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EBI DbfetchID M93015; SV 1; linear; unassigned DNA; STD; PRO; 3739 BP. XX AC M93015; XX DT 08-MAY-1992 (Rel. 31, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 8) XX DE Paracoccus denitrificans DNA repair protein (uvrA) gene, 3' end, and NADH DE dehydrogenase (NQO4, NQO5, NQO6, NQO7) genes, complete cds. XX KW DNA repair protein; excision nuclease; NADH dehydrogenase; ndhK gene; KW NQO4 gene; NQO5 gene; NQO6 gene; NQO7 gene; uvrA gene. XX OS Paracoccus denitrificans OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; OC Rhodobacteraceae; Paracoccus. XX RN [1] RP 1-3739 RX DOI; 10.1021/bi00145a009 RX PUBMED; 1637825. RA Xu X., Matsuno-Yagi A., Yagi T.; RT "Gene cluster of the energy-transducing NADH-quinone oxidoreductase of RT Paracoccus denitrificans: characterization of four structural gene RT products"; RL Biochemistry 31(30):6925-6932(1992). XX RN [2] RP 1-3739 RA Yagi T.; RT ; RL Submitted (08-MAY-1992) to the EMBL/GenBank/DDBJ databases. RL Takao Yagi, The Scripps Research Institute Division of Biochemistry, RL SBR-15, La Jolla, CA 92037 USA XX CC On Oct 22, 1993 this sequence version replaced gi:150618. XX FH Key Location/Qualifiers FH FT source 1..3739 FT /organism="Paracoccus denitrificans" FT /mol_type="unassigned DNA" FT /db_xref="taxon:266" FT CDS 1..333 FT /partial FT /codon_start=1 FT /transl_table=11 FT /gene="uvrA" FT /product="DNA repair protein" FT /function="ATPase and DNA binding protein" FT /note="putative" FT /db_xref="GOA:P29927" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/Swiss-Prot:P29927" FT /protein_id="AAA03034.1" FT /translation="KLSKELSRRATGKTLYILDEPTTGLHFEDVRKLLEVLHSLVDQGN FT TVVVIEHNLDVIKTADWIIDIGPEGGDGGGAIVATGTPEQVAEVPESHTGRYLAPMLDA FT ARSAAE" FT CDS 880..1245 FT /codon_start=1 FT /transl_table=11 FT /transl_except=(pos:880..882,aa:Met) FT /gene="NQO7" FT /standard_name="nd3 subunit of Paracoccus NDH-1" FT /product="NADH dehydrogenase" FT /EC_number="1.6.5.3" FT /note="GTG start codon; putative" FT /db_xref="GOA:P29919" FT /db_xref="InterPro:IPR000440" FT /db_xref="UniProtKB/Swiss-Prot:P29919" FT /protein_id="AAA03035.1" FT /translation="MEYLLQEYLPILVFLGMASALAIVLILAAAVIAVRNPDPEKVSAY FT ECGFNAFDDARMKFDVRFYLVSILFIIFDLEVAFLFPWAVSFASLSDVAFWGLMVFLAV FT LTVGFAYEWKKGALEWA" FT CDS 1245..1769 FT /codon_start=1 FT /transl_table=11 FT /gene="NQO6" FT /standard_name="ndhK subunit of Paracoccus NDH-1" FT /product="NADH dehydrogenase" FT /EC_number="1.6.5.3" FT /note="putative" FT /db_xref="GOA:P29918" FT /db_xref="InterPro:IPR014406" FT /db_xref="UniProtKB/Swiss-Prot:P29918" FT /protein_id="AAA03036.1" FT /translation="MTGLNTAGADRDLATAELNRELQDKGFLLTTTEDIINWARNGSLH FT WMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYD FT QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ FT RRIRRTGTLVR" FT CDS 1773..2399 FT /codon_start=1 FT /transl_table=11 FT /gene="NQO5" FT /standard_name="25k