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EBI DbfetchID U06949; SV 1; linear; genomic DNA; STD; PRO; 3516 BP. XX AC U06949; XX DT 28-SEP-1994 (Rel. 41, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Vibrio parahaemolyticus BB22 RNase T (rnt) gene and flagellar motor DE component (motY) gene, complete cds. XX KW . XX OS Vibrio parahaemolyticus OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; OC Vibrio. XX RN [1] RP 1-3516 RX PUBMED; 8021208. RA McCarter L.L.; RT "MotY, a component of the sodium-type flagellar motor"; RL J. Bacteriol. 176(14):4219-4225(1994). XX RN [2] RP 1-3516 RA McCarter L.L.; RT ; RL Submitted (18-FEB-1994) to the EMBL/GenBank/DDBJ databases. RL Linda L. McCarter, Immunology, The Scripps Research Institute, 10666 N. RL Torrey Pines Rd., La Jolla, CA 92037, USA XX FH Key Location/Qualifiers FH FT source 1..3516 FT /organism="Vibrio parahaemolyticus" FT /strain="BB22" FT /mol_type="genomic DNA" FT /clone_lib="pLAFRII" FT /clone="pLM1717" FT /db_xref="taxon:670" FT CDS complement(<1..420) FT /codon_start=1 FT /transl_table=11 FT /product="ORF3" FT /db_xref="GOA:P46231" FT /db_xref="InterPro:IPR018461" FT /db_xref="UniProtKB/Swiss-Prot:P46231" FT /protein_id="AAA21571.1" FT /translation="MNPVVISVCVMLVLALMRVNVVVALTFSAIVGGLVAGMSLGDTVA FT AFESGLGGGATIALSYAMLGTFAVAISKSGITDLLAKSVIKRLNGKESAASTTGLKYAV FT LVALVLVTMSSQNVIPVHIAFIPILIPPLLGVFAKL" FT CDS complement(449..1093) FT /codon_start=1 FT /transl_table=11 FT /gene="rnt" FT /product="RNase T" FT /db_xref="GOA:P46232" FT /db_xref="InterPro:IPR005987" FT /db_xref="UniProtKB/Swiss-Prot:P46232" FT /protein_id="AAA21572.1" FT /translation="MTIENEALTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLR FT MDEEGVLHPASTIHFHIEPFEGANLEKEALEFNGIRDPFSPLRGAISEQEALKEIYKLI FT RKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKLKRVPFHPFATFDTATLSGLAYGQT FT VLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIVNKWKALGGWPLVDEE" FT CDS 1373..1441 FT /codon_start=1 FT /transl_table=11 FT /note="pre-motY ORF" FT /db_xref="UniProtKB/TrEMBL:Q56701" FT /protein_id="AAA21573.1" FT /translation="MTIVVVLMIPINGKRLPFERLY" FT CDS 1442..2323 FT /codon_start=1 FT /transl_table=11 FT /gene="motY" FT /product="MotY" FT /function="flagellar motor component" FT /db_xref="GOA:P46233" FT /db_xref="InterPro:IPR006665" FT /db_xref="UniProtKB/Swiss-Prot:P46233" FT /protein_id="AAA21574.1" FT /translation="MNKWLITSGVMLSLLSANSYAVMGKRYVATPQQSQWEMVVNTPLE FT CQLVHPIPSFGDAVFSSRASKKINLDFELKMRRPMGETRNVSLISMPPPWRPGEHADRI FT TNLKFFKQFDGYVGGQTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQSKYN FT AFSDCIANLLKYSFEDIAFTILHYERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVAT FT YTDSTDGKSESQSLSERRAESLRTYFESLGLPEDRIQVQGYGKRRPIADNGTPIGKDKN FT RRVVISLGRTQV" FT CDS complement(2535..2969) FT /codon_start=1 FT /transl_table=11 FT /product="ORF2" FT /db_xref="UniProtKB/Swiss-Prot:P46234" FT /protein_id="AAA21575.1" FT /translation="MISEWEKHTLLADTALQLDDPVRSILHYQQDLSLSEDISECVEIE FT ADERLLISVISCHNLAQFWRWAGDTEYELKYLQLASEKVLTLIPQCPNQNCASFIDSIG FT CCTKALIDFMKRHPNPAIAKQVEKIDTATNCEVIAKFRLN" FT CDS complement(3113..>3514) FT /codon_start=1 FT /transl_table=11 FT /product="ORF1" FT /db_xref="GOA:P46235" FT /db_xref="HSSP:1F9Z" FT /db_xref="InterPro:IPR018146" FT /db_xref="UniProtKB/Swiss-Prot:P46235" FT /protein_id="AAA21576.1" FT /translation="ILHTMLRVGDLDKSIKFYTEVMGMQLLRTNENKEYEYTLAFVGYG FT DESQGAVIELTYNWGKTEYDLGTAFGHIAIGVDDIYATCDAIKAAGGNVTREAGPVKGG FT TTHIAFVKDPDGYMIELIQNKQASAGLEG" XX SQ Sequence 3516 BP; 973 A; 728 C; 808 G; 1007 T; 0 other; aagcttcgca aatacgccca aaagaggtgg aatcaaaatt ggaataaagg cgatatgaac 60 aggaattacg ttctgagaag acatggttac gagcactaac gccactaata cagcgtattt 120 aaggccagta gtcgatgctg cactttcttt gccgtttagg cgtttaatca cgctttttgc 180 gagcaggtca gtgataccag atttagaaat ggcaacggcg aatgtgccaa gcatagcgta 240 gctaagtgca atcgttgcac cgccacctaa gccactttcg aaggccgcta cggtatcgcc 300 taagctcatt cccgcaacaa ggccaccaac aatggcacta aacgtgaggg cgaccaccac 360 gtttacacgc atcaatgcta acacgagcat gacgcaaact gagataacga caggattcat 420 actattccca atatgttgtg tttacttatt attcttcgtc aacaagcggc caaccgccga 480 gggccttcca tttgttcacg atgccacaga ataactctgc agttttttgt gtatcgtaaa 540 gggcagagtg cgcttcacga ttgtcgaatt ccatccctgc cgttttgcat gctttagcga 600 gaacagtttg accataagca aggccgctta atgtggcggt gtcaaaagta gcaaagggat 660 gaaaagggac tctttttaac ttgcagcgtt cgtttgctgc attaacaaaa cttaagtcga 720 aagcggcgtt atgtgcaacc attattgcac gtgagcaatc agatgctttt tgttctttac 780 gaatcagctt ataaatttct tttaatgctt cttgttcaga aattgcaccg cgtaacgggc 840 tgaaagggtc acgaatacca ttaaactcaa gcgcttcttt ctctaaattc gcgccttcaa 900 aaggttcaat atgaaaatga atagtggagg ctggatgcag aacgccttct tcatccatac 960 gaagggtgac ggcgcagatt tctaaaagtg catcggtttg agcattgaaa ccagcggtct 1020 caacgtcaac aaccactggg aaataaccac gaaaacgctt tttcagggtt agggcttcat 1080 tttctattgt catgttggct tatttttgtg tgacgaaggc tgcattattg cagattatat 1140 cgatgagaaa aaccgcaatt tcggagaaaa acggaattct attttccatc taatcaataa 1200 gctcgcgcgg cgcttgagat aaagagcaca agtaccgatt tttgtatcac gcaggtgcat 1260 atttaactcg ggaatagata cgatttagcg gcatttgtgg gagaaatcag agctagaatc 1320 gttcattttg atacactcac caagaaagtt agagcattgg cgggattttt gcatgacaat 1380 cgttgtagtt