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EBI DbfetchID M55918; SV 1; linear; genomic DNA; STD; VRL; 2319 BP. XX AC M55918; XX DT 07-JUN-1991 (Rel. 28, Created) DT 19-OCT-2008 (Rel. 97, Last updated, Version 11) XX DE Chicken anemia virus ORF1 (Cux-1), ORF2 (Cux-1), and ORF3 (Cux-1) genes, DE complete cds. XX KW . XX OS Chicken anemia virus OC Viruses; ssDNA viruses; Circoviridae; Gyrovirus. XX RN [1] RP 1-2319 RX PUBMED; 1851873. RA Noteborn M.H.M., de Boer G.F., Roozelaar D.J., Karreman C., Kranenburg O., RA Vos J.G., Jeurissen S.H.M., Hoeben R.C., Zantema A., Koch G., RA van Ormondt H., van der Eb A.J.; RT "Characterization of cloned chicken anemia virus DNA that contains all RT elements for the infectious replication cycle"; RL J. Virol. 65(6):3131-3139(1991). XX FH Key Location/Qualifiers FH FT source 1..2319 FT /organism="Chicken anemia virus" FT /isolate="Cuxhaven-1" FT /mol_type="genomic DNA" FT /db_xref="taxon:12618" FT gene 144..2292 FT /gene="Cux-1" FT repeat_region 144..260 FT /rpt_unit_range=219..239 FT /rpt_unit_range=240..260 FT /rpt_unit_range=165..185 FT /rpt_unit_range=186..206 FT /rpt_unit_range=144..164 FT /note="21-bp repeats with ATF sites" FT CAAT_signal 261..266 FT /gene="Cux-1" FT promoter 305..310 FT /gene="Cux-1" FT /note="SP1 box" FT TATA_signal 323..328 FT /gene="Cux-1" FT CDS 380..1030 FT /codon_start=1 FT /gene="Cux-1" FT /product="ORF1" FT /db_xref="GOA:P69484" FT /db_xref="InterPro:IPR006945" FT /db_xref="UniProtKB/Swiss-Prot:P69484" FT /protein_id="AAA91822.1" FT /translation="MHGNGGQPAAGGSESALSREGQPGPSGAAQGQVISNERSPRRYST FT RTINGVQATNKFTAVGNPSLQRDPDWYRWNYNHSIAVWLRECSRSHAKICNCGQFRKHW FT FQECAGLEDRSTQASLEEAILRPLRVQGKRAKRKLDYHYSQPTPNRKKAYKTVRWQDEL FT ADREADFTPSEEDGGTTSSDFDEDINFDIGGDSGIVDELLGRPFTTPAPVRIV" FT CDS 486..851 FT /codon_start=1 FT /gene="Cux-1" FT /product="ORF2" FT /db_xref="GOA:Q99152" FT /db_xref="InterPro:IPR006858" FT /db_xref="UniProtKB/Swiss-Prot:Q99152" FT /protein_id="AAA91823.1" FT /translation="MNALQEDTPPGPSTVFRPPTSSRPLETPHCREIRIGIAGITITLS FT LCGCANARAPTLRSATADNSESTGFKNVPDLRTDQPKPPSKKRSCDPSEYRVSELKESL FT ITTTPSRPRTAKRRIRL" FT CDS 853..2202 FT /codon_start=1 FT /gene="Cux-1" FT /product="ORF3" FT /db_xref="GOA:Q99153" FT /db_xref="InterPro:IPR007291" FT /db_xref="UniProtKB/Swiss-Prot:Q99153" FT /protein_id="AAA91824.1" FT /translation="MARRARRPRGRFYSFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAF FT RKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIFLTEGLILPKNSTAGGYADHMYGARVAK FT ISVNLKEFLLASMNLTYVSKIGGPIAGELIADGSKSQAADNWPNCWLPLDNNVPSATPS FT AWWRWALMMMQPTDSCRFFNHPKQMTLQDMGRMFGGWHLFRHIETRFQLLATKNEGSFS FT PVASLLSQGEYLTRRDDVKYSSDHQNRWQKGGQPMTGGIAYATGKMRPDEQQYPAMPPD FT PPIITATTAQGTQVRCMNSTQAWWSWDTYMSFATLTALGAQWSFPPGQRSVSRRSFNHH FT KARGAGDPKGQRWHTLVPLGTETITDSYMSAPASELDTNFFTLYVAQGTNKSQQYKFGT FT ATYALKEPVMKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMYWGTQP" FT