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EBI DbfetchID L22756; SV 1; linear; genomic DNA; STD; PRO; 3948 BP. XX AC L22756; XX DT 05-OCT-1993 (Rel. 37, Created) DT 06-JUL-1999 (Rel. 60, Last updated, Version 5) XX DE Bradyrhizobium japonicum nolM, nolN, nolO and nodZ genes, complete cds. XX KW . XX OS Bradyrhizobium japonicum OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; OC Bradyrhizobiaceae; Bradyrhizobium. XX RN [1] RP 1-3948 RX PUBMED; 8262943. RA Luka S., Sanjuan J., Carlson R.W., Stacey G.; RT "nolMNO genes of Bradyrhizobium japonicum are co-transcribed with RT nodYABCSUIJ, and nolO is involved in the synthesis of the RT lipo-oligosaccharide nodulation signals"; RL J. Biol. Chem. 268(36):27053-27059(1993). XX RN [2] RP 1-3948 RX PUBMED; 8300517. RA Stacey G., Luka S., Sanjuan J., Banfalvi Z., Nieuwkoop A.J., Chun J.Y., RA Forsberg L.S., Carlson R.; RT "nodZ, a unique host-specific nodulation gene, is involved in the RT fucosylation of the lipooligosaccharide nodulation signal of Bradyrhizobium RT japonicum"; RL J. Bacteriol. 176(3):620-633(1994). XX RN [3] RP 1-3948 RX DOI; 10.1016/S0378-1097(97)00021-9 RX PUBMED; 9084141. RA Luka S., Stacey G.; RT "Molecular studies on a new genetic locus linked to the common nodulation RT genes in Bradyrhizobium japonicum"; RL FEMS Microbiol. Lett. 148(2):145-151(1997). XX FH Key Location/Qualifiers FH FT source 1..3948 FT /organism="Bradyrhizobium japonicum" FT /strain="USDA 110" FT /mol_type="genomic DNA" FT /db_xref="taxon:375" FT gene 37..210 FT /gene="nolM" FT CDS 37..210 FT /codon_start=1 FT /transl_table=11 FT /gene="nolM" FT /note="putative" FT /db_xref="UniProtKB/TrEMBL:Q45267" FT /citation=[1] FT /protein_id="AAB58809.1" FT /translation="MQCHDAFRGSSRVTWSVRAACETALRSRDRASSTAACSADRTLQS FT RVVLPGTRTGCA" FT gene 260..643 FT /gene="nolN" FT CDS 260..643 FT /codon_start=1 FT /transl_table=11 FT /gene="nolN" FT /note="putative" FT /db_xref="UniProtKB/TrEMBL:Q45268" FT /citation=[1] FT /protein_id="AAB58810.1" FT /translation="MLSIGLSGGLDRIYESSPELPNTFLHDGAAVLVQDGRVIAAVEEE FT RLNRVKQSNKFPSNSIRYCLSTAGVELGDIDRIAFYATEAYCKAMLERLSVSQPVPLDP FT KLLLRQLLARELGAEIDPSGFPS" FT gene 664..1740 FT /gene="nolO" FT CDS 664..1740 FT /codon_start=1 FT /transl_table=11 FT /gene="nolO" FT /note="GTG start codon" FT /db_xref="GOA:Q45269" FT /db_xref="InterPro:IPR003696" FT /db_xref="UniProtKB/Swiss-Prot:Q45269" FT /citation=[1] FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB58811.1" FT /translation="MSAFAMSGFEQSLVFAIDGGGDFLSGLMAVGSGTVIAQLVSFPEH FT NSLGLFYLETIRYLGCGMFDEYKVMGLAPYGDPDRYRELFAQFYELLDSGGYRVHLDRI FT GPALLRNIQVRRKGMPFTQQHRDVSASLQEALERIVFHTLRHHRKATGMTRLCLAGGVA FT HNCTLNGKLLYSGLFDDIFVQPAAHDAGCALGAALMVSSELGRPAPRERLPDVYWGPDL FT GNEQATELELNAWSGHLDIQRSDDIASSAADWMANGAVIGWVQGRSEFGPRALGNRSIL FT ADPRPAENKDRINAVVKKRETYRPFAPSALEEDASEFFELPDGTRQLPFMNFVVRVREA FT KGNVLGAITHVDGTARLQ" FT mRNA complement(<2089..2533) FT /note="ORFA" FT /citation=[3] FT /experiment="experimental evidence, no additional details FT recorded" FT CDS complement(2089..2439) FT /codon_start=1 FT /transl_table=11 FT /note="GTG start codon; ORFA" FT /db_xref="UniProtKB/TrEMBL:Q45270" FT /citation=[3] FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB58812.1" FT /translation="MTGRVLSIRSSFLQRCCIDLPEARCPMPRSASDGLVPSHARMGVA FT MRHESWLCSALYIIVTASRVQRMQANAPKLPYEPQFLHKIFTLGLVQQGCVEKRPERRL FT ALDSHQDLEKLR" FT mRNA 2405..