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EBI DbfetchID M80599; SV 1; linear; genomic DNA; STD; PRO; 7499 BP. XX AC M80599; M86935; XX DT 23-JAN-1992 (Rel. 30, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 9) XX DE Escherichia coli lipopolysaccharide core biosynthesis protein operon (rfaQ, DE rfaP, rfaG, rfaS, rfaB, rfaI, and rfaJ) genes, complete cds. XX KW lipopolysaccharide core biosynthesis protein; rfaB gene; rfaG gene; KW rfaI gene; rfaJ gene; rfaP gene; rfaQ gene; rfaS gene. XX OS Escherichia coli OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Escherichia. XX RN [1] RP 1-7499 RX PUBMED; 1732225. RA Parker C.T., Pradel E., Schnaitman C.A.; RT "Identification and sequences of the lipopolysaccharide core biosynthetic RT genes rfaQ, rfaP, and rfaG of Escherichia coli K-12"; RL J. Bacteriol. 174(3):930-934(1992). XX RN [2] RP 1-7499 RX PUBMED; 1624461. RA Pradel E., Parker C.T., Schnaitman C.A.; RT "Structures of the rfaB, rfaI, rfaJ, and rfaS genes of Escherichia coli RT K-12 and their roles in assembly of the lipopolysaccharide core"; RL J. Bacteriol. 174(14):4736-4745(1992). XX FH Key Location/Qualifiers FH FT source 1..7499 FT /organism="Escherichia coli" FT /strain="K-12" FT /mol_type="genomic DNA" FT /db_xref="taxon:562" FT CDS 444..1478 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaQ" FT /product="lipopolysaccharide core biosynthesis protein" FT /db_xref="GOA:P25742" FT /db_xref="InterPro:IPR011916" FT /db_xref="UniProtKB/Swiss-Prot:P25742" FT /citation=[1] FT /protein_id="AAA24081.1" FT /translation="MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEIN FT ALYGISNKGAGTFDKIKNVLSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQL FT YGHRQHGIWKKSFTHLAPIHGTHIVERNLSVLEPLGITDFYTDTTMSYAEDCWKKMRRE FT LDALGVKDHYVVIQPTARQIFKCWDNDKFSKVIDALQQRGYQVVLTCGPSADDLACVDE FT IARGCETKPITGLAGKTRFPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDH FT VFWRPWTENIIQFWAGNYQKMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADR FT NAQL" FT CDS 1475..2599 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaG" FT /product="lipopolysaccharide core biosynthesis protein" FT /db_xref="GOA:P25740" FT /db_xref="InterPro:IPR001296" FT /db_xref="PDB:2IV7" FT /db_xref="UniProtKB/Swiss-Prot:P25740" FT /citation=[1] FT /protein_id="AAA24082.1" FT /translation="MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC FT PKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYA FT EKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQ FT ILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLP FT ESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQE FT AAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPL FT RMAWAENARHYADTQDLYSLPEKAADIITGGLDG" FT CDS 2592..3389 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaP" FT /product="lipopolysaccharide core biosynthesis protein" FT /db_xref="GOA:P25741" FT /db_xref="InterPro:IPR010440" FT /db_xref="UniProtKB/Swiss-Prot:P25741" FT /citation=[1] FT /protein_id="AAA24083.1" FT /translation="MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGK FT SYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNP FT LTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDC FT YICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRD FT IWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL" FT CDS 3426..4361 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaS" FT /product="lipopolysaccharide core biosynthesis protein" FT /db_xref="GOA:P27126" FT /db_xref="UniProtKB/Swiss-Prot:P27126" FT /citation=[2] FT /protein_id="AAA24084.1" FT /translation="MTIYFINWVADYELKMIQYLKKKYKIKNITTPKKYNWINKKISKI FT GMDNAWLGRLFIKHYLNDIKKDDIIIINDSVVNKGINKQILKNINCHKVLLLRNTVGED FT FILDNANYFDIIYDFEHRFIGNEKIKAIEQFFPIGMDEIRNYSLSDKNNSQPICFFLGR FT DKGRLQIINELAERLTTLGCKLDFNVVKDKTSSTTSKYLIEKQISYEENIRRTLNANII FT VDITKENQSGWTLRILEALFFNKKLITNNINVFGSEIYSESRFFIIGHDDWDKLEYFIN FT SSVKPMDYDSLYKFSPDKMMSTIVSDFIDK" FT CDS 4375..5484 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaB" FT /product="lipopolysaccharide core biosynthesis protein" FT /db_xref="GOA:P27127" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/Swiss-Prot:P27127" FT /citation=[2] FT /protein_id="AAA24085.1" FT /translation="MSFTQLMRVSMKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSE FT MFFFCRNDKMDKGWLEGIKYSCSFSNIRLGFLRRAKHIHALSKWLQEYQPDIVICIDVI FT SCLFAAKARKKSGIDMPVFSWPHFSLDHKKHAEYITCADYHLAISSGIKQQMINRGVAE FT STINVIFNPVETKDSVIPAPEEGETATFIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLH FT VLGDGSDFEKCQAYGRELNIDDRIVWYGWQQYPWELVQQDIEKVSALLLTSSFEGFPMT FT LLEALSWGIPCISADCVSGPADIIQPDVNGHLYQPGDIAGFVTLLNKYIAGEIHIEHEK FT IPASIDEFYQSKYYDRLHKVIISAISRRK" FT CDS 5484..6503 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaI" FT /product="lipopolysaccharide core biosynthesis protein" FT /db_xref="GOA:P27128" FT /db_xref="InterPro:IPR002495" FT /db_xref="UniProtKB/Swiss-Prot:P27128" FT /citation=[2] FT /protein_id="AAA24086.1" FT /translation="MQQVFFQETEFLNSVIDYDHKVETENLCLDIAYGTDKNFLFGCGI FT SIASILKYNEGSRLCFHIFTDYFGDDDRKYFDALALQYKTRIKIYLINGDRLRSLPSTK FT NWTHAIYFRFVIADYFINKAPKVLYLDADIICQGTIEPLINFSFPDDKVAMVVTEGQAD FT WWEKRAHSLGVAGIAKGYFNSGFLLINTAQWAAQQVSARAIAMLNEPEIIKKITHPDQD FT VLNMLLADKLIFADIKYNTQFSLNYQLKESFINPVTNDTIFIHYIGPTKPWHDWAWDYP FT VSQAFMEAKNASPWKNTALLKPNNSNQLRYSAKHMLKKHRYLKGFSNYLFYFIEKIKH" FT CDS 6543..7487 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaJ" FT /product="lipopolysaccharide core biosynthesis protein" FT /db_xref="GOA:P27129" FT /db_xref="InterPro:IPR013645" FT /db_xref="UniProtKB/Swiss-Prot:P27129" FT /citation=[2] FT /protein_id="AAA24087.1" FT /translation="MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVS FT ITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQV FT WSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQE FT KAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVL FT LKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSV FT KYYKIALENSPWKDDSPRDAKSIIEFKKDINIF" XX SQ Sequence 7499 BP; 2326 