polyA_signal 2287..2292 FT /gene="Cux-1" XX SQ Sequence 2319 BP; 591 A; 666 C; 643 G; 419 T; 0 other; gaattccgag tggttactat tccatcacca ttctagcctg tacacagaaa gtcaagatgg 60 acgaatcgct cgacttcgct cgcgattcgt cgaaggcggg gggccggagg ccccccggtg 120 gcccccctcc aacgagtgga gcacgtacag gggggtacgt catccgtaca ggggggtacg 180 tcatccgtac aggggggtac gtcacaaaga ggcgttcccg tacagggggg tacgtcacgc 240 gtacaggggg gtacgtcaca gccaatcaaa agctgccacg ttgcgaaagt gacgtttcga 300 aaatgggcgg cgcaagcctc tctatatatt gagcgcacat accggtcggc agtaggtata 360 cgcaaggcgg tccgggtgga tgcacgggaa cggcggacaa ccggccgctg ggggcagtga 420 atcggcgctt agccgagagg ggcaacctgg gcccagcgga gccgcgcagg ggcaagtaat 480 ttcaaatgaa cgctctccaa gaagatactc cacccggacc atcaacggtg ttcaggccac 540 caacaagttc acggccgttg gaaacccctc actgcagaga gatccggatt ggtatcgctg 600 gaattacaat cactctatcg ctgtgtggct gcgcgaatgc tcgcgctccc acgctaagat 660 ctgcaactgc ggacaattca gaaagcactg gtttcaagaa tgtgccggac ttgaggaccg 720 atcaacccaa gcctccctcg aagaagcgat cctgcgaccc ctccgagtac agggtaagcg 780 agctaaaaga aagcttgatt accactactc ccagccgacc ccgaaccgca aaaaggcgta 840 taagactgta agatggcaag acgagctcgc agaccgagag gccgatttta ctccttcaga 900 agaggacggt ggcaccacct caagcgactt cgacgaagat ataaatttcg acatcggagg 960 agacagcggt atcgtagacg agcttttagg aaggcctttc acaacccccg ccccggtacg 1020 tatagtgtga ggctgccgaa cccccaatct actatgacta tccgcttcca aggggtcatc 1080 tttctcacgg aaggactcat tctgcctaaa aacagcacag cggggggcta tgcagaccac 1140 atgtacgggg cgagagtcgc caagatctct gtgaacctga aagagttcct gctagcctca 1200 atgaacctga catacgtgag caaaatcgga ggccccatcg ccggtgagtt gattgcggac 1260 gggtctaaat cacaagccgc ggacaattgg cctaattgct ggctgccgct agataataac 1320 gtgccctccg ctacaccatc ggcatggtgg agatgggcct taatgatgat gcagcccacg 1380 gactcttgcc ggttctttaa tcacccaaag cagatgaccc tgcaagacat gggtcgcatg 1440 tttgggggct ggcacctgtt ccgacacatt gaaacccgct ttcagctcct tgccactaag 1500 aatgagggat ccttcagccc cgtggcgagt cttctctccc agggagagta cctcacgcgt 1560 cgggacgatg ttaagtacag cagcgatcac cagaaccggt ggcaaaaagg cggacaaccg 1620 atgacggggg gcattgctta tgcgaccggg aaaatgagac ccgacgagca acagtaccct 1680 gctatgcccc cagacccccc gatcatcacc gctactacag cgcaaggcac gcaagtccgc 1740 tgcatgaata gcacgcaagc ttggtggtca tgggacacat atatgagctt tgcaacactc 1800 acagcactcg gtgcacaatg gtcttttcct ccagggcaac gttcagtttc tagacggtcc 1860 ttcaaccacc acaaggcgag aggagccggg gaccccaagg gccagagatg gcacacgctg 1920 gtgccgctcg gcacggagac catcaccgac agctacatgt cagcacccgc atcagagctg 1980 gacactaatt tctttacgct ttacgtagcg caaggcacaa ataagtcgca acagtacaag 2040 ttcggcacag ctacatacgc gctaaaggag ccggtaatga agagcgatgc atgggcagtg 2100 gtacgcgtcc agtcggtctg gcagctgggt aacaggcaga ggccataccc atgggacgtc 2160 aactgggcga acagcaccat gtactggggg acgcagccct gaaaaggggg gggggctaaa 2220 gccccccccc cttaaacccc cccctggggg ggattccccc ccagaccccc cctttatata 2280 gcactcaata aacgcagaaa atagatttat cgcactatc 2319 // |
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