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EBI DbfetchID M37180; SV 1; linear; genomic RNA; STD; VRL; 2753 BP. XX AC M37180; XX DT 22-SEP-1990 (Rel. 25, Created) DT 25-OCT-2002 (Rel. 73, Last updated, Version 3) XX DE Potato virus Y helper component mRNA, 5' end. XX KW helper component. XX OS Potato virus Y OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; OC Potyvirus. XX RN [1] RP 1-2753 RX DOI; 10.1016/0042-6822(90)90356-V RX PUBMED; 2219708. RA Thornbury D.W., Patterson C.A., Dessens J.T., Pirone T.P.; RT "Comparative sequence of the helper component (HC) region of potato virus Y RT and a HC-defective strain, potato virus C"; RL Virology 178(2):573-578(1990). XX CC Draft entry and computer-readable sequence kindly submitted by CC D.W.Thornbury, 27-JUL-1990. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Potato virus Y" FT /strain="O" FT /mol_type="genomic RNA" FT /clone="pPVYdT1; pPVYHC17" FT /db_xref="taxon:12216" FT CDS 185..>2753 FT /codon_start=1 FT /note="helper component" FT /db_xref="GOA:P22602" FT /db_xref="InterPro:IPR001456" FT /db_xref="UniProtKB/Swiss-Prot:P22602" FT /protein_id="AAA47184.1" FT /translation="MATYMSTICFGSFECKLPYSPASCGHIVKEREVPASVDPFADLET FT QLSARLRKQEYATVRVLKNGTFTYRYKTDAQIMRIQKKLERKDREEYHFQMAAPSIVSK FT ITIAGGDPPSKSEPQAPRGIIHTTPKVRKVKTRPIIKLTEGQMNHLIKQVKQIMSEKRG FT SVHLISKKTTHVQYKEILGATRAAVRTAHMMGLRRRVDFRCDTWTVGLLQRLARTDKWS FT NQVRTIHVRRGDSGVILNTKSLKGHFGRSSGDLFIVRGSHEGKLYDARSRVTQSVLNSM FT IQFSNADNFWKGLDGNWARMRYPSDHTCVAGLPVADCGRVAALTRHSILPCYKITCPTC FT AQQYASLPVSDLFKLLHKHARDGLNRLGADKDRFIHVNKFLMALEHLTEPVDLNLELFN FT EIFKSIGEKQQAPFKNLNVLNNFFLKGKENTAHEWQVAQLSLLELARFQKNRTDNIKKG FT DISFFRNKLSARANWNLYLSCDNQLDKNANFLWGQREYHAKRFFSNFFDEIDPAKGYSA FT YEIRKHPNGTRKLSIGNLVVPLDLAEFRQKMKGDYRKQPGVSRKCTSSKDGNYVYPCCC FT TTLDDGSAIESTFYPPTKKHLVIGNSGDQKFVDLPKGDSEMLYIAKQGYCYINVFLAML FT INISEEDAKDFTKKVRDMCVPKLGTWPTMMDLATTCAQMRIFYPDVHDAELPRILVDHD FT TQTCHVVDSFGSQTTGYHILKASSVSQLILFANDELESDIKHYRVGGVPNACPELGSTI FT SPFREGGVIMSESAALKLLLKGIFRPRVMRQLLLDEPYLLILSILSPGILMAMYNNGIF FT ELAVRLWINEKQSIAMIASLLSALALRVSAAETLVAQRIIIDAA" XX SQ Sequence 2753 BP; 850 A; 533 C; 624 G; 746 T; 0 other; aattaaaaca actcaataca acataagaaa aacaacgcaa aaacactcgt aaacgcttat 60 tctcactcaa gcaacttgct aagtctcagt ttaaatcatt ccattgcaat tctcttaaac 120 aatattggaa accatttcaa ctcaacaagc aatttcatca cttccaacca atttcagatc 180 ctcaatggca acttacatgt caacaatctg tttcggttca tttgaatgca agctaccata 240 ctcacccgcc tcttgcgggc atattgtgaa ggaacgagaa gtgccagctt ccgttgatcc 300 tttcgcagat ctggaaacac aacttagtgc acgattgcgc aagcaagaat atgctactgt 360 tcgtgtgctc aagaacggta cttttacgta ccgatacaag actgatgccc agataatgcg 420 cattcagaag aaattggaga ggaaagatag ggaagaatat cacttccaaa tggccgctcc 480 cagtattgtg tcaaaaatta