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EBI DbfetchID U04957; SV 1; linear; genomic DNA; STD; PRO; 3878 BP. XX AC U04957; XX DT 29-JAN-1994 (Rel. 38, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Bacteroides ovatus xylanase precursor gene and xylosidase/arabinosidase DE gene, complete cds. XX KW . XX OS Bacteroides ovatus OC Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; OC Bacteroides. XX RN [1] RP 1-3878 RX DOI; 10.1016/0304-4165(95)00051-C RX PUBMED; 7766665. RA Whitehead T.R.; RT "Nucleotide sequences of xylan-inducible xylanase and RT xylosidase/arabinosidase genes from Bacteroides ovatus V975"; RL Biochim. Biophys. Acta, Gene Struct. Expr. 1244(1):239-241(1995). XX RN [2] RP 1-3878 RA Whitehead T.R.; RT ; RL Submitted (10-JAN-1994) to the EMBL/GenBank/DDBJ databases. RL Terence R. Whitehead, Agricultural Research Service, USDA, Midwest Area RL National Center for Agricultural Utilization Research, 1815 North RL University Street, Peoria, IL 61604, USA XX FH Key Location/Qualifiers FH FT source 1..3878 FT /organism="Bacteroides ovatus" FT /strain="V975" FT /mol_type="genomic DNA" FT /db_xref="taxon:28116" FT CDS <1..1127 FT /codon_start=3 FT /transl_table=11 FT /product="ORF protein" FT /note="ORF" FT /db_xref="UniProtKB/TrEMBL:P70939" FT /protein_id="AAB08022.1" FT /translation="IPLTGFAILCFWNGFSGSLFYAYFTYVGLSMCYTLINVPYGALNA FT SLTRDTNEITVLTSVRMFLANLGGLAVAYGIPILVKVLSPDGKINTTASANAWFITMTI FT YAVIGLALLMFCFNQTKERVVMDQEETSKVKVSDLWVEFCRNKPLRILAFFFITAFAMM FT AIGNSAGSYYMIYNVRAPEMLPYFMALGSIPAFIFMPMVPAIKRAIGKKQMFYVFLSVA FT ILGMALLYIISVVPVLKTQIWLVFVAQFIKSTGVIIATGYMWALVPEVISYGEYTHGKR FT ISGIVNALTGIFYKAGMALGGVVPGLVMAFVGFDQTNEVSQSPFAEQGILWLVAVIPAL FT LLLVAMFIISKYELEDNVIDNINEEIESRCKKGE" FT CDS 1167..2297 FT /codon_start=1 FT /transl_table=11 FT /product="xylanase precursor" FT /note="cell associated protein; xylan-inducible operon" FT /db_xref="GOA:P49942" FT /db_xref="HSSP:1HIZ" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/Swiss-Prot:P49942" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB08023.1" FT /translation="MKLKRIILLLLTVMFSFSYGEVFAKDGSSLKKALKNKFLIGVSVN FT THQSSGKDVAAVEIVKKNFNSIVAENCMKSSVIHPKENKYNFAQADEFVSFGESNQMAI FT IGHCLIWHSQLAPWFCVDKDGNNVSPEVLKKRMKDHITTIVKRYKGRIKGWDVVNEAIE FT DNGAYRKTKFYEILGEEYIPLAFQYAHEADPDAELYYNDYSMAQPGRREAVVKMVNDLK FT KRGIRIDAIGMQGHIGMDYPKISEFEKSMLAFAGTGVKIMITELDLTVIPSPNPNVGAE FT VSASFEYKKEMNPYPDGLPEEVSKAWTERMNDFFRLFLKHHNLITRVTLWGVADQNSWR FT NDWPMRGRTDYPLLFDRNYQPKPVVGLIIKEAEKTK" FT sig_peptide 1167..1236 FT /note="putative signal peptide for xylanase" FT mat_peptide 1237..2294 FT /product="xylanase" FT misc_feature 1938..1970 FT /note="cellulase family F conserved active site amino acid