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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   M88062; SV 1; linear; genomic DNA; STD; INV; 1178 BP.
XX
AC   M88062;
XX
DT   15-MAR-1992 (Rel. 31, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 14)
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DE   Giardia intestinalis glyceraldehyde 3-phosphate dehydrogenase (gap1) gene,
DE   complete cds.
XX
KW   .
XX
OS   Giardia intestinalis
OC   Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia.
XX
RN   [1]
RP   1-1178
RX   DOI; 10.1111/j.1550-7408.1996.tb03997.x
RX   PUBMED; 8768438.
RA   Rozario C., Morin L., Roger A.J., Smith M.W., Muller M.;
RT   "Primary structure and phylogenetic relationships of
RT   glyceraldehyde-3-phosphate dehydrogenase genes of free-living and parasitic
RT   diplomonad flagellates";
RL   J Eukaryot Microbiol 43(4):330-340(1996).
XX
RN   [2]
RP   196-1092
RA   Smith M.W., Doolittle R.F.;
RT   "Evolution of early diverging eukaryotes based on their glyceraldehyde
RT   3-phosphate dehydrogenase sequences";
RL   Unpublished.
XX
RN   [3]
RP   196-1092
RA   Smith M.W.;
RT   ;
RL   Submitted (12-MAR-1992) to the EMBL/GenBank/DDBJ databases.
RL   Michael W. Smith, Science Applications International Corporation, National
RL   Cancer Institute, Frederick Cancer Research and Development Center, P.O.Box
RL   B, Frederick, MD 21702-1201, USA
XX
RN   [4]
RP   1-1178
RA   Muller M.;
RT   ;
RL   Submitted (25-APR-1995) to the EMBL/GenBank/DDBJ databases.
RL   Miklos Muller, The Rockefeller University, 1230 York Avenue, New York, NY
RL   10021-6399, USA
XX
CC   On May 26, 1995 this sequence version replaced gi:159104.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1178
FT                   /organism="Giardia intestinalis"
FT                   /strain="WB"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="library of F.D. Gillin and S.B. Aley"
FT                   /clone="C6"
FT                   /db_xref="taxon:5741"
FT   CDS             157..1167
FT                   /codon_start=1
FT                   /gene="gap1"
FT                   /product="glyceraldehyde 3-phosphate dehydrogenase"
FT                   /EC_number="1.2.1.12"
FT                   /note="GAPDH"
FT                   /db_xref="GOA:P53429"
FT                   /db_xref="InterPro:IPR000173"
FT                   /db_xref="InterPro:IPR006424"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="InterPro:IPR020828"
FT                   /db_xref="InterPro:IPR020829"
FT                   /db_xref="InterPro:IPR020830"
FT                   /db_xref="InterPro:IPR020831"
FT                   /db_xref="InterPro:IPR020832"
FT                   /db_xref="UniProtKB/Swiss-Prot:P53429"
FT                   /protein_id="AAB18421.1"
FT                   /translation="MPIRLGINGFGRIGRMALRASLNIDGVQVVAINDPFTDCEYMEYM
FT                   LKYDTVHGRFDGTIAHSEDSITVNGNKISVFKSMKPEEIPWGKTQVDIVLECTGRFTTK
FT                   KDAELHITGGCKRVIISAPSADAPMFVCGCNLETYDPSTMKVISNASCTTNCLAPLAMV
FT                   VNKKFGIKEGLMTTVHAVTATQLPVDGPSKKDWRGGRSCGANVIPSSTGAAKAVGKVLP
FT                   ALNGKLTGMAFRVPVPDVSVVDLTCTLEKDATYDEICAEIKRGSENELKGIMTYTNEDV
FT                   VSSDFLSTTSTCNFDSKAGIMLNSRFVKLVAWYDNEFGYANKLVELAKYVGSKGC"
FT   variation       495
FT                   /gene="gap1"
FT                   /replace="a"
FT                   /citation=[2]
FT   variation       795..796
FT                   /gene="gap1"
FT                   /replace="gc"
FT                   /citation=[2]
FT   variation       960
FT                   /gene="gap1"
FT                   /replace="a"
FT                   /citation=[2]
XX
SQ   Sequence 1178 BP; 277 A; 334 C; 316 G; 251 T; 0 other;
     tgatgaatga tcattgctaa tgagcctcaa gtgaggtaaa tccggtctgc agcctgtatt        60
     cctggaactt actcctgcta atcttttcta aagccacctg aatgtccaag tattctgagt       120
     gaaaaaactt aacacagggc tgcccaaaaa tctaaaatgc ctattcgcct cggaatcaac       180
     gggttcggcc gcatcggcag gatggccctg agggcgtctc tgaacatcga cggcgtccag       240
     gttgtcgcga tcaacgaccc cttcacggac tgtgagtaca tggagtacat gctcaagtac       300
     gatacggtgc acgggcgctt tgacggcacc atcgcccact ctgaagactc cataacggtc       360
     aatgggaaca agatctctgt cttcaagtct atgaagcccg aggagatccc atggggcaag       420
     acccaggtgg acattgtgct cgagtgtaca ggtcgcttta caacgaagaa ggatgctgag       480
     ctccatatca ccggcggctg caagcgtgtc atcatctccg ctccgtcggc ggacgcccct       540
     atgttcgtct gcggttgtaa cctcgagacg tacgatccga gcacgatgaa ggtcatctcc       600
     aacgcctcct gcacgacgaa ctgccttgct cctcttgcga tggttgtcaa taagaagttt       660
     ggtatcaagg agggcctcat gaccaccgtc cacgccgtca cggccaccca gctcccagtg       720
     gacgggccgt ccaagaagga ctggcgtggc ggccgtagct gcggtgctaa cgttatcccg       780
     tccagcaccg gggccgcaaa ggctgtcggg aaggtccttc ccgcgctcaa cggaaagctt       840
     accggtatgg cctttcgtgt ccctgtccca gacgtctctg tcgtcgacct gacctgtact       900
     cttgagaagg acgcaacgta cgatgagatc tgcgctgaga tcaagcgggg ctctgaaaac       960
     gagctcaagg ggatcatgac ctacactaac gaggacgtcg tgagcagcga cttcctctca      1020
     accaccagca cgtgcaactt cgacagcaag gctggcatca tgctcaacag caggttcgtt      1080
     aagctggttg cctggtacga caacgagttc ggctatgcta acaagcttgt tgaactagca      1140
     aagtacgtcg ggtccaaggg ctgctaagcg caaccagt                              1178
//
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