subunit of Paracoccus NDH-1" FT /product="NADH dehydrogenase" FT /EC_number="1.6.5.3" FT /db_xref="GOA:P29917" FT /db_xref="InterPro:IPR020396" FT /db_xref="UniProtKB/Swiss-Prot:P29917" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA03037.1" FT /translation="MSEALSDEALLELAEHIALRRENDVISTQVAFGELTVNATLSGVI FT GLIEFLRNDPNCRFSTLIDITAVDNPARPARFDVVYHLLSMYQNQRIRVKVQVREDELV FT PSLIGVFPGANWYEREVFDLFGILFSGHSDLRRILTDYGFRGHPLRKDFPTTGYVEVRW FT SDIEKRVVYEPVNLVQEYRQFDFLSPWEGAKYVLPGDEKAPEAKK" FT CDS 2453..3691 FT /codon_start=1 FT /transl_table=11 FT /gene="NQO4" FT /standard_name="48k subunit of Paracoccus NDH-1" FT /product="NADH dehydrogenase" FT /EC_number="1.6.5.3" FT /db_xref="GOA:P29916" FT /db_xref="InterPro:IPR014029" FT /db_xref="UniProtKB/Swiss-Prot:P29916" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA03038.1" FT /translation="MDGDIRKNSLDDGSMDALTGEQSIRNFNINFGPQHPAAHGLLRMV FT LELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIER FT LTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTPPLWGFEAREELMIFYER FT ACGARLHAAYFRPGGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDI FT GIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRM FT AEMRESCKIMQQAVQKLRAEPAGDVLARGKLTPPRRAEMKRDMESLIHHFKLYTEGFKV FT PAGEVYAAVEGPKGEFGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAI FT IATLDIVFGEVDR" XX SQ Sequence 3739 BP; 634 A; 1211 C; 1219 G; 675 T; 0 other; aagctttcca aggaactgtc gcgccgcgcc accggcaaga cgctgtatat cctggacgaa 60 ccgacgaccg ggctgcattt cgaggatgtg cgcaagctgt tggaagtgct gcattccctg 120 gtcgaccagg gcaacacggt cgtggtgatc gaacataacc tggacgtcat caagaccgcc 180 gactggatca tcgacatcgg ccccgagggg ggcgacggcg gcggcgccat cgtcgccacc 240 ggcacgcccg aacaggtggc cgaggtgccg gaaagccata ccggccgcta tctggcgccc 300 atgctcgacg cggcgcgcag cgctgcggaa tgagcacgat cgcctggcag cgggtcgagg 360 gcgccgggct ggcgcttggc gggcttgccg tggccgctct ggcggcgccg ggctggggcg 420 ctgcgatctg gctggcgatc ctgcttgcgc ccgacctgac gatggctggc tatctggccg 480 gcccgcgcat cggtgcggca ttttacaacc tgggccatct ctatgcgccg gctttcctgc 540 tgacggtgct gggcgtggcg ctgggatcga ccgcgctgat gcccccccgc gggctttggc 600 tggcgcatgt cggctttgac cggatgctgg gttacgggct gaaatcgccc tcgggctttc 660 gcgacacgca tctgggtcga atcggccggg aagccgagta aaataccttg agaatcccgt 720 gccgtgacct gcggttttct cgtgtcgcag cggctgcaaa gccggtctga cgcggggtgg 780 caccgttgac catatccgcg accggggata aacggacctt agccaaaccc atcgcggggc 840 gccagtcggg ttcctgcgag cgaaagggag cccaacccag tggaatacct gctgcaagaa 900 tacctgccga tcctggtttt tctgggaatg gcctcggcgc ttgccatcgt gctgattctg 960 gccgccgcgg tcatcgccgt acgcaacccg gacccggaaa aggtcagcgc ctatgaatgc 1020 ggcttcaacg ccttcgacga cgcgcggatg aagttcgacg tgcgcttcta tctggtgtcg 1080 atcctgttca tcatcttcga cctcgaagtc gctttcctgt tcccctgggc ggtcagcttt 1140 gccagcctgt cggacgtggc cttctgggga ctgatggtgt tcctggccgt tctgaccgtg 1200 ggctttgcct atgaatggaa gaagggggcg ctggaatggg cgtgatgacc ggcctgaaca 1260 ccgcaggcgc cgaccgtgac ctcgccacgg ccgagctgaa ccgagagttg caggacaagg 