FT sequence motif" FT CDS 2324..3301 FT /codon_start=1 FT /transl_table=11 FT /product="xylosidase/arabinosidase" FT /note="cell associated protein; bifunctional protein" FT /db_xref="GOA:P49943" FT /db_xref="InterPro:IPR006710" FT /db_xref="UniProtKB/Swiss-Prot:P49943" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB08024.1" FT /translation="MKTEKRYLVPGDYMADPAVHVFDGKLYIYPSHDWESGIAENDNGD FT HFNMKDYHVYSMDDVMNGEIKDHGVVLSTEDIPWAGRQLWDCDVVCKDGKYYMYFPLKD FT QNDIFRIGVAVSDKPYGPFIPEANPMKGSYSIDPAVWDDGDGNYYIYFGGLWGGQLQRY FT RNNKALESAILPEGEEEAIPSRVARLSEDMMEFAEEPRAVVILDEDGKPLTAGDTERRF FT FEASWMHKYNGKYYFSYSTGDTHLLCYATGDNPYGPFTYQGVILTPVVGWTTHHAIVEF FT KGKWYLFHHDCVPSEGKTWLRSLKVCELQYDADGRIITIEGKDE" XX SQ Sequence 3878 BP; 1105 A; 671 C; 932 G; 1170 T; 0 other; gaattccgct gactggtttt gctattcttt gtttttggaa cggcttttcg ggttcactgt 60 tctatgccta tttcacttac gttggattat ccatgtgtta tacattgatt aatgtgcctt 120 atggagcact gaatgcgtca cttacccgcg atacgaatga aatcacggtg ttgacgtcag 180 tgcgtatgtt tcttgccaat ttgggtggtt tggctgtggc atacggtatt ccgatactgg 240 tgaaggtgtt gtctcccgat ggtaaaatca atactactgc atctgctaac gcatggttta 300 ttacgatgac tatttatgct gttatcggat tggcgttatt gatgttctgc tttaaccaga 360 cgaaggagcg tgtggttatg gatcaggagg agacatctaa agtaaaagtg tccgacttgt 420 gggtagaatt ttgtagaaat aaacctttgc gtattttggc gttctttttc attactgctt 480 ttgcaatgat ggcgattggt aattctgccg gttcatatta tatgatttat aatgtacgtg 540 caccggagat gttaccttat ttcatggcct tgggctcgat acccgcattc attttcatgc 600 cgatggtacc tgccattaaa cgtgccattg gaaaaaagca aatgttttat gtattccttt 660 cagtcgctat attgggtatg gcattgctgt atattatttc tgtggttccg gtactcaaaa 720 cgcagatatg gttggtcttt gtggcgcagt tcataaaatc gacgggagtc attattgcga 780 cagggtatat gtgggctttg gttcccgaag taatttcgta tggcgaatat actcatggta 840 aacgtatttc gggtatagtc aatgctttga ctggtatttt ctataaagcg ggaatggctc 900 ttggaggagt tgtaccggga cttgttatgg cttttgtcgg attcgaccag acaaatgaag 960 tgtcacaatc gccttttgcc gaacagggaa tactgtggct cgtagccgtt attccggcgt 1020 tgttgctttt ggtcgctatg ttcattattt ctaaatatga attggaagat aatgtgattg 1080 acaatataaa tgaggagata gaatcgcgct gtaaaaaagg cgaatagata agatagtaga 1140 atgtttatta ctcaaaaata taacgtatga aactcaaacg aataattctg ttgttattga 1200 cagtgatgtt ttctttttct tatggagaag tttttgcgaa agatggaagt tcgctgaaaa 1260 aggctttgaa aaacaagttt ttgattggcg tgtcagtgaa cacacatcaa agttccggta 1320 aggatgtcgc agctgttgaa attgtaaaga agaattttaa ttccatcgtg gcggaaaact 1380 gcatgaagtc ttctgtcatt catccgaaag aaaataagta taattttgcg caggcagatg 1440 aatttgtcag ttttggtgag agcaatcaaa tggctatcat tggtcactgc ctgatttggc 1500 attcacaatt ggctccttgg ttttgcgtag ataaggacgg gaataatgtt tctccggaag 1560 tcctgaagaa acggatgaaa gaccatatca ctaccatcgt gaaacgctat aaaggccgta 1620 tcaaaggctg ggatgtagta aatgaagcga