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EBI DbfetchID M86348; SV 1; linear; genomic DNA; STD; PRO; 5700 BP. XX AC M86348; XX DT 19-MAY-1992 (Rel. 31, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 14) XX DE Pseudomonas sp. LB400 biphenyl dioxygenase (bphA), biphenyl dioxygenase DE (bphE), biphenyl dioxygenase (bphF) and biphenyl dioxygenase (bphG)s, DE complete cds, and dihydrodiol dehydrogenase (bphB), partial cds. XX KW . XX OS Burkholderia xenovorans OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Burkholderiaceae; Burkholderia. XX RN [1] RP 1-5700 RX PUBMED; 1569021. RA Erickson B.D., Mondello F.J.; RT "Nucleotide sequencing and transcriptional mapping of the genes encoding RT biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading RT enzyme in Pseudomonas strain LB400"; RL J. Bacteriol. 174(9):2903-2912(1992). XX RN [2] RP 1-5700 RA Erickson B.D.; RT ; RL Unpublished. XX CC On Aug 16, 1993 this sequence version replaced gi:151082. XX FH Key Location/Qualifiers FH FT source 1..5700 FT /organism="Burkholderia xenovorans" FT /strain="LB400" FT /mol_type="genomic DNA" FT /db_xref="taxon:36873" FT mRNA 523..>5700 FT /note="alternate transcription site" FT /experiment="experimental evidence, no additional details FT recorded" FT CDS 611..1348 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 0" FT /db_xref="GOA:P37335" FT /db_xref="InterPro:IPR000524" FT /db_xref="InterPro:IPR011711" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/Swiss-Prot:P37335" FT /protein_id="AAB63424.1" FT /translation="MNARTPNSLTMGGDKSFADASPVPIANVRSLIEATFQRLRADIVE FT GRLAAGSRLAIEDLKSRYEVSGGTVREALSLLVANNLVQTQAQRGFHVTPMSLDDMRDL FT AATRIALECEALRQSVLNGDAEWEARVVSSYHRLSLLDERTMRDPVHLFNQWEQANRDF FT HEALISACSSAWTQRFLSILYLQMERYRRLTAMHNRPARNVHEEHLALRDSALARDAER FT CTELLRMHIESSISVVRQFGLLR" FT mRNA 1370..>5700 FT /note="alternate transcription site" FT /experiment="experimental evidence, no additional details FT recorded" FT CDS 1439..2818 FT /codon_start=1 FT /transl_table=11 FT /gene="bphA" FT /standard_name="iron sulfur protein" FT /product="biphenyl dioxygenase" FT /note="large subunit of the terminal dioxygenase component" FT /db_xref="GOA:P37333" FT /db_xref="InterPro:IPR001663" FT /db_xref="InterPro:IPR015879" FT /db_xref="InterPro:IPR015881" FT /db_xref="InterPro:IPR017941" FT /db_xref="UniProtKB/Swiss-Prot:P37333" FT /protein_id="AAB63425.1" FT /translation="MSSAIKEVQGAPVKWVTNWTPEAIRGLVDQEKGLLDPRIYADQSL FT YELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRG FT MRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDKKEGDCGFDKAEWGPLQA FT RVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKF FT AAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEP FT GSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIR FT IWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGL FT RGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLK FT P" FT CDS 2936..3502 FT /codon_start=1 FT /transl_table=11 FT /gene="bphE" FT /standard_name="iron sulfur protein" FT /product="biphenyl dioxygenase" FT /note="small subunit of the terminal dioxygenase component" FT /db_xref="GOA:P37334" FT /db_xref="InterPro:IPR000391" FT /db_xref="UniProtKB/Swiss-Prot:P37334" FT /protein_id="AAB63426.1" FT /translation="MTNPSPHFFKTFEWPSKAAGLELQNEIEQFYYREAQLLDHRAYEA FT WFALLDKDIHYFMPLRTNRMIREGELEYSGDQDLAHFDETHETMYGRIRKVTSDVGWAE FT NPPSRTRHLVSNVIVKETATPDTFEVNSAFILYRNRLERQVDIFAGERRDVLRRADNNL FT GFSIAKRTILLDASTLLSNNLSMFF" FT CDS 3540..3959 FT /codon_start=1 FT /transl_table=11 FT /note="iron sulfur protein; ORF 1" FT /db_xref="InterPro:IPR009310" FT /db_xref="UniProtKB/Swiss-Prot:P0C1T3" FT /protein_id="AAB63427.1" FT /translation="MKNARLFLIAIGVFYIINLIGTLPFSTLGLFGRMYPGVELHVGAP FT IFTLLQDAWAVVGLQLGAIGAVALWGARDPGRYRAVIPVVIATEVVDGLWDFYSIVWSH FT EALWFGLVTLVIHVLWIGWGLHAWRALASKSLRTL" FT CDS 4034..4363 FT /codon_start=1 FT /transl_table=11 FT /gene="bphF" FT /standard_name="iron sulfur protein" FT /product="biphenyl dioxygenase" FT /note="ferredoxin component of biphenyl dioxygenase" FT /db_xref="GOA:P37332" FT /db_xref="InterPro:IPR017941" FT /db_xref="PDB:1FQT" FT /db_xref="UniProtKB/Swiss-Prot:P37332" FT /protein_id="AAB63428.1" FT /translation="MKFTRVCDRRDVPEGEALKVESGGTSVAIFNVDGELFATQDRCTH FT GDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDNDVLVDFEA FT GYLAP" FT CDS 4360..5586 FT /codon_start=1 FT /transl_table=11 FT /gene="bphG" FT /standard_name="iron sulfur protein" FT /product="biphenyl dioxygenase" FT /note="reductase component of biphenyl dioxygenase" FT /db_xref="GOA:P37337" FT /db_xref="InterPro:IPR001327" FT /db_xref="InterPro:IPR004099" FT /db_xref="InterPro:IPR013027" FT /db_xref="InterPro:IPR016156" FT /db_xref="UniProtKB/Swiss-Prot:P37337" FT /protein_id="AAB63429.1" FT /translation="MIDTIAIIGAGLAGSTAARALRAQGYEGRIHLLGDESHQAYDRTT FT LSKTVLAGEQPEPPAILDSAWYASAHVDVQLGRRVSCLDLANRQIQFESGAPLAYDRLL FT LATGARARRMAIRGGDLAGIHTLRDLADSQALRQALQPGQSLVIVGGGLIGCEVATTAR FT KLSVHVTILEAGDELLVRVLGHRTGAWCRAELERMGVRVERNAQAARFEGQGQVRAVIC FT ADGRRVPADVVLVSIGAEPADELARAAGIACARGVLVDATGATSCPEVFAAGDVAAWPL FT RQGGQRSLETYLNSQMEAEIAASAMLSQPVPAPQVPTSWTEIAGHRIQMIGDAEGPGEI FT VVRGDAQSGQPIVLLRLLDGCVEAATAINATREFSVATRLVGTRVSVSAEQLQDVGSNL FT RDLLKAKPN" FT CDS 5633..>5700 FT /codon_start=1 FT /transl_table=11 FT /gene="bphB" FT /product="dihydrodiol dehydrogenase" FT /note="amino terminus of the dihyrodiol dehydrogenase" FT /db_xref="GOA:P47227" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR017711" FT /db_xref="PDB:1BDB" FT /db_xref="UniProtKB/Swiss-Prot:P47227" FT /protein_id="AAB63430.2" FT /translation="MKLKGEAVLITGGASGLGRALV" XX SQ Sequence 5700 BP; 1107 A; 1678 C; 1801 G; 1114 T; 0 other; gaattccgcg aagaacacca gttggccgtg cggcgtggcc gccgcacctt cgtcccagcg 60 cacgtgcatg cgcccgccca gcgtgtccac gatctgcggc tggacgggct catggcctgc 120 ccttggacgc gccgccagcg ccttgcgtct tgcttcaccc atcgggtgag tgtgccaaaa 180 ccgcgcaaag ccgcaactgg actggctcag cgcccgatca cggtcgagca actgccggat 240 ttaggatcat ccaaaacgat gtgggagcgg ctgaaacccg tcagggatcg cccgaaccgc 300 aagtcgtgtc aagttccacc tgtacctgat cctggatttg tacagccgca agatcgtggg 360 tgccgaggtg cacgacagcg acgaatctgt gcatgccgtg catctggtgc ggcgcaccgc 420 actggccgag ggcatcgcag cgatggacac caaacccgta ctaagacctt tcctagggtt 480 