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EBI DbfetchID M22056; SV 1; circular; genomic DNA; STD; VRL; 3027 BP. XX AC M22056; XX DT 22-APR-1989 (Rel. 19, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 4) XX DE Heron hepatitis B virus complete genome. XX KW circular; complete genome; core antigen; large surface antigen; polymerase; KW small surface antigen. XX OS Heron hepatitis B virus OC Viruses; Retro-transcribing viruses; Hepadnaviridae; Avihepadnavirus. XX RN [1] RP 1-3027 RX PUBMED; 3418788. RA Sprengel R., Kaleta E.F., Will H.; RT "Isolation and characterization of a hepatitis B virus endemic in herons"; RL J. Virol. 62(10):3832-3839(1988). XX DR GOA; P0C6K0. DR RFAM; RF01313; HHBV_epsilon. DR UniProtKB/Swiss-Prot; P0C6K0; CAPSD_HHBV. XX CC Draft entry and computer-readable sequence for [1] kindly provided CC by R.Sprengel, 10-JAN-1989. XX FH Key Location/Qualifiers FH FT source 1..3027 FT /organism="Heron hepatitis B virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:28300" FT CDS 170..2536 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:P13846" FT /db_xref="InterPro:IPR000201" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001462" FT /db_xref="UniProtKB/Swiss-Prot:P13846" FT /protein_id="AAA45738.1" FT /translation="MPQPLKQSLDQSRWLKEAEIKLRELENLVDSNLEDERLKPQLSMG FT EDVLSPEAGDPLHPNVRAPLSHVIGETRHDPPHLGNRDPARHKLGKLTGLYQMKGCEFN FT PHWKIPDISATNFSQEIINECPSRNWKYLTPAKFWPKSISYLPVHSGVKPKYPEFQQNH FT ESLVNDYLNKLFEAGILYKRVSKHLVTFKGPYFTWEQKHLVPQQHGAYSSKINDRQESR FT RRRIITATSSRKNDSSRIFGAHNNGRKISYHSTRDGSHRLSGRTSDPTSRGALAGGDST FT PIGPGSTAAHPSTHHVDRRRRQKGQGVLQAISREPSETRRNGTTSHHRVARCRTSSVED FT FTRRPFTQSKGAYPRQGTRGTDPQGPKAHQQEENGSYLRGNTSWPNRVTGRIFLVDKNS FT RNTEEARLVVDFSQFSKGKNAMRFPKYWCPNLTTLRRILPVGMPRISLDLSQAFYHLPL FT APASSSRLAVSDGKQVYYFRKAPMGVGLSPFLLHLFTTAIGAEIASRFNVWTFSYMDDF FT LLCHPSARHLNTISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLGYEISKQHMKIEESR FT WNELRTVIKKIKVGQWYDWKCIQRFIGHLNFVLPFTKGNIEMLKPMYDACTHRVNFAFS FT SRYKILLYKLTMGVCKLTLDPKVSLPLPRVATDATLTHGAISHITGGSAVFTFSKVRDI FT HIQELLMVCLAKLMIKPRCILTDSTYVCHRKFSKLPWHFAMYAKQLLTRLTLYYVPSKY FT NPADGPTRHKPPDWTAVTYTPLSKHIYIPHRLCGL" FT misc_feature 380..530 FT /note="reverse transcriptase domain" FT misc_feature 662..750 FT /note="RNAse H domain" FT mRNA 732..>1799 FT /note="surface antigen mRNA (alt.)" FT mRNA 740..