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EBI DbfetchID L38424; SV 1; linear; genomic DNA; STD; PRO; 6540 BP. XX AC L38424; XX DT 19-APR-1995 (Rel. 43, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; DE poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase DE ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, DE complete cds's. XX KW biotin [acetyl-CoA carboxylase] ligase; dihydropicolinate reductase; KW poly(A) polymerase. XX OS Bacillus subtilis OC Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. XX RN [1] RP 1-6540 RX PUBMED; 7730294. RA Bower S., Perkins J., Yocum R.R., Serror P., Sorokin A., Rahaim P., RA Howitt C.L., Prasad N., Ehrlich S.D., Pero J.; RT "Cloning and characterization of the Bacillus subtilis birA gene encoding a RT repressor of the biotin operon"; RL J. Bacteriol. 177(9):2572-2575(1995). XX RN [2] RP 1-6540 RA Sorokin A.V., Azevedo V., Zumstein E., Galleron N., Ehrlich S.D., RA Serror P.; RT "Bacillus subtilis chromosome between spoIIA and kdg loci"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..6540 FT /organism="Bacillus subtilis" FT /map="202 degrees" FT /strain="Marburg" FT /sub_strain="168" FT /mol_type="genomic DNA" FT /db_xref="taxon:1423" FT terminator 29..42 FT /standard_name="transcription terminator" FT /note="putative" FT CDS complement(59..706) FT /codon_start=1 FT /transl_table=11 FT /gene="jojC" FT /product="unknown" FT /note="putative" FT /db_xref="GOA:P42978" FT /db_xref="InterPro:IPR019264" FT /db_xref="UniProtKB/Swiss-Prot:P42978" FT /protein_id="AAA92872.1" FT /translation="MFVYTLVGTVALSLFLSIFQRYEIHMPLQHDLALAALFAGVFIGA FT GLGIIFKFGGTTGGVDIIARLVNKYFGIPMGRTMFAFDACVIILSLLTYLSYKEAMYTL FT VAVFVAARLIDFIQEGGYAAKGATIISSKNDLIQKKILEEMERGVTILKGQGSYTKEDI FT DVLYCVVPKNELVMLKSVINSIDPHAFVAVSDVHDVLGEGFTLDENKNPLPR" FT CDS 1011..1346 FT /codon_start=1 FT /transl_table=11 FT /gene="jojD" FT /product="unknown" FT /note="putative" FT /db_xref="InterPro:IPR004518" FT /db_xref="PDB:2GTA" FT /db_xref="UniProtKB/Swiss-Prot:P42979" FT /protein_id="AAA92873.1" FT /translation="MSDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREV FT NHRYGEKPKKATEDDKSMEEEIGDVLFVLVCLANSLDISLEEAHDRVMHKFNTRDKDRW FT TRKEEGK" FT CDS 1358..2101 FT /codon_start=1 FT /transl_table=11 FT /gene="dapB" FT /product="dihydropicolinate reductase" FT /function="lysine biosynthesis" FT /note="28.2% of identical aminoacids with the Escherichia FT coli dihydropicolinate reductase; putative" FT /db_xref="GOA:P42976" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:P42976" FT /protein_id="AAA92874.1" FT /translation="MSNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQQK FT LSDVMPVESDAFIYTDIHACFTETQPDVLIDLTTPEIGKVHTKIALEHGVRPVVGTTGF FT SEADLKELTSLTEEKGIGAIIAPNFALGAILMMKFSKMAANYFEDVEIIELHHDQKLDA FT PSGTALKTAEMISEVRKEKQQGHPDEKEILPGARGAEQNGIRLHRLQIRHDSYNRASFM