ttcactcagg tatggatgtc gaatgtcgat aataatatca acattatgac gagccacttg 540 ctatcgaagc ctgattcagt ccgcgctgaa atgtggggaa attttctgta atgaccaggt 600 gagaaatgca atgaatgcga gaactccaaa cagcctcacc atgggaggcg acaagtcatt 660 tgcggatgcg tcgccggtgc ccatcgcgaa cgtgcgcagc ctgattgagg cgacgtttca 720 gcggttgcgg gcggacatcg tggaggggcg actcgctgct ggctccagac tcgccattga 780 agatctcaag tcgcgctatg aggttagcgg cgggaccgtg cgggaggcgc tttccctgct 840 ggtggccaat aacctggtgc agacacaggc ccagcgtgga tttcatgtga cccccatgtc 900 tctggatgac atgcgtgatc tggccgccac gcggatcgcg cttgagtgcg aagcgctgcg 960 ccaaagtgtg ctgaatggcg acgccgaatg ggaggcgcgg gttgtcagtt cgtatcaccg 1020 gctctcgctc ctcgacgagc gcacgatgcg cgatccggtt cacttgttca atcagtggga 1080 gcaagccaac cgcgactttc acgaagccct gatctcagcc tgttcatccg cctggaccca 1140 gcggttcctg tctatcctgt atttgcaaat ggagcgctac cgccgattga cggcgatgca 1200 caaccggcct gccagaaacg tgcacgagga gcatctggcg cttcgtgaca gcgcgctcgc 1260 gcgtgatgcc gagcgctgta ctgagttgtt gcggatgcat attgagtcat caatttcggt 1320 ggttcggcaa ttcggtttgt tgcggtgacg ccaacatcgc aggtatcttt tttgtgtgat 1380 ggaagaggtt ggtatttttt ccgccctgcc aagggcattt caacggagac gttaaatcat 1440 gagttcagca atcaaagaag tgcagggagc ccctgtgaag tgggttacca attggacgcc 1500 ggaggcgatc cgggggttgg tcgatcagga aaaagggctg cttgatccac gcatctacgc 1560 cgatcagagt ctttatgagc tggagcttga gcgggttttt ggtcgctctt ggctgttact 1620 tgggcacgag agtcatgtgc ctgaaaccgg ggacttcctg gccacttaca tgggcgaaga 1680 tccggtggtt atggtgcgac agaaagacaa gagcatcaag gtgttcctga accagtgccg 1740 gcaccgcggc atgcgtatct gccgctcgga cgccggcaac gccaaggctt tcacctgcag 1800 ctatcacggc tgggcctacg acatcgccgg caagctggtg aacgtgccgt tcgagaagga 1860 agccttttgc gacaagaaag aaggcgactg cggctttgac aaggccgaat ggggcccgct 1920 ccaggcacgc gtggcaacct acaagggcct ggtctttgcc aactgggatg tgcaggcgcc 1980 agacctggag acctacctcg gtgacgcccg cccctatatg gacgtcatgc tggatcgcac 2040 gccggccggg actgtggcca tcggcggcat gcagaagtgg gtgattccgt gcaactggaa 2100 gtttgccgcc gagcagttct gcagtgacat gtaccacgcc ggcaccacga cgcacctgtc 2160 cggcatcctg gcgggcattc cgccggaaat ggacctctcc caggcgcaga tacccaccaa 2220 gggcaatcag ttccgggccg cttggggcgg gcacggctcg ggctggtatg tcgacgagcc 2280 gggctcactc ctggcggtga tgggccccaa ggtcacccag tactggaccg agggtccggc 2340 tgccgagctt gcggaacagc gcctggggca caccggcatg ccggttcgac gcatggtcgg 2400 ccagcacatg acgatcttcc cgacctgttc attcctgccc accttcaaca acatccggat 2460 ctggcacccg cgtggtccca atgaaatcga ggtgtgggcc ttcaccctgg tcgatgccga 2520 cgccccggcg gagatcaagg aagaatatcg ccggcacaac atccgcaact tctccgcagg 2580 cggcgtgttt gagcaggacg atggcgagaa ctgggtggag atccagaagg ggctacgtgg 2640 gtacaaggcc aagagccagc cgctcaatgc ccagatgggc ctgggtcggt cgcagaccgg 2700 tcaccctgat tttcctggca acgtcggcta cgtctacgcc gaagaagcgg cgcggggtat 2760 gtatcaccac tggatgcgca tgatgtccga gcccagctgg gccacgctca agccctgatc 2820 aagacgcaat cgttagatct gtcaaccgga agaattcaac atggtgggct ggacgtgcat 2880 gtgcagacgg cgcgccgagg ttccgtcccc tgatatttac ttggagataa ctgttatgac 2940 aaatccatcc ccgcattttt tcaaaacatt tgaatggcca agcaaggcgg ctggccttga 3000 gttgcagaac gagatcgagc agttctacta ccgcgaagcg cagttgcttg accaccgggc 3060 ctacgaggcc tggtttgccc tgctggacaa agatatccac tacttcatgc cgctgcgcac 3120 