtattt ctatagataa 6120 agaaaaaaag aattc 6135 // |
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