FT SGVKLSVEQVMKIDQLVYGLENIID" FT CDS 2117..2530 FT /codon_start=1 FT /transl_table=11 FT /gene="jojF" FT /product="unknown" FT /note="putative" FT /db_xref="GOA:P42980" FT /db_xref="HSSP:1B93" FT /db_xref="InterPro:IPR011607" FT /db_xref="UniProtKB/Swiss-Prot:P42980" FT /protein_id="AAA92875.1" FT /translation="MKIALIAHDKKKQDMVQFTTAYRDILKNHDLYATGTTGLKIHEAT FT GLQIERFQSGPLGGDQQIGALIAANALDLVIFLRDPLTAQPHEPDVSALIRLCDVYSIP FT LATNMGTAEILVRTLDEGVFEFRDLLRGEEPNV" FT CDS 2523..3197 FT /codon_start=1 FT /transl_table=11 FT /gene="jojG" FT /product="unknown" FT /note="putative" FT /db_xref="InterPro:IPR003737" FT /db_xref="UniProtKB/Swiss-Prot:P42981" FT /protein_id="AAA92876.1" FT /translation="MYNADVLAFGAHSDDVEIGMGGTIAKFVKQEKKVMICDLTEAELS FT SNGTVSLRKEEAAEAARILGADKRIQLTLPDRGLIMSDQAIRSIVTVIRICRPKAVFMP FT YKKDRHPDHGNAAALVEEAIFSAGIHKYKDEKSLPAHKVSKVYYYMINGFHQPDFVIDI FT SDTIEAKKQSLNAYKSQFIPSKDSVSTPLTNGYIEIVEAREKLYGKEAGVEYAEVSFPN FT GC" FT CDS 3229..4302 FT /codon_start=1 FT /transl_table=11 FT /gene="jojH" FT /product="unknown" FT /note="21.6% of identity to trans-acting transcription FT factor of Sacharomyces cerevisiae; 25% identity to sucrose FT synthase of Zea mays; putative" FT /db_xref="GOA:P42982" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/Swiss-Prot:P42982" FT /protein_id="AAA92877.1" FT /translation="MRKLGKQLAEKGHEIHFITSSIPFRLNTYHPNIHFHEVEVNQYAV FT FKYPPYDLTLASKIAEVAERENLDIIHAHYALPHAVCAYLAKQMLKRNIGIVTTLHGTD FT ITVLGYDPSLKDLIRFAIESSDRVTAVSSALAAETYDLIKPEKKIETIYNFIDERVYLK FT KNTAAIKEKHGILPDEKVVIHVSNFRKVKRVQDVIRVFRNIAGKTKAKLLLVGDGPEKS FT TACELIRKYGLEDQVLMLGNQDRVEDLYSISDLKLLLSEKESFGLVLLEAMACGVPCIG FT TNIGGIPEVIKNNVSGFLVDVGDVTAATARAMSILEDEQLSNRFTKAAIEMLENEFSSK FT KIVSQYEQIYADLAEPE" FT CDS 4307..5440 FT /codon_start=1 FT /transl_table=11 FT /gene="papS" FT /product="polyA polymerase" FT /note="38.9% of identical aminoacids with the Escherichia FT coli pcnB gene product, encoding poly(A) polymerase; FT putative" FT /db_xref="GOA:P42977" FT /db_xref="InterPro:IPR002646" FT /db_xref="UniProtKB/Swiss-Prot:P42977" FT /protein_id="AAA92878.1" FT /translation="MEKVFIKALPVLRILIEAGHQAYFVGGAVRDSYMKRTIGDVDIAT FT DAAPDQVERLFQRTVDVGKDESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTADG FT KVLDYFGGKKDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLGFTLSPETEEAIAKE FT KSLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLYEELPGFYHKRENLISTSEFPF FT FSLTSREELWAALLINLGIVLKDAPLFLKAWKLPGKVIKEAIHIADTFGQSLDAMTMYR FT AGKKALLSAAKISQLRQNEKLDEKKLKDIQYAYQNLPIKSLKDLDITGKDLLALRNRPA FT GKWVSEELQWIEQAVVTGKLSNQKKHIEEWLKTCGQH" FT CDS 5425..6342 FT /codon_start=1 FT /transl_table=11 FT /gene="birA" FT /product="biotin [acetyl-CoA carboxylase] ligase" FT /function="bifunctional biotin operon repressor" FT /note="26.7% identity to the Escherichia coli bifunctional FT biotin