 |
|
EBI DbfetchID U02878; SV 1; linear; unassigned DNA; STD; PRO; 6106 BP. XX AC U02878; M81312; M95860; XX DT 15-DEC-1993 (Rel. 38, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Rickettsia prowazekii Madrid E transcription elongation factor (greA), DNA DE primase (dnaG), and sigma factor (rpoD) genes, complete cds. XX KW . XX OS Rickettsia prowazekii OC Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; OC Rickettsiaceae; Rickettsieae; Rickettsia; typhus group. XX RN [1] RP 1-6106 RX PUBMED; 9335295. RA Shaw E.I., Marks G.L., Winkler H.H., Wood D.O.; RT "Transcriptional characterization of the Rickettsia prowazekii major RT macromolecular synthesis operon"; RL J. Bacteriol. 179(20):6448-6452(1997). XX RN [2] RP 1-6106 RA Wood D.O.; RT ; RL Submitted (25-OCT-1993) to the EMBL/GenBank/DDBJ databases. RL Wood D.O., University of South Alabama College of Medicine, Microbiology RL and Immunology, Mobile, AL 36688-0002, USA XX DR GOA; P51995. DR UniProtKB/Swiss-Prot; P51995; PNTAB_RICPR. XX CC On Dec 15, 1993 this sequence version replaced gi:152475 gi:152495. XX FH Key Location/Qualifiers FH FT source 1..6106 FT /organism="Rickettsia prowazekii" FT /strain="Madrid E" FT /mol_type="unassigned DNA" FT /db_xref="taxon:782" FT CDS <1..512 FT /codon_start=3 FT /transl_table=11 FT /note="putative coding region" FT /db_xref="GOA:P41077" FT /db_xref="HSSP:1L7D" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:P41077" FT /protein_id="AAB81400.1" FT /translation="AKFVSPELQEDLEEESGYASESSADYKAKQEKFLAKIIKGYNIVI FT TTAQIPGKKAPMLVTDKMIESMMYGSVIVDISTSTGGNVEGSEPDKIVTRHGVTIIGLL FT NLASKIASDSSKLYSKNLYNFLTYALQDGQFNMDDELVRDMLITKDGKIVNYIIREKYE FT SITDNG" FT gene complement(958..1446) FT /gene="greA" FT CDS complement(958..1446) FT /codon_start=1 FT /transl_table=11 FT /gene="greA" FT /product="GreA" FT /function="transcription elongation factor" FT /db_xref="GOA:P27640" FT /db_xref="HSSP:1GRJ" FT /db_xref="InterPro:IPR018151" FT /db_xref="UniProtKB/Swiss-Prot:P27640" FT /protein_id="AAB81401.1" FT /translation="MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSE FT NAEYEAAREKQAFIEGRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVT FT YIIVGEYEADITKKRVSIASPIAKALIGKSVGDFVEVTTPKGLKSYEVVTVEYKELDL" FT CDS 1717..2331 FT /codon_start=1 FT /transl_table=11 FT /product="protein of unknown function" FT /db_xref="GOA:P41078" FT /db_xref="InterPro:IPR000374" FT /db_xref="UniProtKB/Swiss-Prot:P41078" FT /protein_id="AAB81402.1" FT /translation="MKTEDFDFEKKRKIFHISAIIFPMFYLFVPRIAIALLLFIITSIT FT LYLDVIRHNNAKIRKFVTRFFSKIIRLKENNGTFALSGISFMMLGFFLTSILFPKNLVI FT CSWLILIISDCLAALVGIKIGSSLSNGKSIAGSFTFFVSALFISILVYFYLGYNTSFVI FT IIISCIGATAVEFYSKYLRINDNLSIPLSYCLSTTIFPYIL" FT gene 2336..4117 FT /gene="dnaG" FT CDS 2336..4117 FT /codon_start=1 FT /transl_table=11 FT /gene="dnaG" FT /product="DNA primase" FT /db_xref="GOA:P30103" FT /db_xref="HSSP:1DD9" FT /db_xref="InterPro:IPR002694" FT /db_xref="UniProtKB/Swiss-Prot:P30103" FT /protein_id="AAB81403.1" FT /translation="MRVTQEFYEFLRNRINISDVVRQKLALTRKSSNYVGLCPFHQEKT FT PSFTVSDSKRFFYCFGCKASGDVIKFTSNISGLSYNESAIKLANDYGIEIPKLTVKQKE FT FYEESDNILNILELANKFFRTQLTPEILNYLYKRNITETTIKEFSIGFAPRNNKFEKFF FT LDKKIDITKLGQAGLIGKCKNGKIYNLFSNRITIPIRNIYNKIVGFGGRVLGNELPKYL FT NSFETIVFQKSDILYGEHKAISSSYKKNRSILVEGYFDVIALHQAGFNEVVASLGTSVT FT ESHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPDDA FT VNKNGADFFAKLIDKRISLSEMIWHIEYSGKNFRTAEEKANLEKNLKDYCNKISDSNLK FT ASYYRFFKDQIWQNLVTKQKKIITPSSNSVLIASSHCYSELEMLEHAFCALLIKFPIMF FT AEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNKVKENEITAIVEKTSFFDIFLLLSKA FT DNLFLDISFNKNNIRLDLLWQWLYKKYYLINLQQEYAISINSNHDFEKVLLYKKEIIKI FT VNELQVLNESFINQTIT" FT gene 4136..6043 FT /gene="rpoD" FT CDS 4136..6043 FT /codon_start=1 FT /transl_table=11 FT /gene="rpoD" FT /product="major sigma factor of RNA polymerase" FT /db_xref="GOA:P33451" FT /db_xref="HSSP:1KU3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/Swiss-Prot:P33451" FT /protein_id="AAB81404.1" FT /translation="MSNSNIDNDPAKIDSLLKKAKSKKIPVTYDDINKALPLNKNPSIR FT QLEEAILKFSDAGVDILESNEDDEIKLDIGMDEEFKLSTNVDNESEDEVEEENIGSTDD FT PVRLYLKDMGGVDLLTRENEVEIAKRIEEGRKTMTASLCRSPIAMRCFIVWYEDLVNEK FT MLLRDLIDLEANMLHDEVHENDEEHNSETEVEEHEDNHLSMSRVETQILHNIIDRMKKI FT SFICEELLIEAKKCYEESFEPKVLQNSKKYNNNLELLINEVSEIHFNSKRTEEILGKMY FT GINRDLINKETAFLKLAEKYGVTRQNFLDEYIGSVINAAWKEKMLKNKKVAWKELITKE FT SDYIDQMINELSVIESNTGLLVNDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAK FT KYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIR FT IPVHMIETINKILRTSRQMLNELGYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENP FT VGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMN FT TDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSKKLNSFRNGGKRGDGNPSDLLEA FT " XX SQ Sequence 6106 BP; 2204 A; 762 C; 1046 G; 2094 T; 0 other; gagctaagtt tgtctctcca gaattacagg aagatttgga ggaagaatca ggttatgcct 60 cagaaagttc tgcagattac aaagctaaac aagagaagtt tttagctaaa attattaaag 120 gatataatat agttattact actgcacaaa ttccagggaa aaaagccccg atgcttgtta 180 cggacaaaat gatagaatct atgatgtatg gttcagtgat tgttgatata tcgactagta 240 caggcggaaa tgtagaaggt tcagagccgg ataaaattgt taccaggcac ggtgttacca 300 taataggttt attaaatctt gcatccaaga ttgctagtga cagctcaaag ttatattcta 360 agaatttgta taatttttta acatatgcac tgcaagacgg tcaatttaat atggatgatg 420 agttagtgcg tgatatgttg attacaaaag atggcaagat tgttaattat ataataagag 480 agaaatatga atcaattacc gataatggct aaacaggctg ctgaaattgc ctctaatgct 540 caagaattat caaataagtt aaaagatttg gtaatagatg ctagttggca aacaaacaca 600 aatactatag atccactagt gtttgctata actatttttg tattagcttc ttttgtcggt 660 tattatgttg tatggaaagt aacacccgca cttcatactc cgcttatgtc tattactaat 720 gctatttcag gtattatagt tattagttct atgattgcta taacaagtag ttctgctttt 780 gagttctcca gtctacttgg atcttttgca acgttgcttg cttctataaa tatttttggt 840 gggtttatag taacaacaag aatgcttgag atgtttaaga agtaatgtcg tattttgtat 900 tgatgaatac caccatatta ctacatgaat aaacaacgtt ggtgacatta aattgcatta 960 taaatccagt tctttatatt caacggtaac tacttcgtat gattttaatc cttttggtgt 1020 tgtgacttct acaaaatcac ctactgattt