EBI Dbfetch

ID   M91248; SV 1; linear; genomic DNA; STD; PRO; 1488 BP.
XX
AC   M91248;
XX
DT   15-APR-1992 (Rel. 31, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE   C. thermosaccharolyticum D-xylose isomerase (xylA) gene, complete cds.
XX
KW   D-xylose isomerase.
XX
OS   Thermoanaerobacterium thermosaccharolyticum
OC   Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales;
OC   Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.
XX
RN   [1]
RP   1-1488
RX   DOI; 10.1016/0378-1119(94)90134-1
RX   PUBMED; 8163183.
RA   Meaden P.G., Aduse-Opoku J., Reizer J., Reizer A., Lanceman Y.A.,
RA   Martin M.F., Mitchell W.J.;
RT   "The xylose isomerase-encoding gene (xylA) of Clostridium
RT   thermosaccharolyticum: cloning, sequencing and phylogeny of XylA enzymes";
RL   Gene 141(1):97-101(1994).
XX
RN   [2]
RP   1-1488
RA   Meaden P.G.;
RT   ;
RL   Submitted (15-APR-1992) to the EMBL/GenBank/DDBJ databases.
RL   Philip G. Meaden, Department of Biological Sciences, Heriot-Watt
RL   University, Edinburgh, UK
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1488
FT                   /organism="Thermoanaerobacterium thermosaccharolyticum"
FT                   /strain="NCIB 9385"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="pUC19 library of J. Aduse-Opoku"
FT                   /db_xref="taxon:1517"
FT   -10_signal      85..90
FT                   /gene="xylA"
FT   RBS             123..128
FT                   /gene="xylA"
FT   CDS             136..1455
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="xylA"
FT                   /EC_number="5.3.1.5"
FT                   /note="putative gene product has significant similarity to
FT                   xylose isomerases from other clostridia"
FT                   /db_xref="GOA:P29441"
FT                   /db_xref="HSSP:1A0C"
FT                   /db_xref="InterPro:IPR018115"
FT                   /db_xref="UniProtKB/Swiss-Prot:P29441"
FT                   /citation=[1]
FT                   /protein_id="AAA79035.1"
FT                   /translation="MSKYFEKVSKIKYEGPKSNNPYAFKFYNPEEVIDGKTMEEHLRFS
FT                   IAYWHTFTADGTDQFGKATMQRPWNHLTDPMDIAKARVEAAFEFFDKINAPFFCFHDRD
FT                   IAPEGDTLRETNKNLDIIVAMIKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNADVF
FT                   AYSAAQVKKALEITKELGGQNYVFWGGREGYETLLNTDMELELDNFARFLHMAVDYAKE
FT                   IGFEGQFLIEPKPKEPTKHQYDFDVANVLAFLRKYDLDKYLKVNIEANHATLAAHDFQH
FT                   ELRYARINGVLGSIDANTGDMLLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDA
FT                   KVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDAEFDKFIEERYASYKDGIGADIV
FT                   SGKADFKSLEKYALEHSEIVTNQVDKKCLNQYSIQYLFTE"
XX
SQ   Sequence 1488 BP; 526 A; 236 C; 320 G; 406 T; 0 other;
     aattcgcatt ggtttgacgt gggcttttat tttttttaat aattttttat tttaaagaag        60
     gatttttcaa ttttgtgtag aatatataat atataagttt gttggctaaa caaacaataa       120
     aaaggaggac ataagatgag caaatatttt gaaaaagtat caaaaattaa atatgaagga       180
     cctaaatcaa ataatcctta tgcatttaaa ttctacaatc cagaggaagt aatcgatgga       240
     aagacaatgg aggaacatct tcgcttttct atagcttact ggcacacgtt tacagcagat       300
     gggacagacc aattcggaaa agcaacaatg caaaggccgt ggaatcacct tacagatcct       360
     atggacatag caaaggctag agttgaagcg gcatttgagt tttttgacaa aattaatgca       420
     cctttcttct gcttccatga cagagatata gcaccagaag gtgatacatt aagagagacc       480
     aataaaaacc tggatatcat cgttgccatg ataaaggatt acttgaagac cagcaagacg       540
     aaagttttgt ggggcactgc aaacctattc tcaaatccga gatttgtaca tggcgcatca       600
     acatcctgca atgctgatgt ttttgcatat tctgcagcgc aagtcaaaaa agcccttgag       660
     attactaagg agcttggagg acaaaactac gtattctggg gcggaagaga aggatacgag       720
     acactcctta atacagatat ggagttagag cttgataatt ttgcaagatt tctacacatg       780
     gcagttgatt atgcaaaaga aatcggcttt gaaggacaat ttttgattga gccgaagccg       840
     aaagaaccta caaaacatca atacgacttt gatgtagcaa atgttttggc attcttaaga       900
     aaatacgacc ttgataaata tttgaaagtg aatatagaag ctaatcatgc aacattagca       960
     gctcacgact tccaacatga gctaagatac gcaaggataa acggagtatt agggtcaatt      1020
     gatgcaaata caggcgacat gcttttggga tgggatacgg accagttccc gacagatata      1080
     cgcatgacga cacttgctat gtacgaagtc ataaagatgg gcggatttga caaaggtgga      1140
     ctcaacttcg acgcaaaagt cagaagagcc tcatttgagc ctgaagatct tttcttagga      1200
     catattgcag gtatggatgc ttttgcaaaa ggcttcaaag tggcttataa gcttgtaaaa      1260
     gatgcagaat ttgacaagtt cattgaagag agatatgcaa gctacaaaga tggcattggc      1320
     gcagatattg taagtggtaa agcagatttc aagagcttgg agaaatatgc attagagcat      1380
     agcgagattg taacaaatca ggtagacaag aaatgcttga atcaatactc aattcagtat      1440
     ttatttacag aataatgaaa catgaggggg gataaatgtt tcattatt                   1488
//