>1799 FT /note="surface antigen mRNA (alt.)" FT CDS 792..1799 FT /codon_start=1 FT /product="large surface antigen" FT /db_xref="GOA:P13847" FT /db_xref="InterPro:IPR000349" FT /db_xref="UniProtKB/Swiss-Prot:P13847" FT /protein_id="AAA45739.1" FT /translation="MGHTQAKSTTDRRVEGGELLLQHLAGRMIPPEFSGPITTAGKFPT FT IQHVMDHIDSVEELRTLQAGGHWPEGTARRLGLDQPRPTPPPITWTEEEDKKAKEFFKQ FT YQENRPKPAETAPPPITELHAAEPPQWKISPEDPLLKAKALIPVKEPEVPILKVPKLTN FT KKKMGATFGGILAGLIGLLVGFFLLTKILEILRKLDWWWISLSSPKEKMLCAFQNTGAQ FT TSPHYVGSCPWGCPGFLWTYLRLFIIFLLLLLVAAGLLFLTENKSTIFEKLQWESVSAL FT SSSIYSLLPSEPKSLVALTFGLFLIWTTSSSVTQVLVTLTQLATLSALFFKNSG" FT CDS 1290..1799 FT /codon_start=1 FT /product="small surface antigen" FT /db_xref="GOA:P13847" FT /db_xref="InterPro:IPR000349" FT /db_xref="UniProtKB/Swiss-Prot:P13847" FT /protein_id="AAA45740.1" FT /translation="MGATFGGILAGLIGLLVGFFLLTKILEILRKLDWWWISLSSPKEK FT MLCAFQNTGAQTSPHYVGSCPWGCPGFLWTYLRLFIIFLLLLLVAAGLLFLTENKSTIF FT EKLQWESVSALSSSIYSLLPSEPKSLVALTFGLFLIWTTSSSVTQVLVTLTQLATLSAL FT FFKNSG" FT misc_binding 2220..2237 FT /bound_moiety="nuclear factor" FT misc_feature 2480..2550 FT /note="origin for reverse transcription" FT CDS join(2524..3027,1..414) FT /codon_start=1 FT /product="core antigen" FT /db_xref="GOA:P13845" FT /db_xref="InterPro:IPR002006" FT /db_xref="UniProtKB/Swiss-Prot:P13845" FT /protein_id="AAA45737.1" FT /translation="MWSLRLHPSPFGAACQGIFTSTSLLFLVTVPLVCTIVYDSCLYMD FT VNASRALANVYDLPDDFFPQIDDLVRDAKDALEPYWKAETIKKHVLIATHFVDLIEDFW FT QTTQGMSQIADALRAVIPPTTVPVPEGFLITHSEAEEIPLNDLFSNQEERIVNFQPDYP FT ITARIHTHLRVYTKLNEQALDKARRLLWWHYNCLLWGEATVTNYISRLRTWLSTPEKYR FT GKDAPTIEAITRPIQVAQGGRNQTKGTRKPRGLEPRRRKVKTTVVYGRRRSKSRGRRSS FT PSQRAGSPLPRNRGNQTRSPSPRE" FT mRNA join(2535..3027,1..414) FT /product="core antigen" XX SQ Sequence 3027 BP; 888 A; 736 C; 627 G; 776 T; 0 other; catacccact tacgtgttta tactaaattg aatgaacaag ctttggacaa agctcgcaga 60 ttgctttggt ggcattacaa ttgcctcctc tggggagaag ccactgttac aaattatatt 120 tctcgcctcc gtacttggct ttctactccc gaaaaatatc gaggcaagga tgccccaacc 180 attgaagcaa tcactagacc aatccaggtg gctcaaggag gcagaaatca aactaaggga 240 actagaaaac ctcgtggact cgaacctaga agacgaaagg ttaaaaccac agttgtctat 300 gggagaagac gttctaagtc ccgaggcagg agatcctctc catcccaacg tgcgggctcc 360 cctctcccac gtaatcgggg aaaccagaca cgatccccct cacctaggga atagggaccc 420 tgcacggcat aaactgggaa aattaactgg gttgtatcaa atgaagggct gtgagtttaa 480 cccacactgg aagataccag acatttcggc tacaaacttc tctcaggaga taattaacga 540 gtgcccttcc cgaaattgga aatatctgac tccagccaag ttttggccca agagcatttc 600 ctatcttcca gtccattcag gggttaaacc caagtaccca gaattccagc aaaatcatga 660 gtcactggta aatgattatc tcaataagct ctttgaagca ggaatcctct ataagcgagt 720 ttctaaacat ttggtcacat tcaagggccc gtatttcact tgggaacaaa agcaccttgt 780 cccgcaacaa catggggcat actcaagcaa aatcaacgac agacaggaga gtagaaggag 840 gagaattatt actgcaacat ctagcaggaa gaatgattcc tcccgaattt