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EBI DbfetchID L42008; SV 1; linear; genomic DNA; STD; PRO; 4363 BP. XX AC L42008; XX DT 13-MAY-1995 (Rel. 43, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Bacillus sp. xylose transport ATP-binding protein gene, 3' end of cds, DE xylose transport permease, xylose isomerase gene, complete cds, xylulose DE kinase gene, 5' end of cds. XX KW ATP-binding protein; xylose isomerase; xylose transport permease; KW xylulose kinase. XX OS Bacillus sp. OC Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. XX RN [1] RP 1-4363 RX PUBMED; 8866023. RA Liao W.X., Earnest L., Kok S.L., Jeyaseelan K.; RT "Organization of the XYL genes in a thermophilic Bacillus species"; RL Biochem. Mol. Biol. Int. 39(5):1049-1062(1996). XX FH Key Location/Qualifiers FH FT source 1..4363 FT /organism="Bacillus sp." FT /strain="LW2" FT /mol_type="genomic DNA" FT /db_xref="taxon:1409" FT CDS <1..646 FT /codon_start=2 FT /transl_table=11 FT /product="xylose transport ATP-binding protein" FT /function="xylose transport" FT /note="putative" FT /db_xref="GOA:Q45698" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q45698" FT /protein_id="AAB46619.1" FT /translation="SICRNDNADLLMIFIHNRHERTNDSANFAACFRCISMLRKRRTFI FT GTAGNAPDRKKYGLILEMDIIKNSTLVALKRVTNWNMIDHALEVKYAEEMTKKMKLKAS FT NLELKVSQLSGGNQQKVVLSKWLLNNPQVLILDEPTRGIDVGAKYEIYKIINELASQGV FT GIVLISSELPEVMGMSDRILVMSEGRITGEFSRENATQEKIMACATGGRQK" FT RBS 631..636 FT CDS 643..1821 FT /codon_start=1 FT /transl_table=11 FT /product="xylose transport permease" FT /function="xylose transport" FT /note="putative" FT /db_xref="GOA:Q45699" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q45699" FT /protein_id="AAB46620.1" FT /translation="MKSLVSFRASMDSEKRRRLLPKLDFRSYTLVIALVLIALIFGVLT FT DGEFLSSRNLSNLFMQMSVISILAIGMTLVIIAGHIDLSVGSVVGLTGGIAAILQVWYG FT WGTVSVIVVAIIVGALIGLWQGWWVSYRNVPAFIVTLGGMLIFRGILIGISNGETIAPL FT NKSFEAIGNSYLPYAVGYVLAIIGIIMLFVFVNRNRKKRKLLGLTVHTKANDYGKAAIY FT SLCILVLVYMLNRYYGIPIPMLIVVLLAILFVFIAVKTPFGRYIYAIGGNIEAAALSGI FT NIKRVVLTIFVLMGALSGVAGIILTSRLNAATVSSGEMYELDAIAACVIGGTSLMGGRG FT NIIGAMIGALIMASIDNGMSMMNIETFWQFIVKGLILIIAVWIDISSKSRTN" FT -35_signal 1859..1864 FT -10_signal 1886..1891 FT RBS 1923..1928 FT CDS 1937..3262 FT /codon_start=1 FT /transl_table=11 FT /product="xylose isomerase" FT /function="isomerization of xylose to xylulose" FT /EC_number="5.3.1.5" FT /note="putative" FT /db_xref="GOA:P54272" FT /db_xref="HSSP:1A0D" FT /db_xref="InterPro:IPR018115" FT /db_xref="UniProtKB/Swiss-Prot:P54272" FT /protein_id="AAB46621.1" FT /translation="MPYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSV FT AYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIA FT PEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAY FT AAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIG FT FDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHEL FT RVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKV FT RRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEG FT TVDFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVCAAR" FT CDS 3262..