A; 1312 C; 1565 G; 2296 T; 0 other; atagtaaata gctgacttat ggatgtgctg gggattctat gtatttagct gtggctttac 60 cattactttt cccgtttttg acttaaatag cttcagtttg gtctgatctg ccgctacatc 120 ttcatttttt ttgtattttt atgcgattca ttgaaactcg gccccatttt caaatctaca 180 taggccgtac tgacattatc gaaatgctat tttttatcta tttgattttt atgattaaag 240 tatattttgt gtataaaaat cattcgggtc ggattgctgc gaaagaaatg atacactagc 300 acgtcaaagt aagtgcgtta tcagtattca ggtagctgtt gagcctgggg cggtagcgtg 360 cttttttctg cttaacttaa ccagacaatc acacaaaaga gtcgctagtg gaaaagccat 420 ttcgaaaaat cctggtcata aagatgcgat atcatgggga tatgttatta actactcctg 480 tcatcagtac gctcaagcag aattatcctg atgcaaaaat cgatatgctg ctttatcagg 540 acaccatccc tattttgtct gaaaacccgg aaattaatgc gctctatggg ataagcaata 600 aaggtgcggg aactttcgat aaaattaaaa atgtgctttc gttgataaaa actctgcgtg 660 cgaataatta tgacctggtc attaatctta cggatcagtg gatggtggcg ctgctggtac 720 gttgtttacc tgcacggatg aaaatatcgc aactttatgg tcatcggcag catggtattt 780 ggaaaaaaag cttcacacac ttagcgccaa tacacggtac acatattgtt gagcgtaatt 840 tatcggtcct tgagccatta ggtattaccg atttctacac cgacacaaca atgagttacg 900 ccgaagattg ctggaagaag atgcgccggg aattagatgc cctgggcgta aaagatcatt 960 atgttgtcat ccaaccgaca gcgcgtcaga tatttaagtg ttgggataac gataaatttt 1020 ctaaggttat cgatgcgctg caacagcgag gctatcaggt tgtgctaacc tgtgggccct 1080 cggcagatga tctcgcttgt gtagatgaga ttgcacgagg ttgcgaaaca aaacccatta 1140 ctggccttgc aggtaaaaca cgttttcctg aactgggtgc attaattgat catgcagtgc 1200 tttttattgg tgtggattct gcgccgggac atattgcagc ggcagtgaaa acgccagtca 1260 ttagtctatt tggtgcaacg gatcacgtat tctggcgtcc ctggaccgag aatattattc 1320 aattctgggc ggggaattat cagaaaatgc cgacccggca tgaacttgac cgcaacaaaa 1380 aatatctttc tgttatccca gcggaggatg tgatcgccgc tacggaaaag ctgttgccag 1440 aagatgcccc ttcagctgac aggaatgcac aattatgatc gtggcgtttt gtttatataa 1500 atattttcca tttggtgggc ttcaacgtga ctttatgcgc attgcatcaa cagttgccgc 1560 acggggccac catgttcggg tatatacaca gtcgtgggaa ggcgattgcc cgaaagcatt 1620 tgagcttatt caggtgccag ttaagtccca taccaaccat ggacgcaatg cagaatatta 1680 tgcctgggta caaaatcatc tcaaagagca tcccgcagat cgcgttgttg ggtttaataa 1740 gatgcctggc ctggatgttt attttgccgc tgatgtttgt tacgccgaga aagttgcgca 1800 agaaaaaggt tttttatatc gtttaacatc acgatatcgc cattatgccg catttgagcg 1860 agcgactttc gagcagggta aatcgacgaa acttatgatg ctgaccgata agcaaatcgc 1920 cgatttccag aagcattatc aaactgaacc tgaacgtttt caaattcttc ctcccggtat 1980 ttatccggac agaaaataca gtgagcaaat cccaaacagc cgtgaaattt atcgccagaa 2040 aaatggcata aaagagcaac aaaacttatt actgcaggtt ggatcagatt ttggccgtaa 2100 aggtgtagat cgctcaattg aagctttggc atcgttaccg gaatcattac gtcacaatac 2160 gcttttattt gttgttggtc aggataagcc gcgaaaattt gaagcgctgg cagaaaaact 2220 cggcgtgcgg agcaatgtgc atttcttctc cggtcgcaat gatgtgtcag aattaatggc 2280 agccgctgat ttattactgc atcccgctta tcaggaagcc gcgggtatcg ttcttctaga 2340 agcgatcact gctgggttac ctgttttaac aacagcggta tgtgggtacg cgcattatat 2400 tgcggatgcc aattgtggaa cggtcatcgc tgaacctttc tctcaggaac aattaaatga 2460 agttttacgt aaagcgttaa ctcagtcgcc attgcgaatg gcctgggcgg