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EBI DbfetchID L39265; SV 1; linear; genomic DNA; STD; PRO; 4646 BP. XX AC L39265; XX DT 18-APR-1995 (Rel. 43, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Rhizobium meliloti 1021 ribosomal protein S20 (rpS20), enoyl CoA hydratase DE (fadB1), dnaA, orfX, genes, complete cds, and orfY, DE formamidopyrimidine-DNA glycosylase (fpg) genes, partial cds. XX KW dnaA gene; enoyl-CoA hydratase; fadB1 gene; KW formamidopyrimidine-DNA glycosylase; fpg gene; orfX gene; orfY gene; KW ribosomal protein S20; rpsT gene. XX OS Sinorhizobium meliloti OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; OC Sinorhizobium/Ensifer group; Sinorhizobium. XX RN [1] RP 1-4646 RX PUBMED; 7751302. RA Margolin W., Bramhill D., Long S.R.; RT "The dnaA gene of Rhizobium meliloti lies within an unusual gene RT arrangement"; RL J. Bacteriol. 177(10):2892-2900(1995). XX FH Key Location/Qualifiers FH FT source 1..4646 FT /organism="Sinorhizobium meliloti" FT /strain="1021" FT /mol_type="genomic DNA" FT /db_xref="taxon:382" FT gene 1..215 FT /gene="fpg" FT CDS <1..215 FT /codon_start=3 FT /transl_table=11 FT /gene="fpg" FT /product="formamidopyrimidine-DNA glycosylase" FT /EC_number="3.2.2.23" FT /db_xref="GOA:Q59752" FT /db_xref="InterPro:IPR000191" FT /db_xref="InterPro:IPR000214" FT /db_xref="InterPro:IPR010979" FT /db_xref="InterPro:IPR012319" FT /db_xref="InterPro:IPR015886" FT /db_xref="InterPro:IPR015887" FT /db_xref="InterPro:IPR020629" FT /db_xref="UniProtKB/Swiss-Prot:Q59752" FT /protein_id="AAA91094.1" FT /translation="IRAVIADAIAAGGSSLKDHIQADGSLGYFQHSFSVYDREGEACRT FT PGCHGTVARIVQAGRSTFYCPHCQK" FT gene 273..1046 FT /gene="fadB1" FT CDS 273..1046 FT /codon_start=1 FT /transl_table=11 FT /gene="fadB1" FT /product="enoyl CoA hydratase" FT /db_xref="GOA:Q52995" FT /db_xref="InterPro:IPR001753" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/Swiss-Prot:Q52995" FT /protein_id="AAA91095.1" FT /translation="MSYETLLVETQGRVGLITLNRPQALNALNAVLMRELDAALKAFDA FT DRAVGAIVLAGSEKAFAAGADIKEMQGLDFVDGYLADFLGGWEHVANARKPMIAAVSGF FT ALGGGCELAMMCDFIIASETAKFGLPEITLGVIPGMGGSQRLTRAVGKAKAMDLILTGR FT MMDAAEAERSGLVSRVVAPDRLLEEALGAAEKTASFSLPAAMMAKEAVNRSLELTLTEG FT LRFERRLFQSLFATEDQKEGMAAFVAKRKAEFKHR" FT gene 1238..1504 FT /gene="rpsT" FT CDS 1238..1504 FT /codon_start=1 FT /transl_table=11 FT /gene="rpsT" FT /product="ribosomal protein S20" FT /db_xref="GOA:P48948" FT /db_xref="InterPro:IPR002583" FT /db_xref="UniProtKB/Swiss-Prot:P48948" FT /protein_id="AAA91096.1" FT /translation="MANTTSAKKATRKIARRSAVNKARRSRIRSFVRKVEEAIASGDQA FT LAAAALKAAQPELMRPATKGVMHSNTASRKVSRLAQRVKSLSA" FT gene 2430..3953 FT /gene="dnaA" FT CDS 2430..3953 FT /codon_start=1 FT /transl_table=11 FT /gene="dnaA" FT /db_xref="GOA:P35890" FT /db_xref="InterPro:IPR001957" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR010921" FT /db_xref="InterPro:IPR013159" FT /db_xref="InterPro:IPR013317" FT /db_xref="InterPro:IPR018312" FT /db_xref="InterPro:IPR020591" FT /db_xref="UniProtKB/Swiss-Prot:P35890" FT /protein_id="AAA91097.1" FT /translation="MRMNLATAPGGFRPERNQSQAAGEKHDMRHDALFERVSARLKAQV FT GPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITTLVQQEDSEILKVEI FT LVRTATRGHRPTAPEESVAAAAEAAVVPPSRRSAAPTVAIAAAAVAAAPARPVQAPLFG FT SPLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGKTHLLQAIA FT LAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLIIDDMQFLQGKSI FT QHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDYEMRLEM FT LKRRLEAARQDDASLEIPLEILSHVARNVTASGRELEGAFNQLLFRRSFEPQLSIERVD FT ELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLT FT PRSFPEIGRRFGGRDHTTVLHAVRKIEELISADTKLSHEIELLKRLINE" FT gene 4077..4379 FT /gene="orfX" FT CDS 4077..4379 FT /codon_start=1 FT /transl_table=11 FT /gene="orfX" FT /db_xref="InterPro:IPR005545" FT /db_xref="InterPro:IPR011008" FT /db_xref="UniProtKB/Swiss-Prot:Q52996" FT /protein_id="AAA91098.1" FT /translation="MLYAVLCYNDESVTSAWSKEEDERVMRDLSAVQRKYVEAGKLGPV FT ARLVPTTAAATLRHSAGETIVMDGPFAETKEQLLGFYLIDCASLDEALDFARASE" FT gene 4449..4646 FT /gene="orfY" FT CDS 4449..>4646 FT /codon_start=1 FT /transl_table=11 FT /gene="orfY" FT /db_xref="GOA:Q52997" FT /db_xref="InterPro:IPR007627" FT /db_xref="InterPro:IPR011990" FT /db_xref="InterPro:IPR013249" FT /db_xref="InterPro:IPR013324" FT /db_xref="InterPro:IPR013325" FT /db_xref="InterPro:IPR014284" FT /db_xref="UniProtKB/Swiss-Prot:Q52997" FT /protein_id="AAA91099.1" FT /translation="MTDTGWIDLALVSARPQAMGALLRYFRNLDLAEEAFQEACIRALK FT NWPRTGPPRDPAAWLIFVGRN" XX SQ Sequence 4646 BP; 892 A; 1407 C; 1453 G; 894 T; 0 other; ggatccgcgc cgtgattgcc gatgcgatcg ccgccggcgg ctcctcgctc aaggatcaca 60 ttcaggcgga cggcagtctc ggctatttcc agcacagctt ctccgtctat gacagggaag 120 gcgaggcttg ccgcacgccc ggctgccacg gtacggtcgc ccgcatagta caggcgggac 180 gttcgacttt ttactgtccg cactgccaga aatagggcgg catggcacat tccgctcttc 240 aatcttccga caacgcgtga aggagatggg gaatgagtta cgagacgttg ctggtcgaaa 300 cgcagggccg cgtgggcctg atcacgctca accgtccgca ggcgctcaat gcgctgaatg 360 cggtgctgat gcgcgagctc gatgccgcgc tgaaggcctt cgacgccgac agggccgtcg 