>3427 FT /gene="nodZ" FT /citation=[2] FT /experiment="experimental evidence, no additional details FT recorded" FT gene 2405..>3427 FT /gene="nodZ" FT CDS 2453..3427 FT /codon_start=1 FT /transl_table=11 FT /gene="nodZ" FT /db_xref="GOA:Q45271" FT /db_xref="InterPro:IPR008716" FT /db_xref="UniProtKB/Swiss-Prot:Q45271" FT /citation=[2] FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB58813.1" FT /translation="MKFYRCSSPAPRFQAVTPGEKIRETSVLTSLVQPGAREKARQMVS FT GSSNDRFVVSRRRTGFGDCLWSLAAAWRFAKQTGRTLAIDWRGSCYLDEPFTNAFPVFF FT EPVEDIGGVRVICDDDINTRSFPGPFFPTWWNKPSFDCIYRPDEQIFRERDQLDQLFQS FT QRDSDANTVVCDACLMWRCDQEAEREIFRSIKPRPEIQARIDAIYREHFEPYSVIGIHV FT RHGNGEDIMACPLLGGHGAALRQIYNAIDEARSLSHAKPVRAFLCTDSALVLEQVSVKF FT PDVFAIPKQFQAPQAGPLHHPPSELKAAFLPSPRCISLPAATR" XX SQ Sequence 3948 BP; 821 A; 1087 C; 1179 G; 861 T; 0 other; ttgacgtgag ttcagcgaaa cggagaagtc aaagcgatgc agtgtcatga tgcgttccgc 60 ggtagctcgc gagtgacctg gtctgtcaga gcagcttgtg aaacggcctt gagaagccgc 120 gatcgagcca gctctacggc cgcctgttcg gccgatcgga ccttgcaaag tcgtgttgtg 180 ctgcctggca cgcgcaccgg ctgcgcgtga ctgtacagat tagatcggtg ggacggcatg 240 gccttccatg gagaacggga tgttgagcat aggactgagt ggcggccttg acagaatcta 300 tgaaagctct ccggagctgc cgaatacatt tcttcacgat ggcgctgcgg tacttgtgca 360 ggacggccgc gtaattgctg ctgtcgaaga ggagcgcctc aaccgcgtca agcagtccaa 420 caagttcccc agcaattcga tccgatactg cctttctacc gcaggagtcg agctcggcga 480 catcgaccgt atcgcgttct acgcgactga agcttactgc aaagccatgc tcgagcgcct 540 ttctgtttct cagcccgttc cgttggaccc caaactgttg ctgcggcagc tgttggcacg 600 ggaattaggg gccgagatcg atccgtccgg gtttccttcg tgaatcacca cgaagtacat 660 gccgtgagcg cgtttgccat gtccgggttc gagcaaagtc tggtgtttgc gatcgacggc 720 gggggcgatt ttctctcagg cttaatggcg gtagggtccg ggaccgtaat tgcgcagctt 780 gtaagtttcc cggaacacaa ctctcttggg ctgttctatc tcgagacgat ccgatatctc 840 ggctgcggga tgttcgacga atacaaagtg atggggcttg caccgtatgg tgatcccgat 900 cgctatcgcg agctcttcgc gcagttctac gagttgttgg acagcggtgg ctatcgcgtt 960 cacctggatc gaatcggacc agcccttttg cgcaacatcc aggttcggcg aaagggaatg 1020 ccattcaccc aacagcatcg agatgtcagc gcgtcgctgc aggaagcgct ggagcggatc 1080 gtgtttcaca ccctgcggca ccatcgtaaa gcgacgggca tgacacgcct gtgcctagct 1140 ggcggggtgg cccataattg cacgctgaac ggtaagctgc tttattccgg gctatttgac 1200 gacatctttg ttcaacccgc ggcgcacgac gccggttgcg cactcggcgc tgcattaatg 1260 gtatcaagcg agctaggcag gccagcgccg cgcgagcgac tgccggacgt ttattggggg 1320 cccgatcttg ggaacgagca agccacagag cttgagctca acgcatggtc aggccacctc 1380 gacattcaac gaagtgatga catagcatcc agtgcggcgg actggatggc aaatggcgct 1440 gtaatcggct gggttcaggg gcgctctgag ttcggcccac