ttaatgattc caattaacgg caaaagactg ccgtttgaga gattgtacta 1440 gatgaataaa tggctgataa ccagtggtgt catgctttca ctgcttagcg caaacagtta 1500 cgcggtgatg ggcaagcgtt atgtcgctac tccgcagcaa tcacaatggg aaatggtggt 1560 aaatacccct ttggaatgtc agcttgtgca tccaattcca agctttggtg atgcggtgtt 1620 ttcgtcgcgt gcgagtaaaa aaatcaattt ggattttgaa cttaaaatgc gtcgccctat 1680 gggtgaaaca cgcaatgtca gcttgatctc aatgccaccg ccttggcgac cgggtgagca 1740 cgccgaccgc atcacgaatc tgaagttttt caaacagttt gatgggtatg tcggtggtca 1800 aactgcttgg ggtattttat ctgaattaga gaaaggccgt tacccaacat ttagctatca 1860 agattggcaa agtcgcgatc aacgaattga agtcgcgttg tcatccgtat tattccaaag 1920 taagtacaat gcgtttagtg attgtatcgc caacttgttg aagtacagtt ttgaagatat 1980 tgcgtttacg attttgcatt acgaacgtca gggcgaccaa ctgacgaaag cgtctaaaaa 2040 gcgtcttgct cagattgctg attatgtgcg tcacaatcaa gatatcgacc tcgtgctggt 2100 ggcgacatac actgattcga ccgatggtaa gagcgaaagc cagagcctat cggagcgacg 2160 agcagagtct ctacgtactt actttgaatc actgggtttg ccagaggatc gtattcaagt 2220 gcaaggttat ggcaagcgcc gacctattgc tgataatggc acgccgattg gtaaagacaa 2280 gaaccgtcgt gtagtcatct ctttaggtcg aactcaagtt taggccgtag taaagcatgc 2340 ttacataaaa aacgccggag aaataatctc cggcgttttt gtatattgac gttgttagct 2400 tgtaaattaa gtaagagcat cgaaaacgct caagtcttac tttgtatatg ttagtgagta 2460 tctacttact gtcgaataac tttcgttgag tcatttccaa gtgatgaggt cagcttattt 2520 tcgacctttg ctcattaatt taaacgaaac ttagcgatca cttcgcaatt ggttgcggta 2580 tcgatctttt ctacttgttt cgcaattgct gggtttggat gacgcttcat aaaatcgata 2640 agtgcttttg tgcaacagcc gatggagtca ataaagctcg cgcaattctg gtttgggcat 2700 tggggaataa gtgtgagcac tttttcagat gccagctgaa gatatttgag ttcgtattcg 2760 gtatcaccag cccagcgcca aaattgtgcg aggttgtgac aagagattac agaaatcaaa 2820 aggcgctcgt ctgcttcaat ttccacgcat tcactaatgt cttcacttaa gcttaaatct 2880 tgttgatagt gaagaatgct gcgtacagga tcatctagtt gcagggcagt atcggctagg 2940 agtgtgtgtt tttcccattc actgatcatt atcgttgttc cacgtatcga atttgggatg 3000 aatctaaacg ataattatta tcaagtaaag tggtttgttt acaaaaggac aggcagatcg 3060 cagacctgcc tgtaattgag gttcgacttg caatgcaagt gaatcagatg aactagcctt 3120 ctagacccgc agaagcttgt ttgttctgga taagctcaat catgtaacca tcaggatctt 3180 ttacaaaggc gatgtgtgtt gtaccacctt tcactgggcc cgcttcgcga gtaacgttac 3240 cgcctgcggc tttgattgca tcacatgttg cgtagatgtc gtctacgcca attgcaatat 3300 gaccaaatgc tgtgcctagg tcatattctg tcttacccca gttgtaagtc agttcaatca 3360 cggcaccttg ggattcatca ccgtaaccaa caaaggcaag tgtgtattcg tactctttgt 3420 tttcgttggt acgaagcaac tgcatgccca tgacttcagt ataaaatttg attgatttgt 3480 ctagatcacc tacgcgaagc atagtgtgta gaattc 3516 // |
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