 |
|
EBI DbfetchID M95398; SV 1; linear; genomic DNA; STD; PRO; 4304 BP. XX AC M95398; XX DT 16-JUN-1992 (Rel. 32, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Escherichia coli lipopolysaccharide core synthesis proteins (rfaY, rfaZ, DE rfaL, and rfaK) genes, complete cds. XX KW lipopolysaccharide biosynthesis protein; rfaK gene; rfaL gene; rfaY gene; KW rfaZ gene. XX OS Escherichia coli OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Escherichia. XX RN [1] RP 1-4304 RX PUBMED; 1624462. RA Klena J.D., Pradel E.; RT "Comparison of lipopolysaccharide biosynthesis genes rfaK, rfaL, rfaY, and RT rfaZ of Escherichia coli K-12 and Salmonella typhimurium"; RL J. Bacteriol. 174(14):4746-4752(1992). XX DR GOA; P24173. DR InterPro; IPR011908; Heptsyl_trn_I. DR PDB; 2H1H; X-ray. DR UniProtKB/Swiss-Prot; P24173; RFAC_ECOLI. XX FH Key Location/Qualifiers FH FT source 1..4304 FT /organism="Escherichia coli" FT /strain="K-12" FT /mol_type="genomic DNA" FT /db_xref="taxon:562" FT CDS 97..795 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaY" FT /function="LPS core synthesis" FT /db_xref="GOA:P27240" FT /db_xref="InterPro:IPR009330" FT /db_xref="UniProtKB/Swiss-Prot:P27240" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA24521.1" FT /translation="MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDT FT KVMLIVSDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFY FT LLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIHESINALHQHGMVSGDPHR FT GNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNF FT MRRLKGKPAR" FT CDS 866..1717 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaZ" FT /function="LPS core synthesis" FT /db_xref="GOA:P27241" FT /db_xref="UniProtKB/Swiss-Prot:P27241" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA24522.1" FT /translation="MKNIRYIDKKDVENLIENKISDDVIIFLSGPTSQKTPLSVLRTKD FT IIAVNGSAQYLLGNNIVPFIYVLTDVRFLHQRRDDFYKFSQRSRYTIVNVDVYEHASKE FT DKLYILQNCLVLRSFYRREKGGFIKKIKFNILRQIHKELLISVPLSKKGRLVGFCKDIS FT LGYCSCHTIAFAAIQIAYSLKYARIICSGLDLTGSCSRFYDENKNPMPSELSRDLFKIL FT PFFRFMHDNVKDINIYNLSDDTAISYDVIPFIKLQDISAEESKDMTRKKMQYRTSTDSY FT AN" FT CDS 1750..2823 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaK" FT /function="LPS core synthesis" FT /db_xref="GOA:P27242" FT /db_xref="InterPro:IPR002201" FT /db_xref="UniProtKB/Swiss-Prot:P27242" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA24523.1" FT /translation="MRLGTFHKKKRFYINKIKINFLSFLFRNKINNQITDPAQVKSCLI FT IHDNNKLGDLIVLSSIYRELYSKGVKITLLTNRKGGEFLSNNKNIFEFCIKESTGFLEM FT LTLCKHLRDLQFDIVLDPFETMPSFKHSLILSSLKDSYILGFDHWYKRYYSFYHPHDEC FT LKEHMSTRAIEILKHIYGEGKFSTNYDLHLPVDVEDKIKEFIGDTRIVIINPLGAKKIC FT RLTFEQIKVIYQEVKTHFENYRIIFTGLPQDLLTIPILEIETLPFDEFIYTVALTKYSD FT FVISVDTALVHMAAAYHKPTLAFYPNSRTPEYPSHLIWSPNHHKSIQIVSPTYTVKDID FT TETLTNSVKRLSCIDKK" FT CDS complement(2855..4114) FT /codon_start=1 FT /transl_table=11 FT /gene="rfaL" FT /function="LPS core synthesis/O