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EBI DbfetchID M93148; SV 1; linear; genomic DNA; STD; MUS; 4040 BP. XX AC M93148; XX DT 06-JUN-1992 (Rel. 32, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Mouse homeobox protein (Hox-1.11) gene, complete cds. XX KW homeobox protein. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-4040 RX DOI; 10.1073/pnas.89.14.6280 RX PUBMED; 1352886. RA Tan D.-P., Ferrante J., Nazarali A., Shao X., Kozak C.A., Guo V., RA Nirenberg M.; RT "Murine Hox-1.11 homeobox gene structure and expression"; RL Proc. Natl. Acad. Sci. U.S.A. 89(14):6280-6284(1992). XX DR TRANSFAC; T01698; T01698. XX FH Key Location/Qualifiers FH FT source 1..4040 FT /organism="Mus musculus" FT /map="chromosome 6" FT /strain="ICR Swiss" FT /mol_type="genomic DNA" FT /dev_stage="adult" FT /tissue_lib="lambda Gem-11" FT /tissue_type="liver" FT /db_xref="taxon:10090" FT exon 135..821 FT /gene="Hox1.11" FT /number=1 FT mRNA join(135..821,1462..2234) FT /gene="Hox1.11" FT /product="homeobox protein" FT CDS join(443..821,1462..2201) FT /codon_start=1 FT /gene="Hox1.11" FT /product="homeobox protein" FT /db_xref="GOA:P31245" FT /db_xref="HSSP:1B72" FT /db_xref="InterPro:IPR012287" FT /db_xref="MGI:96174" FT /db_xref="UniProtKB/Swiss-Prot:P31245" FT /protein_id="AAA37835.1" FT /translation="MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHS FT TLIPPPFEQTIPSLNPGSHPRHGAGVGGRPKSSPAGSRGSPVPAGALQPPEYPWMKEKK FT AAKKTALPPAAASTGPACLGHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKY FT LCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKFKNLEDSDKVEED FT EEEKSLFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQTFPVSPLTSNEKNLK FT HFQHQSPTVPNCLSTMGQNCGAGLNNDSPEAIEVPSLQDFNVFSTDSCLQLSDALSPSL FT PGSLDSPVDISADSFDFFTDTLTTIDLQHLNY" FT intron 822..1461 FT /gene="Hox1.11" FT exon 1462..2234 FT /gene="Hox1.11" FT /number=2 FT misc_feature 1497..1676 FT /gene="Hox1.11" FT /note="homeobox" FT polyA_signal 2206..2211 FT /gene="Hox1.11" FT polyA_site 2234 FT /gene="Hox1.11" FT repeat_region 2581..2610 FT /label=rep_pyrimidine1 FT repeat_region 2780..2809 FT /label=repeat_T FT repeat_region 3269..3313 FT /label=repeat_CA FT repeat_region 3514..3539 FT /label=rep_pyrimidine2 FT repeat_region 3543..3570 FT /label=repeat_ATTT XX SQ Sequence 4040 BP; 1038 A; 974 C; 909 G; 1119 T; 0 other; caggaggcaa acaggcactc tcgcccccca cgcactcccg gggcattgcc atccacaccc 60 acatatatgt atttttgccc tgaaaaaaag tgtaaataaa gcctcgatgg cccccaatga 120 ggcgttcctt tctgactttt ttggatcaat caaacagaca gtggcttctt ttgattaaag 180 cccaaattgt cattgggcag aagcaatcat gtgacagcca attcggtcca atttcaacct 240 tgtctccatg aattcaatag tttaatagta gcgcggtccc catacggctg taatcagtga 300 attagaaaaa aaacacccca gcagcgatct tctatgatag attttttttt ccttcgcgct 360 cgcctttttc ctgggccttg cccccccaaa gcccctccaa aagagggaac ttttcctccg 420 agggggctcc aaggagaagg ccatgaatta cgaatttgag cgagagattg gttttatcaa 480 tagccagccg tcgctcgctg agtgcctgac atcttttccc cctgtcgctg atacatttca 540 aagttcatca atcaagacct cgacgctttc acactcgaca ctgattcctc ctccttttga 600 gcagaccatt cccagcctga acccgggcag tcaccctcgc cacggcgctg gcgttggcgg 660 ccgccccaag tcgagccccg cgggcagtcg cggcagcccg gtgcctgccg gcgccctgca 720 gccgcctgag tatccctgga tgaaggagaa gaaggcggcc aagaaaaccg cgctgccgcc 780 cgccgccgcc tccacgggcc ctgcctgcct cggccacaaa ggtcagtccg gagacttggc 840 cccaggtctc ggggaccctt gtccccctcc gggcttccct aggagcggtt gtgggggagg 900 ggaccatgag cttcgaggga agggggagag agagagatgc ctggtggcgg gtctcatgcc 960 cctgtggtct caggagtggg tttggtggag gggaaaatag atcccgagtc ccacaatgag 1020 acatatatat tttgaggagg gggggcactt tccctaactt gtgtaatgta