tcggggccca 900 taacaacggc aggaaaattt cctaccattc aacacgtgat ggatcacatc gactcagtgg 960 aagaacttcg gaccctacaa gcaggggggc actggccgga ggggacagca cgccgattgg 1020 gcctggatca accgcggccc acccctccac ccatcacgtg gacagaagaa gaagacaaaa 1080 aggccaagga gttcttcaag caatatcaag agaaccgtcc gaaacccgcc gaaacggcac 1140 cacctcccat caccgagttg cacgctgcag aacctcctca gtggaagatt tcaccagaag 1200 accctttact caaagcaaag gcgcttatcc ccgtcaagga accagaggta ccgatcctca 1260 aggtcccaaa gctcaccaac aagaagaaaa tgggagctac cttcggggga atactagctg 1320 gcctaatcgg gttactggta ggatttttct tgttgacaaa aattctagaa atactgagga 1380 agctagactg gtggtggatt tctctcagtt ctccaaagga aaaaatgcta tgcgctttcc 1440 aaaatactgg tgcccaaacc tcaccacatt acgtaggatc ctgcccgtgg ggatgcccag 1500 gatttctctg gacttatctc aggcttttta tcatcttcct cttgctcctg ctagtagcag 1560 caggcttgct gtttctgacg gaaaacaagt ctactatttt cgaaaagctc caatgggagt 1620 cggtctcagc cctttcctcc tccatctatt cactactgcc atcggagccg aaatcgctag 1680 tcgctttaac gtttggactt tttcttatat ggacgacttc ctcctctgtc acccaagtgc 1740 tcgtcacctt aacacaatta gccacgctgt ctgcactttt cttcaagaat tcgggataag 1800 gatcaacttt gacaaaatga ctccttcccc ggtgacaacg atcagatttc tcggctacga 1860 gatcagcaaa caacatatga agatcgaaga aagcagatgg aatgaactaa gaactgtaat 1920 caagaaaatc aaagttggac aatggtatga ttggaaatgt atccaaagat tcataggcca 1980 tctcaatttt gttttacctt ttacgaaagg aaacattgaa atgctaaaac ctatgtacga 2040 tgcctgtact catagagtta actttgcctt ttcttctagg tataaaatct tgttgtataa 2100 attaactatg ggagtatgta agttgacact ggatccaaag gtctctttac ctttgccacg 2160 tgtagccacg gatgctacat taacacatgg cgcaatatcc catatcaccg gcgggagcgc 2220 agtgtttacc ttttcaaagg tcagagacat acacatacag gaattgctga tggtatgttt 2280 agccaagtta atgattaaac ccagatgtat actgactgac tctacctatg tttgccatag 2340 gaaattctct aagctaccgt ggcattttgc aatgtatgcc aaacaattat taaccaggct 2400 gacattgtac tatgtaccca gtaaatataa tcctgctgat ggcccaacca ggcacaaacc 2460 tcctgattgg acggccgtta catacacccc tctctcgaag catatatata taccacatag 2520 gctatgtggt ctctaagatt acacccctct ccattcggag ctgcgtgcca aggtatcttt 2580 acgtcgacct cgctgttgtt ccttgtgact gtacctttgg tatgtaccat tgtttatgat 2640 tcttgcttat atatggatgt caatgcttca agagctttag caaatgtata tgatctgcca 2700 gatgatttct ttcctcagat tgatgatctt gttagagatg ctaaggatgc tttagaacct 2760 tattggaaag ccgaaacaat aaagaaacat gttttaattg ctactcactt tgtggatttg 2820 attgaggact tctggcagac cactcagggt atgagccaaa ttgcagacgc cctccgagca 2880 gtaattccac ctactaccgt accagtaccg gagggttttc tcattactca tagtgaggca 2940 gaagagatcc ccttgaacga tctcttttca aatcaagagg agaggatagt caatttccaa 3000 cctgactatc ccattacagc tagaatt 3027 // |
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