Antigen attachment" FT /db_xref="GOA:P27243" FT /db_xref="InterPro:IPR007016" FT /db_xref="UniProtKB/Swiss-Prot:P27243" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA24524.1" FT /translation="MLTSFKLHSLKPYTLKSSMILEIITYILCFFSMIIAFVDNTFSIK FT IYNITAIVCLLSLILRGRQENYNIKNLILPLSIFLIGLLDLIWYSAFKVDNSPFRATYH FT SYLNTAKIFIFGSFIVFLTLTSQLKSKKESVLYTLYSLSFLIAGYAMYINSIHENDRIS FT FGVGTATGAAYSTMLIGIVSGVAILYTKKNHPFLFLLNSCAGTLCSGANTNQSNPTPVP FT YNCVAALIAYYNKSPKKFTSSIVLLIAILASIVIIFNKPIQNRYNEALNDLNSYTNANS FT VTSLGARLAMYEIGLNIFIKSPFSFTSAESRAESMNLLVAEHNRLRGALEFSNVHLHNE FT IIERGSLKGLMGIFSTLFLYFSLFYIAYKKRALGLLILTLGIVGIGLSDVIIWARSIPI FT IIISAIVLLLVINNRNNTIN" XX SQ Sequence 4304 BP; 1470 A; 697 C; 712 G; 1425 T; 0 other; tcttttagtg caacatcatt atatctcagg aattatagca ggagtctgtt atctttgccg 60 aaaatattac cgtaaataac atttaactgg tttattatga ttcagaagag caagatcaaa 120 gacttggttg tttttaccga tgaaaacaat tcaaagtacc tcaatgtatt aaatgacttc 180 ttgtcttata atataaatat catcaaggtt tttcgttcta ttgatgatac aaaagttatg 240 cttattgtat ccgattacgg taaattgatt cttaaggttt tttctccgaa agttaagcgt 300 aacgaacgtt tctttaagtc tctgttaaaa ggtgattatt acgaacgcct ttttgagcaa 360 acccaaaaag tacgaaatga agggttaaat acactcaatg acttttattt attggctgaa 420 cggaaaacct tacgttttgt ccatacttat atcatgatca tcgagtatat tgatggcata 480 gagttgtgtg atatgcccga tattgatgat gcgctaaaaa ataaaattca cgaatcaatt 540 aatgccttac atcaacatgg catggtttct ggcgaccccc atcgtggtaa cttcattata 600 aaaaatggtg aggttcgaat tatcgatctc tccggaaagc gtgcttcagc gcagcgtaaa 660 gcgaaagatc gtattgactt agagcgtcat tacggtatta aaaatgagat tagagatcta 720 ggctattatc ttttagtata tcgtaaaaaa atgcgcaatt ttatgcggcg tttgaaaggg 780 aaaccagcgc gctaaaaaaa atcccacaat tacatgtctt caccaggaca gttttaagcg 840 gagttattta tttcacaggt ttatcatgaa gaatattaga tacattgaca aaaaagatgt 900 tgaaaacctg attgaaaata aaatatctga tgatgttatt atttttcttt cgggccctac 960 atcgcaaaaa acacctttgt cagtattacg aacaaaggat attattgctg tcaatggttc 1020 tgcgcaatat ctgttaggta ataatatcgt tccttttata tatgtactta cagatgtccg 1080 atttttacat cagcgtcgtg atgattttta taaatttagc cagagaagtc gttataccat 1140 agtaaacgtt gacgtttatg aacacgcttc caaagaagat aaactttata tcctccagaa 1200 ctgcctcgta ttacggtcct tttaccgtcg ggaaaaaggt ggttttataa agaagattaa 1260 atttaatatt ttgagacaga ttcacaaaga actgctgatc tctgtaccgt tgtctaaaaa 1320 aggtcgtctg gttggatttt gcaaggacat tagtcttggt tattgctcat gccatactat 1380 tgcctttgct gcaattcaaa tcgcatattc acttaagtat gcgcggatta tttgttctgg 1440 tcttgattta acgggtagct gttctcgttt ctatgatgag aataaaaatc ccatgccctc 1500 ggaattaagt agggatttat tcaaaatatt gccatttttt cgttttatgc atgataatgt 1560 aaaagatatt aatatttata atttatcaga tgatacagct atttcttacg atgtaattcc 1620 atttattaaa cttcaagaca tcagtgcaga agaatcaaaa gatatgacaa gaaaaaaaat 1680 gcaatataga acttcaaccg attcttatgc taattaatca tcctgaaact aaaataatat 1740 ggtataaaaa tgcgcttagg aacttttcac aaaaagaaaa gattttatat aaacaaaatc 1800 aagattaatt tcctttcttt tttatttcgc aataaaataa ataatcaaat tacagatcca 1860 