>4363 FT /codon_start=1 FT /transl_table=11 FT /product="xylulose kinase" FT /function="phophorylation of xylulose to FT xylulose-5-phophate" FT /EC_number="2.7.1.17" FT /note="putative" FT /db_xref="GOA:Q59253" FT /db_xref="InterPro:IPR018485" FT /db_xref="UniProtKB/TrEMBL:Q59253" FT /protein_id="AAB46622.1" FT /translation="MKRGIGLGACHWCGFRDKCAKGLLVDRNGNVKGEWTEAYPLNQPH FT SGYSEPNPEDWVEKTIVALRKLLEVSHVSPDSVAGLSFSGQMHGLVLLDKERNVLRNAI FT LWNDTRTTEECREIEEKVGKETLLSITKNRALEGFTLPKLLWVKKHEPHLYQRAYTFLL FT PKDYVRFRLTGHIAMEYSDAAGTLLLDVENKTWSQLICDILGIDVQLCPPLVESTAYVG FT TLLPEIAEEMGLPANVKVFWPAVPTMLCGAVGAGILSEGRMMCSIGTSGVVLAYEQTGK FT KDFAGKVHYFNHAKPDAYYIMGVTLAAGYSFDWWKRTFMEDVPFADIVQRAYESPIGAN FT GLLFAPYLVGERTPYADADIRASFIGI" XX SQ Sequence 4363 BP; 1253 A; 765 C; 1091 G; 1254 T; 0 other; atcgatatgc cgcaatgaca acgccgattt gttgatgatc tttattcata atcggcacga 60 acgcacgaat gacagtgcca atttcgccgc gtgctttcga tgtataagta tgctccgcaa 120 acgcaggacc ttcatcggca ctgcgggaaa cgcgcccgat cgtaagaaat atggtcttat 180 tcttgaaatg gatattataa aaaattccac tcttgtagcc ctaaaacggg tgacaaattg 240 gaatatgatt gatcatgctt tagaagtaaa atatgcggag gaaatgacaa agaaaatgaa 300 attaaaagca tctaacctag agctgaaagt atctcagctg agcggtggaa atcaacaaaa 360 ggtagtttta agtaaatggt tattaaataa tccgcaagtg cttattttgg atgaaccaac 420 tagaggaata gacgttggtg caaaatatga aatctataaa atcattaacg aattagctag 480 ccaaggtgtc ggtattgttc tgatttcatc agagttaccg gaagttatgg gaatgtcaga 540 tcgcatttta gtcatgtcag aaggaagaat tactggggag tttagcagag aaaatgctac 600 acaggaaaaa attatggctt gcgcaacggg agggagacaa aaatgaaaag tttggtttct 660 tttcgagcct ccatggattc agaaaaacgg agaaggctgc ttccaaaatt ggatttccgc 720 tcatatacgc ttgtcattgc ccttgtgctt atagcgctta tttttggagt gttaacagac 780 ggggagttcc tatcgtcacg caatttgtcc aacttattta tgcaaatgtc tgtaatctcg 840 attttagcaa tcgggatgac actagttatt atagcaggtc atattgattt atctgtaggc 900 tcggtcgttg gattaacagg aggaattgca gccattttac aagtttggta tggttgggga 960 actgtttctg ttattgttgt ggcaattatt gtcggtgcat tgataggact ttggcaaggc 1020 tggtgggttt cttatcgcaa tgtgcctgcg tttattgtta cactaggcgg catgctgatt 1080 tttaggggaa ttttaatcgg gatcagtaat ggagagacga ttgccccgtt gaataaaagt 1140 tttgaagcaa ttgggaatag ttatctgcca tatgcagttg gatatgtact agcaatcatc 1200 ggtattatca tgctatttgt ttttgtgaat agaaaccgca aaaagaggaa gctattaggg 1260 ttaactgtcc ataccaaagc caatgattat ggaaaagcgg cgatttactc actgtgcatt 1320 ttggtattag tttacatgtt aaaccgctac tacggtattc cgatcccaat gcttattgtc 1380 gttctacttg ctatcctttt cgtttttatc gctgtcaaaa ctccatttgg aagatacatt 1440 tacgccattg gcgggaatat tgaagcagca gctctctcag ggataaatat caaacgtgtt 1500 gtacttacta tatttgtttt aatgggagcg ctttctggag tagcaggcat tattttaacg 1560 agtagattga atgcggcaac agtaagtagc ggggaaatgt atgagttaga tgcaattgct 1620 gcctgcgtca ttggaggcac aagcctaatg ggcggaagag gaaatataat cggagctatg 1680 atcggcgccc ttattatggc tagcatcgat aatgggatga gcatgatgaa catcgaaacc 1740 ttttggcaat ttattgtaaa aggattgatt cttattatcg ctgtctggat tgatatatcg 1800 agtaaaagcc gaactaacta attcatcggt gttttgaaga ttttagttaa aaatgctatt 1860 