tccaattaaa gctttggcta taggagaagc 1080 gattgaaact ctttttttag ttatatcggc ttcatattct cctacaataa tatatgttac 1140 ttcttcttca gtatcgtcgt cgattaaagt aacagtagct ccaaatttta tgttatctcc 1200 cgataattta caaatatcaa taatttctgc tcttgctgtc atatcttcaa gctctttaat 1260 acgcccttct ataaatgctt gtttttcacg tgctgcttca tattctgcat tctcagataa 1320 atcgccatgt tctcgtgctt ctgctatatc ttcactaatt tttttacgtt ctacgtgttt 1380 taaatgttta agttcatgtt ctaatttttt aaaaccttta gcggtgatag gaaattttgt 1440 attcataaat tatattgtat agatttagta attttagtat actattttca ataatattga 1500 tttcagcaag tatatttgta atagttaaat ttgtcaaata agccttttta attatttagt 1560 gtttccctag atataataat tgtgattgac tgtatatttt gttgtattgt ggcaagtgtc 1620 tagataacaa ttaaaatact caaatttgta tttttacatg gatctcataa taaattacat 1680 gatgaaaact gtatgtagca ataaattagt aattttatga aaaccgaaga ttttgacttt 1740 gagaaaaagc gtaaaatttt tcacatatca gctataatat tcccgatgtt ttatttattt 1800 gttccaagaa tcgctattgc gttattatta tttataataa cttctattac attatattta 1860 gatgtaatac gccataataa tgcaaaaatt agaaaatttg taactcgatt tttttcaaaa 1920 attataagat taaaggaaaa taacggtact tttgctttaa gcggcattag ttttatgatg 1980 ttaggttttt tcttaacttc tattcttttt cctaaaaatt tagttatttg ttcgtggtta 2040 attttaatta tttcagattg tttagcggct cttgtcggta ttaaaatagg aagtagttta 2100 agtaatggta aatcaatagc tggttctttt actttcttcg tttctgcgct ttttataagt 2160 atattagtgt atttctattt aggatataat acaagttttg ttattatcat tataagctgt 2220 ataggtgcta cggcagttga attttattca aaatatttaa gaattaatga taatttatct 2280 ataccgcttt cttattgttt atcgactact atttttccct acatattgta atataatgag 2340 agttacacaa gaattttatg agtttttaag aaatcgcatt aacatatctg atgtagtaag 2400 acaaaaatta gctttaacta gaaaatctag taactatgta ggtttatgtc cttttcatca 2460 agaaaagaca ccatctttta ctgttagtga tagtaagaga tttttctatt gttttggatg 2520 taaagcatct ggtgatgtta taaaatttac ttctaatatt agtggtctgt cctataatga 2580 atctgctata aagcttgcaa acgattatgg tatagagata ccgaaattaa ctgtaaaaca 2640 gaaagaattt tatgaagaat ctgataatat cttaaatatt ttagagcttg ctaataaatt 2700 ttttagaacg caattaactc ctgaaatact aaattatcta tacaaaagaa atattactga 2760 aacgacaata aaagaatttt caataggttt tgcaccaaga aataataaat ttgaaaaatt 2820 ttttcttgat aagaaaatag atattacaaa gcttggtcaa gcaggtttaa ttggcaagtg 2880 caaaaatggt aaaatatata atctattttc taatcgtatt actattccaa ttagaaatat 2940 ttacaataaa attgtaggtt ttggcggcag agtattaggg aacgagttac ctaaatactt 3000 aaattcattt gaaactatag tatttcaaaa aagtgacatt ctatacggtg aacataaagc 3060 gataagcagt agctataaaa aaaatcgctc gattttagta gaaggttatt ttgatgttat 3120 agcgctacat caagcaggtt ttaatgaagt ggttgcaagt cttggtacta gtgttaccga 3180 gagtcactta cataaattat ggcgtgctgg tgatgaaatt atattatgtc ttgatgggga 3240 taatgcagga ataaaagcta gtataagaac tattaactta gcattaccgc ttgttaatag 3300 tgaaaagaaa atttctttta ttaggttacc aagcggactt gatcctgatg atgcagtaaa 3360 taaaaacggt gctgattttt ttgcaaagct tatagataaa agaataagct tatcagaaat 3420 gatttggcat attgaatata gcggcaagaa ttttagaact gcagaagaaa aagctaattt 3480 agagaaaaat ttaaaagatt actgcaataa aatatcagat agtaatttaa aagcaagtta 3540 ttacaggttt tttaaggatc aaatatggca aaatttagtc