agaatgctcg 2520 ccattatgcc gatactcagg atttgtatag cttgccagaa aaagccgcgg atatcattac 2580 aggtggttta gatggttgaa ttaaaagagc cgcttgccac actttggcgt ggtaaagatg 2640 cttttgcaga ggtcaaaaaa ctgaacggcg aggtctttcg tgaactggag actcgtcgta 2700 cattacgctt tgaactgtcc gggaaaagct attttcttaa atggcacaag gggacgacat 2760 taaaagagat tataaaaaat ctactctcat tgcggatgcc cgttttgggc gcagacagag 2820 agtggcacgc tattcatcgc ctgagtgatg ttggcgttga tacaatgaag ggcattgggt 2880 ttggcgaaaa agggttaaat ccattaactc gcgcatcatt tattattacc gaagatctca 2940 ctcccacaat tagccttgaa gattattgtg ccgattgggc agtcaacccg cctgatatac 3000 gtgttaagcg tatgctgatc gcacgtgtag caactatggt gcgtaaaatg catactgcag 3060 ggataaatca ccgcgactgt tacatttgcc actttttgct tcatttgcca tttactggcc 3120 gggaagatga attaaaaatt tcagttatcg atctgcatcg ggcacagata cgtgcaaaag 3180 taccgcgccg ctggcgcgat aaagacctga ttggtttata tttctcatca atgaatattg 3240 gcctgacgca aagagatatc tggcgattta tgaaggttta ttttgggatg cctttacgca 3300 aaatattgtc tcttgaacag aatttattga acatggcaag cgttaaggcc gagcgtatta 3360 aagagcgaac acaacgcaaa ggattataaa aatatttatt agtatgtact ggaactaact 3420 ttattatgac tatttatttt ataaattggg ttgcagatta tgaattaaaa atgattcagt 3480 acctgaaaaa aaagtacaag ataaaaaata taacaacacc aaaaaaatat aactggatta 3540 ataaaaaaat atcaaaaata gggatggata atgcatggct ggggcgatta ttcatcaagc 3600 attacctcaa tgatattaaa aaagatgaca taattatcat taatgacagt gttgttaata 3660 aaggtatcaa taaacaaata ttaaaaaata ttaactgtca taaagttttg cttctaagaa 3720 atactgttgg cgaagatttt attcttgata acgcgaatta tttcgatatt atatatgatt 3780 ttgagcatag atttataggg aatgaaaaga tcaaggcaat agaacaattt tttcctatag 3840 gaatggatga aattagaaat tatagtttat ctgacaaaaa taacagccag ccaatatgtt 3900 ttttccttgg tcgtgataaa gggcgtcttc aaataattaa tgagttagcc gagagattaa 3960 caacactagg atgtaagcta gattttaatg ttgtcaaaga taagacatca tctacgactt 4020 caaagtattt gattgaaaaa caaatatctt atgaagagaa tattagaaga acattaaatg 4080 ctaatataat tgttgatata accaaagaaa accaatctgg ctggactctt cgtatacttg 4140 aggcactatt tttcaataaa aaattaatta ctaataatat aaatgtattt ggttcagaaa 4200 tctatagtga atctcgcttt tttataatag gtcatgatga ttgggataag ttagagtatt 4260 ttattaactc atctgttaaa ccaatggatt atgatagttt atataaattc agtccagata 4320 aaatgatgtc aacgattgtt tctgatttta tagacaaata aaaccgttaa aacagtgagt 4380 tttactcaat taatgagagt ttctatgaaa atagcgttta tcggcgaagc tgtttctgga 4440 tttggcggca tggaaactgt catccgtgat gttattacta ccttcaggca acaacatatc 4500 caaagtgaaa tgtttttctt ttgtcgtaat gacaaaatgg ataagggatg gctggaaggt 4560 attaaatact catgttcatt ttccaatatt cgtttaggtt ttttgcgtcg ggcgaaacat 4620 attcatgctc taagtaaatg gcttcaggag taccaaccag atatcgttat ttgtattgat 4680 gtgatctcct gcctgtttgc cgcaaaagca cgtaaaaaat caggaattga tatgccagta 4740 ttttcatggc cacatttttc tttagatcac aaaaaacatg ctgaatatat cacctgtgcc 4800 gactatcatt tagcaatcag ctctggcatt aaacagcaaa tgattaatcg aggtgtagca 4860 gaatcgacga taaatgttat ttttaatccc gtcgaaacta aagactcagt cattcccgcg 4920 cccgaggaag gtgaaacggc aacgtttatt tatgttgggc gtatgaaatt tgaaggccag 4980 aaaagagtta aagacctgct tgatggctta tcacaagcga aaggtaactg