gcacaagtta aatcatgcct tattattcat gataataata aacttggtga tctaattgta 1920 ttaagttcga tttatcgtga actttatagt aaaggggtta aaataactct tctcacaaat 1980 agaaagggtg gggaatttct ctctaataat aaaaatatat ttgagttctg tattaaagaa 2040 tcaaccggtt ttcttgaaat gcttactcta tgtaagcatc tgcgggattt acagttcgat 2100 attgtattag acccctttga aactatgccc tcatttaagc atagcttaat attatcaagt 2160 ttaaaagatt cttacattct gggttttgat cattggtata agcgttacta ttcattttac 2220 catccccacg atgaatgttt aaaagaacat atgagtacac gagcaataga aatactgaag 2280 catatttatg gtgagggtaa attttccacc aactacgact tgcatttacc agtagatgtt 2340 gaagataaaa taaaagaatt tattggagat acaagaatag tcattattaa tccattaggt 2400 gcaaaaaaaa tatgccgtct tacgtttgag caaataaaag ttatatatca agaagtgaaa 2460 acacactttg aaaattatcg gattatattt accgggttac cgcaagattt attgacaata 2520 ccaatacttg aaatcgaaac actaccattt gatgagttta tttataccgt tgcgttgacc 2580 aagtatagtg attttgtcat ttctgttgat acagctcttg ttcatatggc tgcggcttat 2640 cataaaccaa cgcttgcatt ttaccctaat tcacgtactc cggaatatcc ctcgcattta 2700 atttggtccc cgaatcatca taaatctata caaatagtat ccccaacata tacggtaaaa 2760 gatatcgata ctgaaacttt aactaattca gtaaagagat taagttgtat agataagaag 2820 tgagttttaa ctcacttctt aaacttgttt attcttaatt aattgtattg ttacgattat 2880 taatgacgag taagaggact atagcggata taatgataat tggaatgctg cgtgcccata 2940 tgatcacatc actgagtcca atccccacaa tgccaagcgt taatatcaac aaacccaaag 3000 ctcgtttttt atatgctata taaaatagtg aaaaatagag gaaaagtgtg gaaaaaattc 3060 ccatcagacc tttcagtgac cctcgttcaa ttatctcatt atgtagatgt acgttagaaa 3120 actccaatgc ccctcttagc ctattgtgtt ctgcaactaa caaattcata ctttcagcgc 3180 gtgactctgc tgatgtaaat gaaaaaggtg actttatgaa tatatttaaa ccaatttcgt 3240 acattgccag tcttgcacct agggaagtaa cactattagc attggtataa ctgtttaagt 3300 catttaatgc ttcattatag cgattctgta ttggtttatt aaatataata acaatgctag 3360 ctaatatagc aattagtaga acaatagagg aagtgaattt cttgggtgat ttattataat 3420 aagctattaa tgcagcaaca caattatagg gaacaggagt agggttgctc tggtttgtgt 3480 tagcgccaga acataaagta cccgcgcaac tatttaataa aaataaaaaa ggatgatttt 3540 tcttagtata aagaatcgca acgccactaa ctatccctat tagcattgtt gaatatgctg 3600 ctcctgttgc cgttcctaca ccaaaagaaa tgcggtcatt ttcatgaatg ctattaatat 3660 acattgcata tccagcaatt agaaatgaca gagaatacaa agtgtataat acactctctt 3720 tttttgattt tagctggcta gttagtgtca agaaaacaat aaaagaacca aatataaata 3780 ttttggcagt atttaaataa ctatggtaag tagcacgaaa tggcgaatta tctactttaa 3840 acgcagaata ccaaattaaa tcaagcaagc ctattaaaaa tatagaaagg ggaagaataa 3900 ggttttttat attataattt tcttgtctgc cacgtaaaat tagtgacaat aagcaaacta 3960 tagcagtgat attatatatt tttatgctga aagtattatc gacgaatgca attatcattg 4020 aaaaaaaaca taatatataa gttattatct ctaaaatcat tgatgatttc agagtgtaag 4080 gtttcaatga atgaagttta aaggatgtta gcatgtttta cctttataat gatgataact 4140 tttccaaaac tgcttgactg ttgaggttaa ttaaattttc tcttggagcc ctacatacca 4200 tctgattctt cccataccca ccaattaatc ccggatcggt tggtccataa accgtgatat 4260 tgggtctatc cagtgccgcc gttaaatggc ttaaccccgt atcc 4304 // |
|