operon repressor" FT /db_xref="GOA:P42975" FT /db_xref="HSSP:1BIB" FT /db_xref="InterPro:IPR003142" FT /db_xref="UniProtKB/Swiss-Prot:P42975" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA92879.1" FT /translation="MRSTLRKDLIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELR FT KEGYEVEAVRRKGYRLIKKPGKLSESEIRFGLKTEVMGQHLIYHDVLSSTQKTAHELAN FT NNAPEGTLEGNGVWMSLILRPDIPLQKTPQLTLLAAVAVVQGIEEAAGIQTDIKWPNDI FT LINGKKTVGILTEMQAEEDRVRSVIIGIGINVNQQPNDFPDELKDIATSLSQAAGEKID FT RAGVIQHILLCFEKRYRDYMTHGFTPIKLLWESYALGIGTNMRARTLNGTFYGKALGID FT DEGVLLLETNEGIKKIYSADIELG" FT terminator 6501..6533 FT /note="putative" XX SQ Sequence 6540 BP; 2036 A; 1318 C; 1547 G; 1639 T; 0 other; gggactaccc taaataagga tgaggggcgg cggtcagccg ccttttttct attacatgtc 60 agcgcggaag cggattttta ttttcatcaa gcgtaaatcc ttctccgagc acatcgtgaa 120 catcgcttac cgctacaaag gcatggggat caatggagtt aatcacgctt ttcagcatca 180 ccaattcatt tttcggcacc acacaataaa gtacatctat atcctctttt gtgtaggaac 240 cttgtccttt caaaatggtg acgccccgtt ccatttcttc aagaatcttt ttctgaatca 300 ggtcgttttt cgaagagatg atcgtagcgc ctttagcagc gtatccgcct tcctgaataa 360 aatcgattaa tcttgccgct acaaatacag ctaccagcgt atacatcgct tctttatagg 420 agagataagt aagcaaagac aaaatgatga cgcaggcatc gaaagcaaac atcgttctgc 480 ccatcggaat cccaaaatac ttattcacta aacgtgcgat gatatcaaca ccgcctgtcg 540 taccgccgaa cttaaaaata atacccagtc cggctccgat gaatacgccg gcaaataaag 600 cggcgagcgc taagtcgtgc tgaaggggca tatggatttc atatcgctga aagatgctga 660 ggaacaaaga caaggctaca gtgccgacaa gggtataaac aaacattgtc ctgccgagca 720 tgtggaaaag ggcataaagc aaaagtgtaa tacctgtaaa accgccctca gccagattgt 780 tctgcatatt gaaatgaacc aagccaaatg aaaaaattgc cgctccgatt aaaataaaaa 840 atatgttttt taatctaatt tctccaagca tcacacaaaa ccccttttcc ttccattaga 900 tagcgtttat attatagtgg atgaaaaaga aaacagcaaa cgtgcttaaa catttgtcaa 960 acgtatctga attagctaac atgtaagagg atgataggag gtttcgttca gtgagtgata 1020 aaacaatgaa agacatacag gctgaagtag accgttacat aggccaattt aaagaaggat 1080 attttagccc gctggccatg atggcgaggc tgactgaaga actgggcgag cttgccagag 1140 aagtgaatca ccgttatgga gaaaaaccaa aaaaagcgac tgaagatgat aaaagcatgg 1200 aagaggaaat aggcgatgtg ctatttgtat tggtttgttt agccaactct cttgatatct 1260 ctttagagga agctcacgac cgagtcatgc ataaatttaa tacaagagat aaagatcgct 1320 ggaccagaaa agaagaagga aagtagagga gatcaagatg tcaaacgaaa caattaaatt 1380 agtcattgcg ggaccgcgtg gaagaatggg gcaggaagct gttaaattgg cagaacgaac 1440 accacatttt gaccttgtag gggccataga ccatacatac gatcagcaaa aattatctga 1500 tgtgatgcct gttgagtcag atgctttcat ttacacagat atccatgcct gttttacaga 1560 aacacaaccg gatgtcttga ttgatttaac aacgcccgaa atcggaaaag tacatacaaa 1620 aattgcatta gagcacggag tccgtccagt tgtcggaaca accggtttct cagaagctga 1680 tttaaaagag ctcacatctt taacagaaga aaaagggatc ggagccatca tcgcgccaaa 1740 ttttgcgctc ggtgcgatac tgatgatgaa attttcaaaa atggctgcca actattttga 1800 ggatgttgag attattgagc ttcatcatga