1320 gcttcctgct gaccacgacc gaggacatca tcaactgggc gcgcaacggt tcgctgcact 1380 ggatgacctt cggcctggcc tgctgcgcgg tcgagatgat gcagacctcg atgccgcgct 1440 atgacctgga acgcttcggg accgcgccgc gcgcctcgcc gcggcagtcg gacctgatga 1500 tcgtcgcggg cacgctgacc aacaagatgg ccccggcgct gcgcaaggtc tatgaccaga 1560 tgcccgagcc gcgctatgtc atctcgatgg gcagctgcgc caatggcggc ggctactatc 1620 attattccta ttcggtggtg cgcggctgcg accgcatcgt gccggtggac atctatgtcc 1680 cgggctgccc gccgaccgcc gaggcgctgc tctacggcat cctgcaactt cagcgccgca 1740 tccggcgcac cggcacgctg gtgaggtgag ccatgtccga agccctctct gacgaagccc 1800 tgctggaact ggccgagcat atcgcgctcc gccgcgagaa cgacgtgatc tcgacccagg 1860 tcgccttcgg cgagctgacg gtcaatgcca cgctgtcggg cgtgatcggc ctgatcgaat 1920 tcctgcgcaa cgatccgaac tgccgctttt ccacgctgat cgacattacc gccgtggaca 1980 acccggcacg gcctgcgcgt ttcgacgtgg tctatcacct gctgtcgatg tatcaaaacc 2040 agcgcatccg ggttaaggtc caggtgcgcg aggacgagct ggttcccagc ctgatcggcg 2100 tattccccgg cgccaactgg tatgagcgcg aggtcttcga cctgttcggc atcctgttct 2160 cgggccattc ggacctgcgc cgcatcctga ccgattacgg tttccgcggc cacccgctgc 2220 gcaaggattt cccgaccaca ggctatgtcg aggtgcgctg gagcgacatc gagaagcgcg 2280 tggtctacga gccggtgaac ctggttcagg aataccgcca gttcgacttc ctgtccccct 2340 gggagggcgc gaaatacgtg cttccgggcg acgagaaggc gccggaggcg aagaagtgac 2400 cgcagccgcg cagcacgggc tgtgcgtccc gcatcggatt tgagggctga ccatggacgg 2460 cgacatccgc aagaacagct tagacgacgg ctcgatggac gccctgaccg gcgagcagag 2520 cattcgcaac ttcaacatca acttcggccc gcagcacccg gccgcccatg ggctgctgcg 2580 catggtgctg gagctggacg gcgagatcgt cgagcgcgcc gatccgcata tcggcctgct 2640 gcaccgcggc accgagaagc tgatggaaag ccgcacctat ctgcagaacc tgccctatct 2700 ggaccggctg gactatgtgg cgccgatgaa ccaggaacat gcctggtgcc tggccatcga 2760 gcggttgacc ggcacggtga tcccgcgccg cgccagcctg atccgggtgc tctattccga 2820 gatcggccgc atcctgaacc acctgatggg cgtcaccacg ggcgccatgg acgtgggcgc 2880 gctgaccccg ccgctctggg ggttcgaagc gcgcgaagaa ctgatgatct tttacgagcg 2940 cgcttgcggg gcgcggctgc atgccgccta tttccgcccg ggcggggtgc atcaggacct 3000 gccgcccgac ctcctggacg acatcgagga atggtgcgag cgcttcccga agctggtcga 3060 cgacctcgac acgctcctga cggaaaaccg catcttcaag cagcgcctgg tcgatatcgg 3120 catcgtgacc gaggccgacg cgctggactg gggctatacc ggcgtgatgg tgcgcggctc 3180 gggcctggcc tgggacctgc gccgttcgca gccctatgaa tgctatgacg aattcgactt 3240 ccagatcccg gtgggcagga acggcgactg ctacgaccgc tatctgtgcc gcatggccga 3300 gatgcgcgaa tcctgcaaga tcatgcagca ggcggtgcag aagctgcgcg ccgagccggc 3360 gggcgacgtg ctggcccgcg gcaagctgac cccgcccagg cgcgccgaga tgaagcgcga 3420 catggaaagc ctgatccacc acttcaagct ttacaccgaa ggcttcaagg ttccggcggg 3480 cgaggtctat gccgccgtcg agggccccaa gggcgagttc ggcgtctatc tggtcgccga 3540 cggcaccaac aagccctggc gtgccaagct gcgggcgccg ggttttgcgc atctccagtc 3600 gatcgactgg atgtcgcgcg gccacatgct ggccgacgtt ccggcgatca tcgccacgct 3660 cgacatcgtt ttcggagagg ttgaccgctg atgctgcgcc gtctgtcccc catccagccg 3720 gactccttcg agttcacgc 3739 // |
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