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EBI DbfetchID L29005; SV 1; linear; genomic DNA; STD; FUN; 3958 BP. XX AC L29005; XX DT 17-NOV-1994 (Rel. 41, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 3) XX DE Aspergillus niger alpha-L-arabinofuranosidase (abfA) gene exons 1-8, DE complete cds. XX KW abfA gene; alpha-L-arabinofuranosidase; arabinofuranohydrolase; KW extracellular protein; glycosyl hydrolase. XX OS Aspergillus niger OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; OC Eurotiomycetidae; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; OC Aspergillus. XX RN [1] RX DOI; 10.1007/BF00192088 RX PUBMED; 7764056. RA Flipphi M.J., Visser J., van der Veen P., de Graaff L.H.; RT "Cloning of the Aspergillus niger gene encoding alpha-L-arabinofuranosidase RT A"; RL Appl. Microbiol. Biotechnol. 39(3):335-340(1993). XX RN [2] RP 1-3958 RX PUBMED; 8000538. RA Flipphi M.J.A., Visser J., der Veen P., de Graaff L.H.; RT "Arabinase gene expression in Aspergillus niger: Indications for RT coordinated regulation"; RL Microbiology (Reading, Engl.) 140:2673-2682(1994). XX DR CABRI; CBS 120.49. XX CC NCBI gi: 567829 XX FH Key Location/Qualifiers FH FT source 1..3958 FT /organism="Aspergillus niger" FT /strain="CBS 120.49" FT /mol_type="genomic DNA" FT /db_xref="taxon:5061" FT exon <1..1390 FT /gene="abfA" FT /number=1 FT mRNA 1208 FT /gene="abfA" FT /note="start site" FT CDS join(1247..1390,1443..1957,2006..2089,2138..2214, FT 2263..2295,2347..2498,2549..3037,3093..3485) FT /codon_start=1 FT /gene="abfA" FT /product="alpha-L-arabinofuranosidase" FT /EC_number="3.2.1.55" FT /note="NCBI gi: 567830" FT /db_xref="GOA:P42254" FT /db_xref="InterPro:IPR010720" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/Swiss-Prot:P42254" FT /protein_id="AAC41644.1" FT /translation="MVAFSALSGVSAVSLLLSLVQNAHGISLKVSTQGGNSSSPILYGF FT MFEDINHSGDGGIYGQMLQNPGLQGTAPNLTAWAAVGDATIAIDGDSPLTSAIPSTIKL FT NIADDATGAVGLTNEGYWGIPVDGSEFHSSFWIKGDYSGDITVRLVGNYTGTEYGSTTI FT THTSTADNFTQASVKFPTTKAPDGNVLYELTVDGSVAAGSSLNFGYLTLFGETYKSREN FT GLKPQLANVLDDMKGSFLRFPGGNNLEGNSAENRWKWNETIGDLCDRPGREGTWTYYNT FT DGLGLHEYFYWCEDLGLVPVLGVWDGFALESGGNTPLTGDALTPYIDDVLNELEYILGD FT TSTTYGAWRAANGQEEPWNLTMVEIGNEDMLGGGCESYAERFTAFYDAIHAAYPDLILI FT ASTSEADCLPESMPEGSWVDYHDYSTPDGLVGQFNYFDNLNRSVPYFIGEYSRWEIDWP FT NMKGSVAEAVFMIGFERNSDVVKMAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSY FT YVQEMFSRNRGDTIKEVTSDSDFGPLYWVASSAGDSYYVKLANYGSETQDLTVSIPGTS FT TGKLTVLADSDPDAYNSDTQTLVTPSESTVQASNGTFTFSLPAWAVAVLAAN" FT intron 1391..1442 FT /gene="abfA" FT /number=1 FT exon 1443..1957 FT /gene="abfA" FT /number=2 FT intron 1958..2005 FT /gene="abfA" FT /number=2 FT exon 2006..2089 FT /gene="abfA" FT /number=3 FT intron 2090..2137 FT /gene="abfA" FT /number=3 FT exon 2138..2214 FT /gene="abfA" FT /number=4 FT intron 2215..2262 FT /gene="abfA" FT /number=4 FT exon 2263..2295 FT /gene="abfA" FT /number=5 FT intron 2296..2346 FT /gene="abfA" FT /number=5 FT exon 2347..2498 FT /gene="abfA" FT /number=6 FT intron 2499..2548 FT /gene="abfA" FT /number=6 FT exon 2549..3037 FT /gene="abfA" FT /number=7 FT intron 3038..3092 FT /gene="abfA" FT /number=7 FT exon 3092..>3958 FT /gene="abfA" FT /number=8 FT polyA_site 3617 FT /gene="abfA" FT /experiment="experimental evidence, no additional details FT recorded" FT polyA_site 3665 FT /gene="abfA" FT /experiment="experimental evidence, no additional details FT recorded" XX SQ Sequence 3958 BP; 962 A; 982 C; 1100 G; 914 T; 0 other; aagggactga ctgaactcag tgagatgtgc cgcgaagtaa ctaagcgctg tgcctgcagt 60 gaggcgtgat ggaacactgc atccgatctc caagaccccg atatgaacct taatgacaat 120 ggtctaagtt tttttgtcat ctcgcatagc acggtaggcg actaagttga aggataaaga 180 gagcaggatt aggatggctc gagatcaaat tgaaagtaat agagtaacag gggaaaactc 240 taacagttgg ctatgacgaa ggtggcagcg acttcccgga gagagattaa gccgggtaga 300 accaagggac ggctgtggct ggatcaggaa cccaaatcta ttccagtatc ggaggatact 360 caggggtccc gccggggttt tcccttgatc ggagaacatc aaccacatca aaatgcggag 420 taacgatgag ggggaagtgc acggccgacg tcagagtttc gcttgggtgg atctgcaatg 480 tttaggcggc cgactagacc gacagtccag cacctgccct gggagttcaa gacagtggtt 540 tgaccatctt ttgagaagac tgaaattccc gtagattcca tcaagattat tcatgtatca 600 ctagcgactc agcactgggt aagctgcacc cacggatttt ctcagctatc tgaatgtatc 660 agagacaaag atcttcgtgg atggaggcca tcaaccgagc tttaatgcgc caaacctact 720 gtatgactga ataatggatg gatcggcatg tcgtacgatc gggtaagggt cctaaaaatg 780 gagggccggg gaattctggg gttagccgtc gggattattt cggtacgaca aactcactgt 840 tcactttgat ctcggcgtgg ttgcggctaa aaagatgacc ttgaaggtgg agcgaacaac 900 tggaggtgct cggagggacg cggagaagag aggatccaag acatcggggc agggaagtcc 960 atgccgcgtg cagtcacgct tttcctccct ctgctctctt ctcctccaca ttccacattc 1020 cacctccaca ctcctccact cttcctctgg caccttcctc ttcctcgatt tcttggcttc 1080 tcggttgatt gtcttcgacc tcgttgcgat gaccccaccg cattttctgc tgccttggcc 1140 tgtctgatgc cccggttaat ttcacgaaag tccggtcata aaaggcgttg tatcctccct 1200 ttgcaacaat gacaccaggc tcagcttcct ccagacagcc ggcaacatgg tggccttttc 1260 agctctttcg ggcgtcagcg ccgtttcttt actactatcc ctcgttcaaa atgcacacgg 1320 aatctccttg aaggtctcca cccagggtgg caactcatcc agccccatcc tatatggctt 1380 catgtttgag gtaggccgca gactaagcag taaaagacaa ttggttctct gacggtgatt 1440 aggatatcaa tcactcagga gatggaggaa tttatgggca aatgctgcag aaccctggcc 1500 ttcagggaac ggcgcctaat ctgactgcct gggcggctgt cggtgacgct accatcgcca 1560 ttgatggcga cagtccattg acctctgcca tccccagcac catcaagctt aatattgcgg 1620 acgatgctac cggtgcggtg ggtctcacca atgagggata ttggggcatc ccagtcgatg 1680 gcagcgaatt ccatagttcc