ctatagctgg tggagatcct ccgtcaaagt ctgagccaca 540 agcaccaaga gggataattc atacaactcc aaaggtgcgt aaagtaaaga cgcgccccat 600 aataaagttg acagaaggcc agatgaatca tctcattaag caggtaaagc agattatgtc 660 ggagaagaga gggtctgtcc atctgattag taagaagacc actcatgttc aatataagga 720 gatacttggt gcaactcgtg cagcggttcg aactgcacat atgatgggtt tgcgacggag 780 agtggacttc cgctgtgata cgtggacagt tggacttttg caacgtctcg ctcggacgga 840 caaatggtcc aatcaagtcc gcactatcca tgtacgaagg ggtgatagtg gggtcatctt 900 gaacacaaaa agcctcaaag gccactttgg tagaagctca ggagatctgt tcatagtgcg 960 tggatcacac gaagggaaat tgtacgatgc acgttctaga gttactcaga gtgttttgaa 1020 ctcaatgatc cagttttcga atgctgataa tttttggaag ggtttggatg gtaattgggc 1080 acgaatgaga tatccttcgg atcacacatg tgtagctggt ttacctgtcg cagattgtgg 1140 tagggttgcc gcattgacgc gacacagtat cctcccgtgc tataagataa cctgccccac 1200 ttgtgcccaa cagtatgcca gcttgccggt tagcgatctg tttaagttgt tgcataaaca 1260 tgcaagagat ggtttgaacc gattgggggc agataaagac cggtttatac atgttaataa 1320 gttcctgatg gcgttagagc atctaactga accggtggat ttgaatctcg agcttttcaa 1380 tgagatattt aaatccatag gggagaagca acaagcaccg ttcaagaatt taaatgtctt 1440 aaataatttc ttcctgaaag gaaaagaaaa tacagctcat gaatggcagg tggctcaatt 1500 aagtttgctc gaattagcaa ggttccagaa gaatagaact gataacatca agaaaggtga 1560 tatatctttc ttcagaaata aattatctgc cagggcaaat tggaatctgt atttgtcgtg 1620 cgacaaccag ttggataaaa atgcaaattt cctgtgggga caaagggagt atcatgctaa 1680 gcggtttttc tcaaatttct ttgatgaaat cgacccagca aagggatact cagcatatga 1740 aattcgcaag catccaaatg gaacaaggaa gctctcaatt ggtaatttag ttgtcccact 1800 tgatttagct gagtttaggc agaagatgaa aggtgactat aggaaacagc caggggtcag 1860 caggaagtgc acgagttcga aagatggcaa ttatgtgtat ccctgttgtt gcacaacact 1920 tgatgatggt tcagccattg aatcaacatt ctatccacca actaaaaagc accttgtaat 1980 aggtaatagt ggtgaccaaa aatttgttga tttaccaaaa ggggactcag agatgttata 2040 cattgccaaa cagggttatt gttatattaa cgtgtttctt gcaatgctga ttaacattag 2100 cgaggaggat gcaaaggatt tcacaaagaa agttcgcgac atgtgtgtac caaagcttgg 2160 aacctggcca actatgatgg atttggcgac cacttgtgct caaatgagaa tattctatcc 2220 tgacgtgcat gacgcagaac tgcctagaat attggttgac catgacactc aaacgtgtca 2280 tgtggttgac tcatttggct cgcagacaac tggatatcat attctaaaag catctagcgt 2340 gtctcaactt atcttgtttg caaatgatga attagaatct gatataaaac attatagggt 2400 tggtggtgtt cctaatgcat gccctgaact tgggtccaca atatcacctt tcagagaagg 2460 aggagttata atgtctgagt cggcagcgct gaaactgctt ttgaagggaa tttttagacc 2520 tagggtgatg agacagttgc tgttagatga gccttacctg ttgattctat caatattatc 2580 ccctggcata ctgatggcta tgtataataa tgggattttt gaacttgcgg taaggttgtg 2640 gattaatgag aaacaatcca tagctatgat agcatcgcta ctatcagctt tagccctacg 2700 agtgtcagcg gcagaaacac tcgtcgcaca gaggattata attgatgctg cag 2753 // |
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