ttgaagataa tggagcatat cgcaagacaa 1680 agttttatga gattctgggg gaagaatata tcccattggc tttccagtat gcacacgagg 1740 ctgatccgga tgccgaactt tactacaatg actactcaat ggcccaaccg ggcagaagag 1800 aagccgtcgt gaaaatggtg aacgatttga aaaaacgtgg aatccgtatt gatgccatag 1860 gtatgcaagg acacatcggc atggactacc cgaaaatcag tgaatttgag aagagtatgc 1920 tggcctttgc cggaacagga gtgaagataa tgataacaga actggatttg acggtgatac 1980 catcaccgaa tcccaatgta ggtgcagaag tttccgcttc ctttgaatat aagaaagaga 2040 tgaatcctta tccggatgga ttaccggaag aggtatcgaa agcatggact gaaagaatga 2100 atgacttttt ccgtctgttc ctgaaacatc ataaccttat caccagggtt actctttggg 2160 gagtagccga tcagaactct tggcgtaatg actggccgat gagaggccgc acggattatc 2220 cgttactttt tgatcgcaat tatcagccga agccggtagt cggcctgatt atcaaagagg 2280 ctgaaaaaac aaaataagtt tctaacagaa aaaccgaaaa agcatgaaaa cagaaaaaag 2340 atatttagtt cccggtgatt atatggctga ccctgccgta catgtatttg atggcaaact 2400 gtatatttat ccctcgcacg attgggaaag tggtattgct gaaaatgata atggcgatca 2460 tttcaatatg aaagattatc acgtgtattc tatggatgat gtgatgaacg gtgaaataaa 2520 agatcatgga gtggtgcttt ccacagagga tattccttgg gcgggccgtc aactatggga 2580 ttgtgatgtg gtttgtaaag atggtaagta ctatatgtat tttccattga aagatcagaa 2640 tgatatattt cgtatcgggg tagctgtgag tgataaacct tatggtcctt ttataccgga 2700 agctaatccg atgaaaggaa gttacagcat cgatccggct gtatgggatg acggagatgg 2760 taactattat atatatttcg gtggattgtg gggtggacaa cttcaacgtt accgtaataa 2820 taaagccttg gaatctgcca ttttgccgga aggagaggag gaggcaatcc cgtcgcgtgt 2880 tgctcgtttg agtgaagaca tgatggagtt tgccgaagaa ccccgtgcag tggtaattct 2940 ggatgaagac ggtaagccat tgacagcagg ggatacggaa cgccgtttct tcgaagcttc 3000 gtggatgcat aaatataatg gtaaatacta tttttcctat tctacgggag acactcattt 3060 gctctgctat gcaacaggtg ataaccctta tggtccgttt acttatcagg gagtcattct 3120 gactccggtg gtaggatgga ctactcacca tgctattgta gagtttaaag gtaagtggta 3180 tctgtttcat cacgattgtg taccatcaga gggaaagact tggctccgta gcttgaaagt 3240 ctgtgaactt cagtatgatg cagacgggcg aatcattact atcgagggaa aagatgaata 3300 ataggataca ttaaaacaac cgcctctatt tgaaaaacat acctactttt accagaatat 3360 taggtaatag ggatttttca ggtagaggcg gttattatta actatgaatg cttaatttac 3420 ttatgctatc atactgtaaa ttaattgtga taacatactt tgtactatga gaaatatatt 3480 tgcattgaca ttcactttgt ttttttgctt ttcttctatt tgggcagaag atggaagtgc 3540 cttgtggctt cgttatgcat cgggagcgaa agcggaaatt accagcaaga aacaatcacc 3600 tacattacgt attgcggttt ccgaattaca gaacttctgg cagggaggaa tcccggttac 3660 tttggaggtc cggaacaata aagaacttcg tgcacttgga aatgagggat atacgattca 3720 gacctccaaa ggtggcaatc aaataacgat agcttcttcc ggtgaacaag gagtacttta 3780 tggaacgtat catttactcc gtctgcaagc taccggacaa ctaccggaat cagctttgca 3840 atccctcaat ttctccgaac gacctgatta tcgaattc 3878 // |
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