acgaagcaga agaaaattat 3600 aactccgagc tcaaattcag ttcttatagc ttcaagtcac tgctattcag agcttgaaat 3660 gctagaacat gctttttgtg ctttgttaat taagtttcct ataatgtttg cagaaaaaga 3720 tattagggat ttcatcttaa atttaaattt taataataaa tcgcttgaag aatttcgtaa 3780 ttggtactta aatgagatta tagataataa agtaaaagaa aatgaaatta ctgcaattgt 3840 ggaaaaaact agcttttttg atattttttt attattatca aaagctgata atttgttttt 3900 agatatctca tttaataaaa ataatatcag actagattta ttatggcagt ggctctataa 3960 aaaatattat ctaataaatt tacaacagga atacgctatt agcataaaca gtaatcatga 4020 ctttgaaaaa gttttgttat ataaaaaaga aattataaag attgtaaatg agcttcaagt 4080 tttaaacgaa tcttttatta atcagacgat aacttaaaaa gcatataggt atttaatgag 4140 caatagcaat atagacaatg atccagcgaa aatagatagt ttacttaaaa aagctaaatc 4200 taaaaagata ccggtcactt atgatgatat aaacaaagct ctccctctta ataaaaatcc 4260 ttcaataagg caattagaag aagctatatt aaaattttct gatgcaggag tagatatttt 4320 agaatctaat gaagatgatg aaattaagct tgatatcgga atggatgaag aatttaagct 4380 atctaccaat gttgataatg aatctgagga tgaggtagag gaagaaaata taggtagtac 4440 tgatgatcct gtgagattat atcttaagga tatgggaggc gttgatcttt taactcgtga 4500 aaatgaagta gaaatagcaa aaaggattga ggaaggacgt aaaacaatga ctgcttcctt 4560 atgcagaagt cctattgcta tgcgttgttt tatagtatgg tatgaagatt tagttaatga 4620 aaaaatgtta ctacgtgatt tgatcgattt agaagctaac atgttacatg atgaagtgca 4680 cgaaaatgat gaagaacata atagtgaaac tgaagtagaa gagcatgaag ataatcactt 4740 atctatgtct agagtagaaa cgcaaatatt gcataatatc atagatcgta tgaaaaagat 4800 ttcttttata tgtgaagagc tactaattga agctaaaaaa tgttatgaag aatcttttga 4860 gccgaaagtt ttgcaaaata gcaaaaaata taataataat ttagaattat taataaatga 4920 ggtttcagaa atacatttta attctaaaag aacggaagag attctaggga aaatgtatgg 4980 aataaatcgt gatttaatta ataaagaaac ggctttttta aaacttgctg aaaaatacgg 5040 agtcactcgt caaaatttcc ttgatgaata tataggatcg gttatcaatg cggcatggaa 5100 agaaaaaatg cttaaaaata aaaaagttgc ttggaaagag ttgattacta aagaatcgga 5160 ttatatagat cagatgatta atgaattatc agttatagaa tctaataccg gtcttttagt 5220 taatgatttt aaaaaactag tgaatactat tcaaaaaagt gaaagacaaa cgctgcaagc 5280 gaaaaaagat atgatagaag caaatttgcg tttagtcata tcgattgcta aaaaatatgc 5340 taatagaggc ctacagtttt tagatttaat ccaagaaggt aatataggac ttatgaaagc 5400 agtagataaa tttgaatatc gtcgcggtta taaattttct acttatgcca cttggtggat 5460 tagacaagct ataacaagag caattgcaga tcaagcaagg actatacgta ttcctgtgca 5520 tatgattgaa acaattaata agatacttcg tacttcaaga caaatgctta atgagcttgg 5580 atatgaacca acggcaacag aaattgctaa ccgtctttca atgccgcttg ataaagtgcg 5640 taaagttatg aaaatagcta aagaacctat aagtcttgag aatccagtgg gtgatgatag 5700 tgatggtggt caattaggtg attttatcga agataagaat gcagtagcac cgattgatgc 5760 ggcaattcag tcaaatttac gagaagttac cactagagta cttgcgacac ttacgcctcg 5820 tgaagaaaga gtactgagaa tgcgtttcgg tataggtatg aatactgacc atacattaga 5880 agaagtagga cagcaattta aagtaactag agaacgtata agacaaattg agtcaaaggc 5940 tttaagaaag ttacaacatc caattagatc aaaaaaactt aatagtttta gaaacggtgg 6000 aaaacgtggt gatggtaacc catcagattt actagaagca tgataatact taatactgtc 6060 attttctgtg gttttatcat gggatattgt atcatagcaa gaattc 6106 // |
|