420 gcgccatcgt ccttgccggc tccgagaagg cctttgccgc cggcgccgac atcaaggaga 480 tgcaggggct cgatttcgtc gacggttacc tcgccgattt ccttggcggc tgggagcatg 540 tcgcgaacgc ccgcaaaccg atgatcgccg ccgtatccgg tttcgcgctc ggcggtggct 600 gcgagctcgc catgatgtgc gacttcatca tcgcctccga aacggcgaag ttcggcctgc 660 cggagattac gcttggcgtc attcccggca tgggtggatc gcagcgcctg acccgcgcag 720 tcggcaaggc gaaggccatg gacctcattc tcaccggccg catgatggac gcggcggagg 780 cggagcgctc cggcctggtt tcgcgcgtgg tggctccgga caggctcctg gaggaggcgc 840 tcggcgccgc ggagaagact gcgtcattct ctctgccggc ggcgatgatg gccaaggagg 900 ccgtcaaccg ctctctggaa ctgacgctca ccgagggcct gcgcttcgag cggcggctct 960 tccagtcgct tttcgcaacg gaggaccaga aagagggcat ggccgccttc gtcgccaagc 1020 gcaaagccga attcaaacac agatgagcca tggacaggac tcggttttct caaattgcgc 1080 gttgacgtgc gggcggtttc cctttatacg ccgccctcag tttggaacgc cctcgttcga 1140 ggctttccga taatactccc gaattgcttg tatgacaggt cgcagtgacc cggcacggcg 1200 aggcggagtc catgtcagtt ttcgaagaga ggcatcaatg gccaatacaa cttcggcgaa 1260 aaaggcgacc cgcaagatcg cacgccgttc cgcagtgaac aaggcccgtc gttcgcgcat 1320 ccgcagcttc gtccgcaagg tcgaagaggc gatcgcttcc ggcgatcagg cactcgcagc 1380 cgccgccctg aaggcggcac agccggagct gatgcgcccc gccacgaagg gcgtaatgca 1440 ttccaacacg gcatcgcgta aggtctcgcg actggcgcag cgcgtgaaga gcctttcggc 1500 ctaacccggc taagaaaaaa gctgttgatg aagtgcccgg cgttttcgcc gggcttttcc 1560 gattcgtgcc gccgccaacg gcctgcgcga ttgaccttgc cacgctcgtg tcaatcccgt 1620 gacaaaaaaa ttctaagctt ttcaatagct tatgagaggt tgcggcaaaa atgtggtctg 1680 gcggggcggg cggattgagt ccgaagtgag tcaagccatt ttttattttt tttctttttc 1740 gccagctaag caagaacgca aaaaacaaaa cccttgattc aacagggatt ctcgccggac 1800 tcggggagcg ggatgcaaaa cccggcacga gagtcaactg tcgacgctta cgggcgggta 1860 aaaaacgcga ttgatcttgc cgggcgtacc tgcctaaatg ccttccacag gggacacaga 1920 ttacatctgt acgaggaagt ttaagggtca ttccaatcgg ggtgactttg ggctttccgt 1980 cgcctgtggc ggggttaatt ccacgtcgat caatcaaaca agtcgagacg ataaaaccgg 2040 gcgagccttc gcaccggagc gaggacgttt cgtcttgtgg ttgccggcag ggcttagcct 2100 tgtgaatgcg ttggagcagg aagaaggagg ctcgggctgt ccgctacgta cgagggtgcg 2160 gtcagccggc aacgaggaaa aacggttccg gtcggcttga aaagagccgt gcagaatcgg 2220 taaggcgaag tgcgagggga catttgcttg aggcgaaggc aagcgaatga gcgcagcgtg 2280 ccgtggcggg atatgaggag cccggttcgg tgcgtatcag agcgtccggc tgacgcggca 2340 tggctttcga gcggccgtgg cgggcgggca taaaagatga ggccgccaga aatgacggca 2400 tcggaataat gaaattggaa ggcggcaaga tgcggatgaa tttggcgacg gcacctggag 2460 gtttcaggcc ggaacgcaat cagtctcagg cggcggggga aaaacacgac atgcggcatg 2520 acgcactgtt tgagcgggta agtgcgcgct tgaaagccca