ggatgattta 1080 tttgagttgg aactgacctc ctcttgtcta gttgtcctag agtttggctt tttgacagta 1140 atgaagagtg atagaccgct cttgctcagc taagcagctg atgcattaat tataaattgt 1200 gttgtagcta atataaagtt tgctcccgga tgaagaggtt gggggaagcc acaggcagga 1260 atttgatgga ggtggaagag actgggcttc cccgggctgg gctcccagga agggcagcac 1320 aatagctgca ctgcatccag gggcggccat tttgttgcag ttgatctttt ctgctgtatt 1380 tatgctccaa tggaataacc ctgctcggac ccttccacct tcaactgtat gtgtgtctct 1440 tgttggtttc cctttctgca gaatccctgg aaatagctga tggcagcggc gggggatcca 1500 ggcgtctgag aaccgcgtac accaacactc agcttttgga gctggaaaag gaatttcatt 1560 tcaacaagta cctttgcaga ccccgcaggg tggaaatcgc cgcgctgctg gatttgaccg 1620 agagacaagt gaaagtgtgg tttcagaacc ggagaatgaa gcataagagg caaacccagt 1680 gcaaggagaa ccaaaacagc gaagggaaat ttaaaaacct ggaggactcg gacaaagtgg 1740 aggaagacga ggaagagaag tcactctttg agcaagccct cagtgtctcc ggggcccttc 1800 tggagaggga agggtacact tttcagcaaa atgcgctctc tcaacagcag gctcccaatg 1860 gacacaatgg cgactcccaa actttcccag tttcgccttt aaccagcaat gagaaaaatt 1920 tgaaacattt tcagcaccag tcacccactg ttcctaactg cttgtcaaca atgggccaga 1980 actgtggagc tggcctaaac aatgacagtc ccgaggccat cgaggtcccc tctttgcagg 2040 acttcaatgt tttctccaca gattcctgcc tgcagctttc agatgcactg tcgcccagct 2100 tgcctggctc cctggacagt cctgtagata tctcagctga cagctttgac ttttttacag 2160 acacactcac cacaatcgac ctacagcatc tgaattacta agaacattaa agcaaaacaa 2220 agcttcacaa aacaaaacgc ctttgaccag gtggctttgc cttcttttat tctgggagtt 2280 gattttcgtt ttagtttctt cttgatctac ccctactctc tcaaatgttg aggactttcc 2340 gtttaatgtt ctcccctgac acagttttaa agccatctct tgcaaattat gttggcgttc 2400 taagtggttt ttacacagaa cccaacaagc ttctatgtga ttttcctgaa aaacaaaaca 2460 ggaggcctgc aagaaagtga ccataaattg tcttgtcact ttctgtttat ttttgtacca 2520 cattaggatg cattgtcatg cgtatttttg gtagaataaa ttctcctttg ctataagtag 2580 ctttcttatt tttttcttcc cctctttctc aagactcata ctgatttctt atacttcttt 2640 tagtctaaca tggtaaataa aagtctggtc acaatttact tttcaatctt aatatatttt 2700 attagggtgg catgttcaaa gcctgcaaca aacagcaaca aagaagaaaa ccagaaagtg 2760 ctagggcttc tggcaagact tttttttttt tttttttttt tttttttttg gatttttccc 2820 ccctaaggga atgaatttgg ttttcagtgt tgagactcag gccatagagt tacattagta 2880 atagaaatgg gcttgggcag cctgagttgg ccctagccca agcttttgag tgtggagagg 2940 aaaagtgcct acaaaaactt ccagttctag gacgagtgga gtggaatgga gttcccttac 3000 caagctgcta gtttctaggt caataacgga gttatcaaaa attcatttat ttatacacat 3060 ttgtttcaaa catctacgtt ccaactcttc ctttccctcc cccacacccc cattttcagt 3120 gtggttgatt aatctcccag ctgtggatgg gttcaggaaa aacagaccta aaagacagag 3180 gaaaacaaaa caaaacaaaa ccacggttac tagctgggaa atgcatgcca ggaagggctc 3240 tttccagcca tcccaagatt cttgccctca ccacacacac acacacacac acacacacac 3300 acacacacac acaatcgata tttaatcctt aaatctgttt acattgctaa taataaatca 3360 ttaaaggttt gaagtcaggt tagcaagtgg agattttaaa agtgtttttg caccctagat 3420 tattaattaa cccagtttat tagacagaga aggagcactt taaatgaaat atcaataaaa 3480 tgtgatctag ggtatgttat tgggctgttc tggttttttt ccttcttttg tctcctccca 3540 ctatttattt atttatttat ttatttattt ccctttctgg gttctattct ggtgacttac 3600 cgtgagaaac tgcagcaaca tgtgcgtggg gggggggggg cggtgattga tggaagaacc 3660 cagttcttaa tagcaaaagc ttgggaatta caatgaaacc tcggacttta ttcaggggtt 3720 tgctctctac cttcccttca ccctctactc ccctaatccc tcagcagcct ccatatgtgg 3780 ggactgtggt ggttttcagg ccccaggctc tgagatctga gcagggtgtc cgggctgtgg 3840 ccagggctgc gcagttcctg gatgtgattc gtcctaagct cataaatcaa acgctttcta 3900 tgaatgagaa tgtcatcaaa gagatcaatt gcaggaacac atgcacaaat aaaaatcctc 3960 ttacgtattt gccggggatc cccgtccgaa agcattaagt tagaaggcgt ttagtcataa 4020 ttcattttta ttgctctttt 4040 // |
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