ccagaagctt gacgcaccaa gcggaactgc 1860 gcttaaaaca gcggaaatga tttcagaagt ccgtaaagaa aagcagcaag gacatccgga 1920 tgaaaaagaa attctcccag gagcaagagg agcggagcaa aacggtattc gcttgcacag 1980 gcttcagata cgccatgatt cttataaccg tgcttctttc atgtcaggcg ttaaactgtc 2040 agtcgaacaa gtcatgaaga ttgatcagct tgtgtatggt ttagaaaata tcattgatta 2100 gacgggggga taaacaatga aaattgcttt gatcgcgcat gacaagaaaa aacaggatat 2160 ggttcaattt acgactgcct atcgggatat tttaaagaat catgatctat acgcaaccgg 2220 aaccacaggg ttgaaaattc atgaggcgac aggtcttcaa attgaacgtt ttcaatccgg 2280 ccctttaggg ggagaccagc aaatcggtgc actgatcgct gccaatgcac tcgatcttgt 2340 catttttttg cgcgacccgc tgaccgcgca gccgcatgaa ccggatgtct cggcattaat 2400 ccgtttatgt gatgtgtatt ccattccgct cgccacaaat atgggtactg cggaaattct 2460 tgtgcgcaca cttgatgaag gtgttttcga attccgtgac cttcttcggg gagaagagcc 2520 gaatgtataa tgctgacgtt cttgcttttg gcgcccacag tgatgatgtc gagatcggaa 2580 tgggcggcac aatagcgaag tttgtcaaac aggaaaaaaa agtaatgata tgcgatttga 2640 cagaagcgga actctcttct aacggtacgg tcagtttgcg taaagaagaa gcagctgaag 2700 cagcccgcat attaggcgca gataaaagaa ttcagctaac gcttccagac cgcggcctaa 2760 taatgagtga tcaggcaatt cggtcaattg tcactgtcat cagaatctgt cggccaaaag 2820 cggtttttat gccgtataaa aaggatcgcc atccggatca cggcaatgcg gctgcactgg 2880 tggaagaagc gatcttttcc gccggaatcc ataaatataa agacgaaaaa agccttccgg 2940 cgcataaagt cagcaaggtt tactattata tgataaatgg ttttcatcag ccggattttg 3000 ttattgatat ctcggataca atagaggcaa agaaacaaag cctcaacgcc tacaaaagcc 3060 agtttatccc gtcaaaggat tccgtttcta ctcctctgac gaatgggtat attgaaatcg 3120 ttgaagcgag agaaaagctt tacggtaaag aagcgggcgt ggagtatgcc gaagtttctt 3180 ttccaaacgg atgctgatgc ttgatcatga tgtgcttggg ggcgaacaat gagaaaacta 3240 gggaagcagc ttgctgaaaa gggacatgaa atccatttca tcacatcaag cattccgttt 3300 agactgaata catatcatcc caatattcat tttcatgaag ttgaggttaa tcaatatgct 3360 gtttttaagt atcctccgta tgatttgaca ttggcaagca aaatcgctga ggtggcggaa 3420 cgggagaatt tagacattat ccatgctcac tatgctctcc cgcatgccgt ttgcgcctat 3480 cttgcaaaac aaatgctgaa acgcaatatc ggcattgtta ccactttgca tggcacggat 3540 atcacggtgt taggttatga tccgtctcta aaagatctga tccgttttgc tattgagtca 3600 tcagacaggg tgacggccgt ctcctcagcg cttgcggctg aaacatacga tttaattaaa 3660 ccggagaaaa aaattgaaac gatttataac tttatagacg agcgcgtgta tctgaagaaa 3720 aacacagcgg caattaaaga gaaacatgga attttaccag atgaaaaagt cgtcatccat 3780 gtgtccaact tcagaaaagt taaacgcgtg caggatgtca tccgtgtgtt ccgcaatatc 3840 gctggcaaaa cgaaagcgaa gctgctttta gtcggagacg gtccggagaa atcgacagcc 3900 tgcgagctta tcagaaaata tggcttggaa gaccaagtct taatgcttgg aaatcaagac 3960 cgtgttgaag atctttattc tattagcgat ttgaagctgc tgctatctga aaaagaaagc 4020 tttggccttg tcctgcttga agcgatggct tgcggagtgc cttgtattgg aacaaacatt 4080 ggcggtatcc ctgaggttat aaaaaacaat gtgagcggat ttttggtgga tgtcggtgat 4140 gttacggccg caacagcccg cgcgatgagc attttagaag atgaacagct aagcaatcgt 4200 tttacaaagg