 |
|
EBI DbfetchID M73826; SV 1; linear; genomic DNA; STD; PRO; 4280 BP. XX AC M73826; XX DT 07-DEC-1991 (Rel. 30, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 8) XX DE Salmonella typhimurium rfaL, rfaK, and rfaZ genes, complete cds, and 3' DE ends of rfaC and rfaY genes. XX KW N-acetylglucosamine transferase; O-antigen ligase. XX OS Salmonella enterica subsp. enterica serovar Typhimurium OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Salmonella. XX RN [1] RP 1-4280 RX PUBMED; 1657881. RA MacLachlan P.R., Kadam S.K., Sanderson K.E.; RT "Cloning, characterization, and DNA sequence of the rfaLK region for RT lipopolysaccharide synthesis in Salmonella typhimurium LT2"; RL J. Bacteriol. 173(22):7151-7163(1991). XX FH Key Location/Qualifiers FH FT source 1..4280 FT /organism="Salmonella enterica subsp. enterica serovar FT Typhimurium" FT /map="79" FT /strain="LT2" FT /mol_type="genomic DNA" FT /db_xref="taxon:90371" FT CDS <1..315 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaC" FT /db_xref="GOA:P26469" FT /db_xref="InterPro:IPR011908" FT /db_xref="UniProtKB/Swiss-Prot:P26469" FT /protein_id="AAA27205.1" FT /translation="KLPWGAPHEEARAKRLAEGFDYVDVLPRMSLEEVARVLAGAKFVV FT SVDTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQMACCSPEQNLANLDATSVFGKIH FT " FT RBS 346..349 FT /gene="rfaL" FT CDS 355..1569 FT /codon_start=1 FT /transl_table=11 FT /gene="rfaL" FT /product="O-antigen ligase" FT /db_xref="GOA:P26471" FT /db_xref="InterPro:IPR007016" FT /db_xref="UniProtKB/Swiss-Prot:P26471" FT /protein_id="AAA27206.1" FT /translation="MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILM FT VITAIYQVSRSPKSFPPLFKNSVFYSVAVLSLILVYSILISPDMKESFKEFENTVLEGF FT LLYTLLIPVLLKDETKETVAKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISYAHR FT HMSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWA FT ILNRQWKLIGVGAILLAIIGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQGTAWI FT LIQENPIKGYGYGNDVYDGVYNKRVVDYPTWTFKESIGPHNTILYIWFSAGILGLASLV FT YLYGAIIRETASSTLRKVEISPYNAHLLLFLSFVGFYIVRGNFEQVDIAQIGIITGFLL FT ALRNR" FT terminator 1571..1608 FT /note="putative bidirectional transcription terminator (for FT rfaL and rfaK genes" FT CDS complement(1626..2771) FT /codon_start=1 FT /transl_table=11 FT /gene="rfaK" FT /product="N-acetylglucosamine transferase" FT /db_xref="GOA:P26470" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/Swiss-Prot:P26470" FT /protein_id="AAA27207.1" FT /translation="MIKKIIFTVTPIFSIPPRGAAAVETWIYQVAKRLSIPNAIACIKN FT AGYPEYNKINDNCDIHYIGFSKVYKRLFQKWTRLDPLPYSQRILNIRDKVTTQEDSVIV FT IHNSMKLYRQIRERNPNAKLVMHMHNAFEPELPDNDAKIIVPSQFLKAFYEERLPAAAV FT SIVPNGFCAETYKRNPQDNLRQQLNIAEDATVLLYAGRISPDKGILLLLQAFKQLRTLR FT SNIKLVVVGDPYASRKGEKAEYQKKVLDAAKEIGTDCIMAGGQSPDQMHNFYHIADLVI FT VPSQVEEAFCMVAVEAMAAGKAVLASKKGGISEFVLDGITGYHLAEPMSSDSIINDINR FT ALADKERHQIAEKAKSLVFSKYSWENVAQRFEEQMKNWFDK" FT RBS complement(2783..2785) FT /gene="rfaK" FT CDS complement(2872..3681) FT /codon_start=1 FT /transl_table=11 FT /gene="rfaZ" FT /db_xref="GOA:P26473" FT /db_xref="UniProtKB/Swiss-Prot:P26473" FT /protein_id="AAA27208.1" FT /translation="MGSVNFITHADVLQLIAKRTAEDCIIFLSGPTSRKTPLSLLRMKD FT VIAVNGSVQYLLNNNVKPFLYLLTDIRFLHRRREDFYNFSRNSQFTIVNLDVYEQASVD FT DQKYIEENCLIIRSFYRREKGGFLKKIKFNILKRVHKALLISVPLSKRGRLAGFCKDIS FT IGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTGSCPRFYDESTSPMPSELSKDLFKIL FT PFFTFMRKNVSDLNIFNLSDDTAIHYDIIPYITASELEDEIYYDKIV" FT RBS complement(3688..3690) FT /gene="rfaZ" FT CDS complement(3831..>4280) FT /codon_start=1 FT /transl_table=11 FT /gene="rfaY" FT /db_xref="GOA:P26472" FT /db_xref="InterPro:IPR009330" FT /db_xref="UniProtKB/Swiss-Prot:P26472" FT /protein_id="AAA27209.1" FT /translation="KLFHQTDRVRREGFAALNDFYLLAEIKTLRYVKTYVMIIEYIEGI FT ELVDMPEISDEVRGKIKQSIYSLHQHGMVSGDPHKGNFILQGNEIRIIDLSGKRPSRQR FT KAKDRIDLERHYGIKNNVRDIGFYLLIYKKKLRNFLRRIKGKEKR" XX SQ Sequence 4280 BP; 1277 A; 883 C; 825 G; 1295 T; 0 other; aagcttccct ggggcgcgcc tcatgaggag gcccgggcta aacgactggc cgaaggcttt 60 gactatgtgg atgtgttacc gcgcatgagc ctggaggagg tcgccagagt gctggctggc 120 gcaaaatttg tcgtatcggt tgataccggc ctgagccatc tcaccgccgc gctcgacaga 180 ccgaatatta cgctatatgg cccaacggac cctgggttaa ttggaggtta tgggaagaac 240 caaatggcat gctgctcacc agaacagaac ctggcgaatt tagatgccac aagcgtattt 300 ggaaagattc attaaagaga ctctgtctca tcccaaacct attgtggaga aaagatgcta 360 accacatcat taacgttaaa taaagagaaa tggaagccga tctggaataa agcgctggtt 420 tttctttttg ttgccacgta ttttctggat ggtattacgc gttataaaca tttgataatc 480 atacttatgg ttatcaccgc gatttatcag gtctcacgct caccgaaaag tttcccccct 540 cttttcaaaa atagcgtatt ttatagcgta gcagtattat cattaatcct tgtttattcc 600 atactcatat cgccagatat gaaagaaagt ttcaaggaat ttgaaaatac ggtactggag 660 ggcttcttat tatatacttt attaattccc gtactattaa aagatgaaac aaaagaaacg 720 gttgcgaaaa tagtactttt ctccttttta acaagtttag gacttcgctg ccttgcagag 780 agtattctgt atatcgagga ctataataaa gggattatgc cattcataag ctatgcgcat 840 cgacatatgt ccgattccat ggttttctta tttccagcat tattgaatat ttggctgttt 900 agaaaaaatg caattaagtt ggtttttttg gtgcttagcg ccatctacct tttctttatc 960 ctgggaaccc tatcgcgagg ggcatggttg gcggtgctta tagtaggtgt tctgtgggca 1020 atactgaacc gccaatggaa gttaatagga gttggtgcca ttttattagc cattatcggc 1080 gctttggtta tcactcaaca taataacaaa ccagacccag aacatttact gtataaatta 1140 cagcagacag atagctcata tcgttatact aacggaaccc agggcaccgc gtggatactg 1200 attcaggaaa acccgatcaa gggctacggc tatggtaatg atgtgtatga tggtgtttat 1260 aataaacgcg ttgtcgatta tccaacgtgg acctttaaag aatctatcgg tccgcataat 1320 accattctgt acatctggtt tagtgcaggc atattgggtc tggcgagcct ggtctattta 1380 tatggcgcta tcatcaggga aacagccagc tctaccctca ggaaagtaga gataagcccc 1440 tacaatgctc atctcttgct atttttatct ttcgtcggtt tttatatcgt tcgtggcaat 1500 tttgaacagg tcgatattgc tcaaattggt atcattaccg gttttctgct ggcgctaaga 1560 aatagataaa aaaacgcgct gatacttatt acggtatcag cgcgttttcc atcatcagga 1620 ctcaatcact tatcaaacca gtttttcatt tgttcctcga aacgctgcgc tacattttcc 1680 caactgtatt ttgaaaacac cagggatttt gctttttcgg caatctggtg gcgttcctta 1740 tcagcaagcg cacggttaat atcattaatt