spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   U03059; SV 1; linear; unassigned DNA; STD; INV; 1562 BP.
XX
AC   U03059;
XX
DT   22-JAN-1994 (Rel. 38, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Caenorhabditis elegans Bristol (N2) ornithine decarboxylase (odc-1) gene,
DE   complete cds.
XX
KW   .
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1562
RX   PUBMED; 7498733.
RA   Macrae M., Plasterk R.H., Coffino P.;
RT   "The ornithine decarboxylase gene of Caenorhabditis elegans: cloning,
RT   mapping and mutagenesis";
RL   Genetics 140(2):517-525(1995).
XX
RN   [2]
RP   1-1562
RA   Coffino P.;
RT   ;
RL   Submitted (01-NOV-1993) to the EMBL/GenBank/DDBJ databases.
RL   Philip Coffino, Microbiology, University of California at San Francisco,
RL   Third Avenue and Parnassus Avenue, San Francisco, CA 94143, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1562
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="V"
FT                   /strain="Bristol (N2)"
FT                   /mol_type="unassigned DNA"
FT                   /sex="hermaphrodite"
FT                   /clone_lib="prepared in lab of Cynthia Kenyon by Sasha Kamb
FT                   in lambda vector 2001"
FT                   /clone="ceodc"
FT                   /db_xref="taxon:6239"
FT   CDS             join(145..599,657..957,1005..1517)
FT                   /codon_start=1
FT                   /gene="odc-1"
FT                   /product="ornithine decarboxylase"
FT                   /EC_number="4.1.1.17"
FT                   /db_xref="GOA:P41931"
FT                   /db_xref="InterPro:IPR000183"
FT                   /db_xref="InterPro:IPR002433"
FT                   /db_xref="InterPro:IPR009006"
FT                   /db_xref="UniProtKB/Swiss-Prot:P41931"
FT                   /protein_id="AAA88795.1"
FT                   /translation="MISQFEIIGDNKIGVLPKQVDQLQMCRDIAASKDLQENDSSFMLV
FT                   DLDKIIERFQLWKRELPMIEPFYAVKCNTDLVLIRILASLGCGFDCASKDEIDIVMGTG
FT                   VSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILRIAVSDPT
FT                   ATCPLNLKFGADPIIAAPQLLKTASEEGINVVGISFHVGSGCNDASAYRNALQHAKNLC
FT                   EIGEGLGFKMDIIDMGGGFPGAEHHNPFEKIAETIRDALDEFFPDTNKRLYREPGRFFA
FT                   AGPFSLVANIIHATEVPASKITKDPKDCADHGYMYYINDGVYGSFNCILFDHAHPIGSP
FT                   LFDTDRNEKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYTLAAATTFNGF
FT                   SKPVPMYVMSEEMWESIRDSTHV"
FT   intron          600..656
FT                   /gene="odc-1"
FT   intron          958..1004
FT                   /gene="odc-1"
XX
SQ   Sequence 1562 BP; 422 A; 342 C; 342 G; 456 T; 0 other;
     cggcttccgg cttacatccc cacagatatc gacttgcgcg gaatcgtcgt cgtatctgcc        60
     gtctgctaca agtacatcta cgatcctttg cgtgcaggag cgcctccttg gagctgagat       120
     cccccaactc taataacttg aaaaatgatt tctcaattcg aaattattgg tgacaacaag       180
     attggcgtgc ttccaaagca agttgatcaa ctccaaatgt gccgtgacat tgctgccagc       240
     aaggatttgc aagaaaatga ctcttctttc atgctcgttg accttgataa gattatcgag       300
     agattccagc tttggaagag agagctcccg atgattgagc cattttatgc agtcaagtgc       360
     aacactgatt tggttcttat tcgcattctt gcctctctgg gatgtggatt cgattgtgct       420
     agcaaagatg aaatcgatat tgttatgggg accggtgttt ctgcggaacg tatcatctat       480
     gccaacccat gcaaaacacg cagttttatt gctcacgcaa tggaccgtga tgtcaaaatg       540
     atgacttttg ataacccgga ggaacttctt aaaattgcca agcttcatcc aaatgctgag       600
     taagtttaaa cataaattct tgattggaaa agttaaatta ttttctaaat tttcagaatg       660
     atcctccgca ttgctgtatc tgacccaact gctacgtgcc cactcaattt gaagtttgga       720
     gccgacccaa ttattgctgc accacaactt cttaagacgg cttccgaaga gggaattaat       780
     gttgttggga tttctttcca cgttggatcg ggatgcaacg acgcatctgc ctacaggaat       840
     gctcttcagc atgccaagaa cttgtgtgag attggagaag ggctcggatt caagatggat       900
     attattgata tgggtggtgg atttccagga gccgaacatc ataacccatt cgagaaggta       960
     aattttaaaa ctactaagtt ctaatgtaat taattttttt tcagattgcc gagacaattc      1020
     gtgatgctct tgatgagttc tttccagaca ccaacaagcg cctgtatcgt gaaccaggaa      1080
     gatttttcgc agccggtcca ttttctcttg ttgcaaacat cattcatgcc accgaggttc      1140
     ctgcttccaa aatcacaaag gatccaaaag actgcgctga tcatggatac atgtactaca      1200
     tcaacgacgg agtctacgga tcgttcaact gcatcctctt cgatcatgct catccaatcg      1260
     gatccccgct ttttgacact gatcgcaacg agaagttcat gtcaacaatc tgggggccaa      1320
     cttgcgacag tctagatctt gtcgaggata agaagttgat gccaaagatg aatgttggag      1380
     aatggctcta ctatccggac atgggagcgt acactcttgc cgctgccacc acgttcaatg      1440
     gattttcgaa gcctgtgccg atgtatgtga tgagcgagga aatgtgggag agcattcgtg      1500
     actcaactca tgtttgattc ttgtctaaat tattgtgtcg gaaaataaat attcttttgt      1560
     ta                                                                     1562
//
spacer
spacer