ggtcggtccg gatgtcttcg 2580 caagttggtt tggacgcctc aagctccatt cagtgtcgaa aagcgtcgtg cgcctctcgg 2640 tcccgacgac ttttctgaag tcctggatca ataatcgcta tctcgatctg atcaccacgc 2700 tcgtccagca ggaggacagc gagatactga aggtggagat cctcgtgcgc accgcgaccc 2760 gcggtcatcg cccgacggct cctgaagaga gcgttgccgc ggctgccgaa gcggcggtcg 2820 tccctccctc ccgccgttcg gcggccccca ccgtggcaat tgccgccgct gcggttgcgg 2880 cagctccggc gagacccgtc caggcgccgc ttttcggctc gccgctcgat cagcgctacg 2940 gtttcgatag tttcgtagag ggctcgtcga accgggtcgc gctcgcggca gcgcgtacga 3000 ttgccgaggc cggcgccggc gccgtgcgct tcaatccgct tttcatccat tcgagcgttg 3060 gtctcggcaa gacgcatctt ctgcaggcga tcgctctcgc ggccctccag agtgcgcgcg 3120 cgccacgcgt cgtctatctg acggccgaat atttcatgtg gcgtttcgca acggcgatcc 3180 gcgacaatga cgcgctgtcg ctgaaggaat cgcttcgcaa catcgacctt ctcattatcg 3240 acgacatgca gttcctgcag ggcaagtcga tccagcacga gttctgccat ctgttgaaca 3300 tgctgctcga ctccgccaag caggtggtcg tcgccgcgga ccgtgcaccc tgggagctgg 3360 aatcgctcga cagccgcgtt cgctcgcgcc tgcaaggcgg cgtggcgatc gagatggaag 3420 ggccggacta cgagatgcgc ctggaaatgc tgaagcgtcg tctcgaagcg gcgcgccagg 3480 acgatgcctc gctcgagatt ccgctcgaga tactgagcca tgtcgcccgc aacgtgacag 3540 ccagcggccg cgaactcgag ggcgccttca atcagcttct cttccgccgc tccttcgagc 3600 cgcagctttc gatcgagcgg gtcgacgaac tgctcggcca tctcgtcaat gccggggaac 3660 cgcgccgcgt ccgcatcgaa gatatccagc gcgtcgtcgc caagcattac aatgtctcgc 3720 gtcaggagct ggtctccaac cgccgcaccc gcgtcatcgt caagccgcgc cagatcgcca 3780 tgtatctgtc gaagacactg accccgcgct ccttccccga gatcggccgc cgcttcggcg 3840 ggcgcgacca cacgaccgtg ctccatgctg tgcgcaagat cgaggaactg atttctgccg 3900 acaccaagct cagccacgag atcgagcttt tgaagcgact gatcaacgaa tagaggcagg 3960 aaagcccgac gttacgaaag cccggtccgc cgggcttttt tgttgagcgt ttttttcgcc 4020 ccgcttgtcg gctatcaata gcgccattcg tcttcagacc agagcggaga ttttcaatgc 4080 tttacgccgt gctttgctac aacgatgaaa gcgtcaccag tgcctggagc aaggaggagg 4140 acgagagggt catgcgtgat ctgagcgccg tccaacgcaa atatgtcgaa gcgggcaagc 4200 tggggcccgt cgcgcgcctg gtgccgacga cggcggcggc gacgctgcgc cacagcgccg 4260 gcgagacgat cgtcatggac ggccccttcg ccgagaccaa ggaacagttg ctcggcttct 4320 atctgatcga ttgcgcctcg ctggatgagg cgctcgactt cgcgcgcgca tctgagtaac 4380 gccaatccga gcacgggctc ctacgaggtc cggccgctcg cgctttataa acccggtgag 4440 ctgccctcat gaccgacaca ggctggatcg atcttgctct tgtttccgcg cggccgcagg 4500 caatgggtgc gctgctgcgt tactttcgca atctcgatct ggcggaggag gcgttccagg 4560 aggcctgtat ccgtgcgctg aaaaactggc cccgcaccgg tccgccgcgc gatcccgccg 4620 cctggctcat cttcgtcggc cgcaac 4646 // |
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