atactgtcgc tcgacatagg ttctgcgagg 1800 tgatagcccg ttatgccatc taacacaaat tcgctaatcc cccctttttt gctggcaaga 1860 accgcttttc ctgctgccat cgcttctaca gccaccatgc aaaatgcttc ttcaacctga 1920 gatggcacaa taaccagatc ggctatatga tagaagttat gcatctggtc aggagattgc 1980 cccccagcca taatacaatc cgttccaatc tcttttgcgg cgtccagtac tttcttttga 2040 tactctgctt tttcaccctt gcggcttgca taagggtcgc caacaacgac aagtttaata 2100 ttacttctta aggtacgtaa ttgtttgaac gcctgcaaaa gcaacaggat gcctttatca 2160 ggcgaaattc tcccggcata caagagaacg gtggcatctt ccgcaatatt taattgctga 2220 cgaagattat cttgtgggtt tcttttataa gtctcagcac aaaaaccatt aggcacaata 2280 ctaacagcag cggcgggcaa tctttcttca taaaacgctt taagaaactg actgggcacg 2340 ataatttttg catcattatc aggaagttct ggttcaaatg cattatgcat gtgcataacc 2400 agttttgcat tcggattgcg ctctctgatc tgccgataca gtttcatact attatgaata 2460 acaatgacgc tatcttcctg ggtagtcact ttatctctaa tattaaggat gcgctgggaa 2520 tagggtagtg ggtcgagacg agtccatttc tgaaaaagac gcttataaac tttactaaac 2580 ccgatgtaat gaatatcaca gttatcgttt attttattat attcaggata gccagcattc 2640 tttatacaag caatagcatt cggtattgat agtcgttttg caacctggta aatccaggtt 2700 tctaccgcag ccgcaccacg aggaggaatt gaaaatatag gagtaacagt aaatatgatt 2760 tttttaatca taatagctat aatccagaat agttaacttt atagaaaaag aaatgttata 2820 aaaaaaagaa atgcgtgccg aagcaacgaa aaataatgat ttatctagtg tctagacaat 2880 tttatcgtaa tatatttcat cctcaagctc cgaggctgta atatatggaa taatatcgta 2940 atgaattgca gtatcatctg ataaattaaa gatatttaaa tcactcacat tttttctcat 3000 aaaagtaaaa aatggcagta ttttaaacag atctttacta agctcagatg gcatagggct 3060 ggtagattcg tcatagaaac gtgggcaact ccctgttaag tcaagcccag aacatataat 3120 acggccatac ttgagggaat aggcaacctg aatagcggta taagcaatag tatggcaaga 3180 gcaatacccg atgctgatat ccttgcaaaa tccagccagt cgccctcttt tcgaaagagg 3240 aactgaaata agtaatgctt tatgaacccg cttgaggata ttaaatttaa ttttctttaa 3300 aaagccccct ttttctcggc gataaaagga gcgaataatt aaacagtttt cttcaatata 3360 tttttgatca tccactgaag cctgttcgta cacatcaaga ttgacgatag taaactgact 3420 gttacggcta aagttataaa aatcttcgcg ccgacgatgg aggaagcgaa tatccgtcag 3480 aaggtacaaa aatggcttga cgttattgtt tagcaaatat tgaacagaac cattgactgc 3540 aatgacatct ttcattcgta acaaggacag cggcgtcttt ctggacgtag gaccagaaag 3600 aaaaataata caatcttcag ccgttctttt cgcaataagt tgcagaacat cggcgtgagt 3660 tatgaagtta acgctgccca taaaaaactc gtatgtttat catgcaacct ataaataaat 3720 gttatattca ataactaata ttacatctca aattctctca agtatgtcat aacgctgcag 3780 caaataaaag tcagtcagcc ccttaaatta aaccaaacgt gctacattga tcagcgtttt 3840 tccttaccct taatacgacg caagaaattt cggagttttt tcttataaat caataagtaa 3900 aatccgatat ctctcacatt atttttgata ccataatgtc tttctaaatc aatacgatcc 3960 tttgcttttc gttgtctgga aggtcttttt ccggacaaat cgataattct gatctcattg 4020 ccttgcagga taaagttacc tttatgggga tcgcccgaaa ccataccatg ctgatgcaga 4080 gaatatatcg actgtttgat tttccctctc acctcgtcag aaatttctgg catatcaaca 4140 agttcaatac cttcaatata ctcaattatc atcacgtatg tttttacata gcgtaatgtt 4200 ttaatttccg ccagcaggta aaaatcatta agcgccgcaa acccttcacg ccgcacacga 4260 tctgtctgat gaaaaagctt 4280 // |
|