caatcgcatg atccgggagg gcgagctgga atattccggc gaccaggatt tagcccattt 3180 cgatgaaacc catgaaacca tgtacgggcg catccgcaag gtgacctcgg acgtgggctg 3240 ggcggagaac ccgccttccc gcacgcgcca cctggtctcc aacgtcatcg tcaaggagac 3300 ggccacgccg gataccttcg aggtcaattc cgcattcatc ctgtaccgca atcggcttga 3360 gcgccaggtc gacatcttcg cgggcgaacg ccgggacgtg ctgcgccgcg ccgacaacaa 3420 ccttggtttc agcatcgcca agcgcaccat cctgctcgac gccagtacct tgctgtcgaa 3480 caacctgagc atgttcttct agcccagcac gctgaaccgg cctcaatgag gatgctgcca 3540 tgaaaaatgc aagactgttt ttgatcgcca tcggcgtctt ctacatcatc aacctcattg 3600 gcacgcttcc cttcagcacg ttgggcttgt ttggcaggat gtatccaggc gtagaactgc 3660 acgtgggtgc gccgattttc accctgctgc aggatgcctg ggcggtggtc ggtctccagt 3720 tgggcgccat cggggccgtc gctttgtggg gcgcccgcga tccgggccgt tatcgggccg 3780 ttattccagt ggtcatcgca acggaagtgg tcgatggcct ctgggatttt tacagcatcg 3840 tgtggagcca cgaagccttg tggttcgggc ttgtcacgct ggtgatccat gtgctgtgga 3900 ttggctgggg cctgcatgcc tggcgtgccc tggcgtcgaa atcgctgagg acactttgaa 3960 ttactcttca gccaccaaca gtgactgttc gccccaggcg atttaaccct tttaactaat 4020 tacaagaagc gttatgaaat ttaccagagt ttgtgatcga agagatgtgc ccgaaggcga 4080 agccctgaag gtcgaaagtg gaggcacctc cgtcgcgatt ttcaatgtgg atggcgagct 4140 gttcgcaaca caggaccgct gcacccacgg cgactggtcc ctgtccgatg gcggctatct 4200 tgaaggtgac gtggtggaat gctcactgca catggggaag ttttgcgttc gcacgggcaa 4260 ggtcaaatca ccgccgccct gtgaggcact gaagatattt ccgatccgca tcgaagacaa 4320 tgacgtgctg gtcgacttcg aagccgggta tctggcgcca tgatcgacac catcgccatc 4380 atcggcgccg gcctggccgg ttcgacggct gcgcgcgcac tgcgcgccca gggatacgag 4440 gggcgcatcc acctgctcgg ggatgagtcg catcaggcct atgaccggac cacgctgtcc 4500 aagacggtgc tggcgggcga gcagcccgag ccgcctgcaa tcctggacag cgcctggtac 4560 gcatcggccc atgtggatgt ccagctcggg cgacgggtga gttgcctgga tctggccaac 4620 cgccagattc agtttgaatc gggcgccccg ctggcctacg accggctgct gctggccacc 4680 ggcgcgcgcg cccggcgcat ggcgattcgg ggtggcgacc tggcaggcat ccataccttg 4740 cgagacctcg ccgacagcca ggcgctgcgg caggcgctgc aaccgggcca gtcgctggtc 4800 atcgtcggcg gaggcctgat cggttgcgag gtggcgacca ccgcccgcaa gctgagtgtc 4860 catgtcacga ttctggaagc cggcgacgag ttgctggtgc gcgtgctggg tcaccggacc 4920 ggggcatggt gtcgggccga actggaacgc atgggtgtcc gcgtggagcg caatgcacag 4980 gccgcgcgct tcgaaggcca ggggcaggtg cgcgccgtga tctgcgccga cgggcgccgg 5040 gtgcccgccg atgtggtctt ggtcagcatt ggcgccgagc cggcggacga gctggcccgt 5100 gccgctggca tcgcctgcgc gcgcggcgtg ctggtcgacg ccaccggcgc cacctcgtgt 5160 ccagaggtgt tcgccgccgg tgacgtcgcc gcctggccgc tgcgtcaagg gggccagcgc 5220 tcgctggaga cctacctgaa cagccagatg gaggccgaaa tcgcggccag cgccatgttg 5280 agtcagcccg tgccggcgcc ccaggtgccg acctcgtgga cggagattgc aggccaccgc 5340 atccagatga ttggcgatgc cgaagggccc ggcgagatcg tcgtacgcgg cgacgcccag 5400 agcggccagc caatcgtgtt gctcaggctg cttgatggct gcgtcgaggc cgcgacggcg 5460 atcaatgcca ccagggaatt ttctgtggcg acccgactgg tcggcacccg ggtttctgtt 5520 tccgccgagc aactgcagga cgtcggctcg aacctgcggg atttactcaa agccaaaccg 5580 aattgatgcg catgaccggc gaatcgcttt aacaataaag gggattggaa aaatgaaact 5640 gaaaggtgaa gcggtactga tcacgggggg cgcctccgga ttagggcgcg cgctcgtgga 5700 // |
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