ttctggataa agggagatta ctccggcgac atcaccgtcc 1740 gactggttgg aaactacacc ggcacggagt acggctctac cactatcacc catacgtcca 1800 cagcagacaa cttcacccaa gcctccgtca agttccccac caccaaggct ccagatggca 1860 acgttttgta cgagctcaca gttgatggaa gcgtggctgc tggctcgtct ttgaacttcg 1920 gctacttgac gctttttggc gaaacctata agtcaaggtt tgcttcccta tactccgaag 1980 agtgaattag gggctaattg tgtagggaaa atggcctgaa gccccagctt gccaatgtgt 2040 tggatgatat gaaaggatcc ttcctgagat ttcccggcgg taacaacctg taagtctcag 2100 ctcgcccggt aagtgtatag aagctcatca gaggtagtga gggaaacagc gcagaaaacc 2160 gctggaagtg gaacgagaca atcggcgatc tttgtgatcg tcccggacgt gaaggtatgt 2220 ctcattatta ggattgaagc attcatccct gacggtatat aggcacttgg acttactata 2280 acaccgacgg actgggtaag taaagggcta tatacaagta cctagatact gtactaacgc 2340 ttgtaggcct tcacgaatac ttttactggt gtgaggattt ggggctcgta ccggtgctcg 2400 gtgtctggga tgggttcgct ctggagtcgg gtggcaacac ccccctcacg ggcgacgcac 2460 tgacccctta tatcgacgat gtcttgaacg agctcgaggt atgttgagcg gcatatcaaa 2520 ttgatagctg aagctaaccc attggcagta catcttgggt gatacgagca cgacctatgg 2580 agcgtggcgc gcggcaaacg gacaggagga gccgtggaac cttaccatgg tcgagattgg 2640 caatgaggac atgctgggag gcggatgcga gtcctacgcg gaacgtttca ctgccttcta 2700 tgatgcgatt catgctgctt atccggacct tatcctgatt gccagcacca gcgaggcgga 2760 ttgcttgccc gagtcaatgc ccgagggtag ctgggtcgac taccacgact acagcacgcc 2820 tgatggactg gtgggccagt tcaactactt cgacaattta aaccgctcgg taccatactt 2880 catcggcgag tactcgcgct gggagattga ctggcccaac atgaagggat cggtcgctga 2940 agccgtcttc atgatcgggt tcgagaggaa cagcgacgtg gtgaagatgg cggcgtatgc 3000 gcctttgctc cagctaatca actcgactca gtggacggta agtcacgact gagcagcggg 3060 gtttcaggta tgaatgagct aacgagtggt agccggacct gatcggatac acgcagtcac 3120 ccggtgacat tttcctgtcg accagctact acgtgcagga gatgttctcg cgcaaccggg 3180 gtgatacaat taaggaggtg acgtcggaca gcgacttcgg accgttgtac tgggttgcgt 3240 cgagcgccgg ggactcgtac tacgtgaagc tggccaacta tggctccgag acgcaagacc 3300 tcacggtgag catcccagga acgagcacag gcaagttgac ggtgctggcg gacagtgatc 3360 cggatgcgta taactcggac acccagacgc tggtcacgcc gagtgaatcg acggtgcagg 3420 cgagcaatgg cacttttacc tttagtttgc cggcatgggc ggtggctgtc ctggcggcga 3480 actagcgttg attggggcga gctcgtatgg gcggcaagtc gaatattatc tgcaggtgtg 3540 gtgtcatgta ctgcagtatt tctgattaac gatagagaga tagatccatg ctatatacct 3600 gcttgtatat ccaaggcatt tatccaatga taggcaacgc caccacacgt ggctatgcac 3660 atactagtca ggaggtagta gagtgactga ctgctatgta gcggtcggcc ggggatagca 3720 gttgaatgac cccaattaac agaaccgcct gactctccaa cgtgtacctc taggttattt 3780 tatatttctt gttaaagccc cccagaaaca caaccgaaga atcaatggat gcgatgaaaa 3840 caaggcactg gtaagcgaag gagggaaaaa caagcggatt ggttggttgt ggcccgatgc 3900 aaacgggcgg cctctccact cgaattggac agaagcgaag gccgtgcgcc gagacggg 3958 // |
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