gtgcgcttgg taaccgcagc 1500 attctagcgg acccgcggcc tgcggaaaac aaggatcgca tcaacgcggt ggtcaagaag 1560 cgcgagacgt atcgcccctt tgcgccatct gcattagagg aggatgcgag cgagttcttt 1620 gagctccccg acggcacgcg gcagctcccc ttcatgaact tcgtagttcg cgtgcgtgaa 1680 gccaagggta acgtgctcgg tgcgatcacg cacgttgatg ggacggctcg gctgcagtga 1740 tgctggccgc ttcctgacga ggaacggccc aacaacaagt ccgtccagat cagtcgtcaa 1800 aaacgtggtg atcgcatctg acacggactg cacgatcggc tcggcattgt tgttaaatga 1860 ggtatttaga agaatcggaa ggctcgttcg cttcttgaac gcattaatga cgtcccagta 1920 gccggggttt gtcttgcgcg atacggtctg caggattgga gtgcgctggc tgcgtcattg 1980 ccgccgtacg catcccttca tcgtgttcgc tcccacatag cgccagatcg gcaggaaacg 2040 gtctgcgaga tccgcatggg acattccgcc cactctagta tgcgtatctc acctgagctt 2100 ttcgagatct tgatgcgaat cgagggcgag gcgtcgctcg ggtcgctttt cgacacagcc 2160 ctgctggacc aggccaagcg tgaagatctt gtgaaggaat tgcggctcgt atgggagctt 2220 cggggcgttc gcctgcatcc gctgcacgcg gcttgccgtc acgataatgt acaaagcgga 2280 acatagccat gactcatggc gcatggccac gcccatgcgt gcatgtgagg ggaccaggcc 2340 atccgatgca gagcggggca tcgggcatcg ggcttcgggc aggtcgatgc aacaccgttg 2400 aagaaaggac gatcgtattg agagaacgcg gcccgtcacg gatagccctg ctatgaagtt 2460 ctaccgatgc agctcgccgg caccgcgatt tcaggccgtg acgccgggcg agaagatacg 2520 cgagacgtct gtactgacgt ctcttgtcca accaggagcg cgcgaaaagg caaggcagat 2580 ggttagcggt tcgagcaatg atcggttcgt agtgtcccgg cgacgtacgg ggtttggcga 2640 ctgtctgtgg tcactcgcgg cagcctggcg atttgcaaag cagacaggac ggacgctagc 2700 cattgattgg cggggatctt gttatcttga tgaaccattc accaatgcct ttccagtctt 2760 cttcgaaccg gttgaagaca ttggcggagt gcgagtaatt tgcgatgacg acatcaatac 2820 gcgttcgttt ccaggaccat tctttccaac atggtggaac aagccatctt tcgattgcat 2880 ctatcgaccg gacgagcaga ttttcaggga acgcgatcaa ctcgatcaac tgttccaaag 2940 tcagagagat agtgacgcta acacggttgt gtgtgatgcc tgcctgatgt ggcgctgcga 3000 tcaggaagcg gaacgcgaaa tcttccggag tattaagccg cggcctgaaa ttcaggcccg 3060 gattgatgct atctaccgcg agcactttga gccgtacagc gtaatcggca ttcatgtccg 3120 gcatggcaat ggcgaagata ttatggcatg ccccttactg ggcggacacg gagccgcgtt 3180 gcggcagatc tacaatgcca ttgatgaggc caggagttta tcccacgcaa aacctgtgag 3240 ggcgttcctg tgcacggaca gtgcgctcgt cctcgagcag gtttcggtta aatttcccga 3300 tgtcttcgcg attccaaagc agttccaggc gcctcaagcg ggcccattgc accatccgcc 3360 ctcggagctg aaggcggctt ttctgccctc accgagatgt atctccttgc ccgctgcgac 3420 acggtgatcc gttttccgcc aacgagcgct tttacgcgct atgcgcgtct tttcgcccca 3480 cgcgttatag aattcgattt gaacgatccg ggccggttga tcctgattga agacaactcg 3540 caagcgctta tggcttcgtg aaagtcgcaa acccgcgtga tcgatctcac cgccgctctt 3600 tacgtccgat agccgtggaa gttcttctcc gggcgacgat tttctggccg cgggctgtca 3660 ttgccgcaac gttccagggg cgaagagaac gaagccgcgg ccgaatgcgt tcggctaagg 3720 cgcggcttcg acaacagagc cctaaagtgc cgctgcgttt tacagaagga gcacgccttc 3780 gtcttcgctt cgggcgggcc gcagacggaa gctaaacaac gctcaatcac ggatgaacat 3840 ttcagctcgc cagctcatgc ttggaactag cgccgcgaaa tccagtgccg ctcagagcat 3900 ggcgcgatag atcaaaagtg gccgccgacg aatctaacgt gcaagctt 3948 // |
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