tacattttgc gtaaatccca atcattatga ttggtttatt ctactaataa acatttatta 1920 ataggaggaa tttgccatgc cttattttga caacatcagc accatcgcct atgaaggacc 1980 ggcgtctaaa aacccgcttg cgtttaagtt ttacaatccg gaagaaaaag tcggcgataa 2040 aacaatggaa gagcatttgc gtttttcggt tgcgtattgg catacgttta caggagatgg 2100 atcagatccg tttggggctg gcaatatgat ccgtccatgg aacaaataca gcggaatgga 2160 tttggccaaa gcgcgtgttg aagctgcttt tgagtttttt gaaaaattaa atattccatt 2220 tttctgtttc catgatgtgg atattgcccc agaaggagaa acattaaaag aaacatataa 2280 aaatttagat attatcgtag acatgattga agaatatatg aaaacaagca aaacgaagct 2340 gctttggaat acggcgaact tatttaccca tcctcgcttt gtccatggcg ccgccacttc 2400 ttgcaacgcc gatgtttttg cctatgcagc ggccaaagta aaaaaagggt tggaaattgc 2460 gaagcggtta ggagcggaaa actacgtatt ttggggcgga cgagaagggt atgaaacact 2520 attaaatacc gatatgaaac ttgagctgga caacttggcc cgcttcttgc atatggcggt 2580 ggattatgcg aaagaaatcg ggtttgacgg gcaattttta attgagccga agccgaaaga 2640 gccgacgaaa caccaatatg actttgatgt tgcgacagca ttggcatttt tgcaaacata 2700 cggactgaaa gattacttta agttcaatat tgaagcgaac catgcaacgc tggcgggaca 2760 tacgtttgaa catgaattgc gggtagcgcg cattcatggc atgttaggct ctgttgacgc 2820 aaaccaagga gatatgttgt taggatggga tacggacgaa ttcccgacag acttatattc 2880 tacgactttg gcaatgtatg aaattttgaa aaacggcggc cttggccgtg gcggtttgaa 2940 ttttgatgcg aaagtaagaa gaggatcgtt tgagccggaa gatttgttct atgcccatat 3000 cgccggaatg gacagttttg cggttggatt aaaagtagcc catcgattaa tagaagaccg 3060 cgtttttgat gagtttattg aagaacggta caaaagttat acagaaggaa ttggccggga 3120 aatcgtcgaa ggaacggtgg atttccataa attagaagca catgctttac aactagggga 3180 aatccaaaat caatcgggca gacaagaacg gctgaaaaca ttgcttaacc aatatttgct 3240 tgaagtttgc gcagcccgtt aatgaaaaga gggatcggtc ttggagcatg tcattggtgt 3300 ggatttaggg acaagtgcgc taaaggtctg cttgtggatc ggaatgggaa tgtaaagggg 3360 gagtggacag aagcgtatcc cttaaatcag ccccattccg ggtatagtga accaaatcct 3420 gaagactggg ttgaaaaaac gattgttgct ttaagaaagt tattagaagt ttcccatgtt 3480 tctcctgact ctgttgctgg attgagtttt tccggccaga tgcacggact tgtgcttttg 3540 gataaggaac ggaacgtcct gcgaaatgcg attttgtgga atgatacgag gaccacggaa 3600 gaatgccggg aaattgagga gaaagtggga aaagaaacgt tattatcgat tacgaaaaac 3660 cgtgcgttag aaggatttac gctgccgaag ttattatggg tgaaaaagca tgagccgcat 3720 ctttatcagc gtgcgtacac gtttttgctg ccaaaggatt acgtccgttt ccgtcttacg 3780 ggacacattg cgatggagta ttccgatgcg gcggggacgt tgttgttaga tgttgaaaat 3840 aagacatgga gccagctgat ttgcgacatt cttggcattg atgttcagct gtgccctcct 3900 ttagtcgaat caacggcata tgtcggaaca ttgcttccgg aaatcgcgga agaaatggga 3960 ttacctgcga atgttaaagt tttttggccg gcggtgccga caatgctttg cggtgcagtt 4020 ggcgctggca ttttatcgga agggcgcatg atgtgcagca tcggcacatc cggtgtcgtt 4080 ttggcgtacg agcaaacagg aaagaaagat tttgccggaa aagttcatta ttttaatcat 4140 gccaagccgg atgcctacta tattatgggg gtgacattgg ccgccgggta tagttttgat 4200 tggtggaagc gtacgtttat ggaagacgtc ccatttgccg atattgtcca gcgtgcctat 4260 gaatcgccaa ttggcgccaa tggcttgttg tttgccccat atttggtcgg ggaacgcact 4320 ccttatgccg atgccgatat ccgcgcctcc tttatcggga tcc 4363 // |
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