EBI Dbfetch

ID   S77541; SV 1; linear; genomic RNA; STD; VRL; 1917 BP.
XX
AC   S77541;
XX
DT   13-JAN-1994 (Rel. 38, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE   haemagglutinin-neuraminidase [La Piedad, Michoacan virus LPMV, swine,
DE   Genomic RNA, 1917 nt].
XX
KW   .
XX
OS   Porcine rubulavirus
OC   Viruses; ssRNA negative-strand viruses; Mononegavirales; Paramyxoviridae;
OC   Paramyxovirinae; Rubulavirus.
XX
RN   [1]
RC   GenBank staff at the National Library of Medicine created this entry [NCBI
RC   gibbsq 77541] from the original journal article.
RP   1-1917
RX   DOI; 10.1007/BF01317194
RX   PUBMED; 1731697.
RA   Sundqvist A., Berg M., Moreno-Lopez J., Linne T.;
RT   "The haemagglutinin-neuraminidase glycoprotein of the porcine paramyxovirus
RT   LPMV: comparison with other paramyxoviruses revealed the closest
RT   relationship to simian virus 5 and mumps virus";
RL   Arch. Virol. 122(3-4):331-340(1992).
XX
DR   EMBL-TPA; BK005918.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1917
FT                   /organism="Porcine rubulavirus"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:53179"
FT   gene            1..1917
FT                   /gene="haemagglutinin-neuraminidase, HN"
FT   CDS             129..1859
FT                   /codon_start=1
FT                   /gene="haemagglutinin-neuraminidase, HN"
FT                   /product="haemagglutinin-neuraminidase"
FT                   /note="HN"
FT                   /db_xref="GOA:Q86903"
FT                   /db_xref="HSSP:1USR"
FT                   /db_xref="InterPro:IPR000665"
FT                   /db_xref="InterPro:IPR011040"
FT                   /db_xref="InterPro:IPR016285"
FT                   /db_xref="UniProtKB/TrEMBL:Q86903"
FT                   /protein_id="AAB21049.1"
FT                   /translation="MSQLGTDQIMHLAQPAIARRTWRLCFRIFALFILIAIVITQIFML
FT                   TFDHTLLTTTQFLTSIGNLQSTITSWTPDVQAMLSISNQLIYTTSITLPLKISTTEMSI
FT                   LTAIRDHCHCPDCSSACPTRQMLLNDPRYMSGVNQFIGAPTESINITFGPLFGIPSFIP
FT                   TSTTTQGCTRIPSFALGPSHWCYTHNFITAGCADGGHSNQYLAMGTIQSASDGSPLLIT
FT                   ARSYYLSDGVNRKSCSIAVVPGGCAMYCYVATRSETDYYAGNSPPQQLLTLVFSNDTII
FT                   ERTIHPTGLANGWVMLVPGVGSGTLYNEYLLFPAYGGMQQILANQSGEINQFFTPYNAT
FT                   VRCAMAQPQFSQRAAASYYPRYFSNRWIRSAIVACPYRAIYQTQCTLIPLPNRMVMMGS
FT                   EGRIFTLGDRLFYYQRSSSWWPYPLLYQVGLNFLTTPPSVSSMTQVPLEHLARPGKGGC
FT                   PGNSHCPATCVTGVYADVWPLTDPRSGVGGTSLVAAGGLDSTSERMAPVNYLAIGESLL
FT                   SKTYLLSKTQPAAYTTTTCFRDTDTGKIYCITIAELGKVLLGEFQIVPFLREIKIQSRY
FT                   "
XX
SQ   Sequence 1917 BP; 528 A; 486 C; 399 G; 504 T; 0 other;
     ttaagaaaaa accattatag taagaaaata gtagaccgcc acctaacaag gagaactagg        60
     cccgacaagc cacacccgtc cacacaagca gtcccttagt tattcaggtg cctagggcgt       120
     gtagggcaat gtctcaatta gggactgatc aaatcatgca ccttgctcag ccagccattg       180
     caaggcgcac atggaggctc tgcttccgga tctttgcttt atttatcctc attgctatag       240
     tgattacaca aattttcatg cttacttttg atcatacact actgacaacg acccagttct       300
     taactagtat tggtaacctg cagagtacaa taacctcgtg gaccccggat gtacaggcta       360
     tgttgagcat ttctaatcaa ctcatatata ccacgtcaat tactcttcca ttaaaaatct       420
     caactacaga aatgtctatt ctcaccgcca ttcgagatca ctgtcactgc cctgattgtt       480
     catctgcctg ccccaccaga caaatgctac tcaatgatcc acgatatatg agtggtgtca       540
     atcagtttat tggggcccca acagagagca taaatatcac atttggacct ttgttcggta       600
     ttccaagctt tatccctaca tcaacaacta cacaaggatg tactcggata ccatcatttg       660
     ctctaggacc aagccactgg tgttacacac ataattttat caccgcaggg tgtgcagacg       720
     gagggcactc aaatcagtat ttggccatgg gaacaataca gagtgcgtca gacggctcac       780
     cattattgat tacagctaga tcttattatc ttagtgacgg ggtgaatagg aaaagttgct       840
     cgattgctgt agtaccgggt ggatgcgcga tgtactgcta cgtcgcgaca cgttctgaaa       900
     ccgattacta cgctggtaat agccccccac aacaactctt gactcttgta ttctctaatg       960
     acaccatcat cgagcgcacc atccacccca ccggactggc caacggatgg gtaatgctgg      1020
     ttcctggagt agggagcggg acactataca atgagtatct gttattcccc gcctatgggg      1080
     gcatgcagca aatcttggca aaccagagtg gtgagataaa ccagttcttc acaccataca      1140
     atgccactgt gaggtgtgca atggctcagc ctcaattttc ccaacgagca gctgcctcct      1200
     attacccccg ttacttttca aacagatgga ttcgctctgc aattgttgcc tgcccttacc      1260
     gagctattta tcagactcaa tgcaccctga ttcccctccc gaatagaatg gtaatgatgg      1320
     gaagtgaagg gcgaatcttc acacttggtg accgcttgtt ttattatcaa cgcagtagtt      1380
     cttggtggcc atacccacta ctgtaccagg ttggattaaa ctttctcacg actcctccca      1440
     gtgtttcctc gatgactcaa gtccctttgg agcatcttgc gagaccgggg aaagggggtt      1500
     gtccaggaaa cagtcactgt ccagcaacat gcgttacagg agtatacgct gatgtatggc      1560
     cgctcaccga ccctaggagt ggagtgggcg ggacctcact tgttgcggca ggagggctag      1620
     atagcacctc cgaaagaatg gcacctgtca actatctcgc gattggggaa tccttattgt      1680
     caaagacata tcttctctcc aaaacacaac ctgctgcata taccactacc acctgcttcc      1740
     gtgatacgga tacagggaaa atctattgca ttacaatagc tgaattaggg aaagtgctac      1800
     ttggtgaatt tcagattgta cccttcttac gagagattaa gattcaatca cgctattaag      1860
     ttgttaaatt actacccacg attcagacac tacaaaatcc cttactttaa gaaaaaa         1917
//