gaaactccat 5040 gtattgggtg atggctccga tttcgaaaaa tgccaggctt atggtagaga attaaatatt 5100 gatgatcgaa ttgtctggta tggttggcaa caatatccct gggaattggt ccagcaagat 5160 attgaaaaag tgagtgcgtt attgctcacg tcatcttttg aaggtttccc aatgacccta 5220 cttgaagcct tgtcgtgggg gattccttgt atcagtgccg attgtgtctc cgggcctgct 5280 gacattattc aacctgatgt caatggccat ctgtatcaac cgggagatat tgctggtttt 5340 gtaactcttc taaataaata tatagcaggt gaaattcata tcgaacatga aaaaattcct 5400 gcgtcgatcg atgaatttta ccaatcgaag tattacgata gattacataa ggtaattatt 5460 tctgctattt cccggaggaa ataatgcagc aggtgttttt ccaggaaact gagtttctta 5520 attcagttat tgattatgat cataaagtag aaacagaaaa tctttgtctg gacatcgctt 5580 atggaactga caaaaacttt ctatttggtt gcggaatttc gattgcttca atattaaaat 5640 ataatgaagg aagtcgattg tgtttccata tttttactga ttattttggt gatgatgatc 5700 gtaagtattt tgatgccctg gcgttgcagt ataaaaccag aattaaaata tatctgatta 5760 atggtgatcg actgcgctca ttgcctagca ctaagaattg gactcatgca atatattttc 5820 gttttgttat tgcagattac tttattaata aggcgcctaa agtcctttat ctggatgcag 5880 atatcatttg tcaggggact attgagccac taattaattt ctcatttcct gacgataaag 5940 tcgcaatggt tgttacagaa gggcaagctg actggtggga aaaacgcgcc cattcgttag 6000 gtgttgcggg aattgctaaa ggttacttta actccggttt tttattgatt aatactgccc 6060 aatgggcggc tcagcaggtt tctgcacgag ctattgcaat gctaaatgag ccagaaataa 6120 tcaaaaaaat aacacatcct gatcaggatg tgttaaatat gttgctggcg gataaactta 6180 ttttcgctga tattaaatat aacacccagt tcagcttaaa ttatcaactc aaagaaagct 6240 ttataaaccc agtaaccaac gatactattt ttatccatta tatcgggcca accaagccct 6300 ggcatgattg ggcctgggat tatcctgtat cacaagcctt tatggaggca aaaaatgctt 6360 cgccatggaa gaatacggcg ttgctgaaac cgaacaatag caatcaatta agatatagcg 6420 caaaacatat gcttaaaaag catagatatc taaaaggatt tagcaactat cttttttatt 6480 ttattgaaaa gataaagcat taaaactggg aaactataaa gtaatgatat aagggtagca 6540 ttgtggactc atttcctgcc atagagatag ataaagttaa agcctgggat tttcggctag 6600 ctaatataaa tacttctgaa tgtttaaatg ttgcctatgg tgtcgatgct aattatcttg 6660 atggtgtagg tgtttccatc acatcaattg tcctaaataa tcgacatatt aatcttgatt 6720 tttatattat tgctgatgtt tataatgatg gtttttttca aaaaattgca aagcttgcag 6780 agcaaaacca attaagaatc acgttatata gaattaacac tgataagctc cagtgcttgc 6840 cttgtacaca ggtctggtca agagcaatgt acttccgttt atttgcattt caattattgg 6900 gtttaacgct tgatcgtttg ctttatcttg atgcagatgt tgtttgtaaa ggcgatatta 6960 gccaactatt acatctgggt ttaaatggag cggttgctgc tgttgttaaa gatgttgagc 7020 caatgcaaga aaaggcggta tccaggttgt ctgatcctga attacttggg cagtacttta 7080 attccggtgt cgtttattta gacttaaaaa aatgggctga cgcaaaacta acagaaaaag 7140 cgttgtctat tcttatgagt aaagataatg tttataaata ccctgatcag gatgttatga 7200 atgtcttact gaaagggatg acattatttt tgcctcgtga gtacaataca atttatacaa 7260 ttaaaagtga attaaaagac aaaacacatc aaaactataa aaagctgatt acagaaagta 7320 ctcttcttat tcattataca ggtgcaacta aaccgtggca caaatgggca atttatccat 7380 cggtaaaata ctataaaata gctttagaaa attccccctg gaaagatgac tctccacgag 7440 atgcgaaatc aattattgaa tttaaaaaag atataaacat cttttagtgc aacatcatt 7499 // |
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