cggcaataga gatgcttgaa aatgaatttt cttctaaaaa aattgtcagc 4260 cagtatgaac agatttatgc cgatttagca gaaccggagt gatcacatgg aaaaagtttt 4320 tatcaaagca cttcccgtgc tccgcatctt aatcgaagcg ggccatcagg cttattttgt 4380 cgggggcgca gttcgtgaca gctatatgaa acgaacgatc ggagatgtcg atatcgcgac 4440 agatgcggca cctgatcaag tagaacggct gtttcagcgg actgttgatg taggcaaaga 4500 tgaatctgat tatgttgatt tcagaagacc gtcagaagtg caatttatct catcattaga 4560 agaggatcta aaacgcagag atttaacgat caatgcgatg gccatgacag cggacgggaa 4620 ggtgcttgat tattttggcg gcaagaaaga tattgatcag aaagtgattc gaaccgttgg 4680 aaagcctgag gatagatttc aagaggatgc gcttcgtatg ctgagagccg tacgctttat 4740 gagccagctt ggctttacgc tttcaccgga aacagaagaa gccattgcga aagaaaaatc 4800 actcctctcc catgtttcag tcgaacgaaa aactatagag tttgagaaat tgctgcaggg 4860 aagagcttct cgccaggcgc ttcaaacact cattcaaacg agattgtatg aagagcttcc 4920 tggtttttat cataaacgag aaaacctgat ttcaacgagt gagtttccat tcttctcttt 4980 aacatcccgt gaggagcttt gggctgctct tttaattaac cttggcatag ttttgaaaga 5040 cgcgcccctt ttcctgaaag cctggaagct cccgggaaaa gtgatcaagg aagccattca 5100 cattgccgat acgtttggcc agagccttga cgcaatgaca atgtacagag ctgggaaaaa 5160 agcactgctc tcagcggcca aaatatcgca gcttcggcaa aacgaaaaac tggatgaaaa 5220 gaaactgaag gacattcagt acgcttatca aaacctgccg atcaaaagcc ttaaggatct 5280 tgatatcacg ggtaaggact tgcttgcgct tcgaaaccgg ccggccggaa aatgggtgtc 5340 agaagaatta cagtggatcg agcaggctgt tgtgacaggg aagctctcca atcaaaagaa 5400 acacatagag gagtggctga agacatgcgg tcaacattaa gaaaagacct tattgaatta 5460 ttttctcagg ccggcaatga atttatttcc ggccaaaaaa tcagtgatgc tctcggctgt 5520 tcaagaactg ctgtgtggaa gcatattgaa gagcttcgga aagagggtta tgaagtagaa 5580 gccgttagaa gaaaaggata tcggctcatc aaaaaacccg gaaaactcag tgaaagcgaa 5640 attcgttttg gattaaaaac ggaagtgatg ggccagcatc ttatttacca tgacgttctt 5700 tcaagcacgc aaaaaacggc tcatgagctc gcgaataata acgcaccgga aggcaccctt 5760 gaaggaaacg gtgtttggat gagcctgatt ttgcggcctg acattccgct ccaaaaaaca 5820 ccgcagctga ctctgcttgc tgcagtagct gttgtgcagg gaatagaaga ggcagcaggc 5880 atccaaacgg atattaaatg gccaaatgat attttgatta acggaaaaaa aacagtcggt 5940 atcctaacgg aaatgcaggc tgaagaagac cgcgtacgtt cagtgatcat tgggatcggc 6000 attaacgtta accagcagcc taatgatttt ccagatgaat tgaaggacat cgcgacaagc 6060 ctcagccaag ctgctgggga aaaaattgat cgggccggcg tcatccagca tattttacta 6120 tgctttgaga aacggtaccg ggattatatg acgcacggat ttacgccgat taagctttta 6180 tgggaaagct atgcgctcgg tattggcact aatatgagag ccagaacgtt aaacggaacc 6240 ttttacggta aggcgttagg tatagatgat gaaggcgttc tgcttttaga aacgaacgaa 6300 ggcattaaaa aaatctattc tgccgatatc gaattgggct aatgtgttgg tacaagcccg 6360 ttgattttgg tatacttcca ttgggcagta tcgcctgcga actgcaccta ttattaaaat 6420 agatagacat tgcagcagtc tgccttgatc caaaaaagga ctgggacaga gggatgaaac 6480 tcgccgaact ttagaaagtg aagaatcctt ctcgttgtaa cggaaggttt tttggcttgc 6540 // |
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