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EBI DbfetchID L18927; SV 1; linear; genomic DNA; STD; PRO; 4392 BP. XX AC L18927; XX DT 17-AUG-1993 (Rel. 36, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Buchnera aphidicola Arginyl tRNA synthetase (argS) gene, 5' end; ORF1; DE ribonuclease H (rnh) gene, complete cds; DNA Polymerase III epsilon subunit DE (dnaQ or mutD) gene, 5' end; complete 16S ribosomal RNA gene, promoter DE region. XX KW 16S ribosomal RNA; arginyl-tRNA synthetase; argS gene; KW DNA polymerase III epsilon subunit; dnaQ gene; mutD gene; ribonuclease H; KW rnh gene; rrs gene. XX OS Buchnera aphidicola OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Buchnera. XX RN [1] RP 1-4392 RX DOI; 10.1016/0378-1119(93)90003-L RX PUBMED; 7507875. RA Munson M.A., Baumann L., Baumann P.; RT "Buchnera aphidicola (a prokaryotic endosymbiont of aphids) contains a RT putative 16S rRNA operon unlinked to the 23S rRNA-encoding gene: sequence RT determination, and promoter and terminator analysis"; RL Gene 137(2):171-178(1993). XX DR RFAM; RF00005; tRNA. DR SILVA-SSU; L18927. XX FH Key Location/Qualifiers FH FT source 1..4392 FT /organism="Buchnera aphidicola" FT /mol_type="genomic DNA" FT /note="host: Schizaphis graminum" FT /db_xref="taxon:9" FT CDS complement(<1..393) FT /codon_start=1 FT /transl_table=11 FT /gene="argS" FT /product="arginyl-tRNA synthetase" FT /db_xref="GOA:Q08888" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q08888" FT /protein_id="AAA17432.1" FT /translation="MNIKYLIKKDIEQALIKINSNYTYEVFIISSKKIELGHYQVDNLM FT KISSRLKIKPYKLFQKILILIEKKKIYKKIIFSHPGFINIFIKNEWLSEKLEIPFISSR FT LGVKYIYPKKNIVIDYSSPNIAKEMHV" FT -35_signal 609..614 FT /note="deduced by comparison with E. coli rrnB promoter FT region" FT -10_signal 629..634 FT /note="deduced by comparison with E. coli rrnB promoter FT region" FT misc_feature 658..666 FT /standard_name="box A" FT /function="box A is involved in antitermination of the rrn FT operon" FT /note="deduced by comparison with E. coli rrnB promoter FT region" FT misc_feature 685..692 FT /standard_name="box C" FT /function="box C might be involved in antitermination of FT the rrn operon" FT /note="deduced by comparison with E. coli rrnB promoter FT region" FT rRNA 768..2319 FT /gene="rrs" FT /product="16S ribosomal RNA" FT /note="start and stop sites come from a comparison to the FT E. coli 16S rRNA gene" FT stem_loop 2410..2476 FT /note="might form a stem-loop structure that would function FT as a terminator for the rrs gene; putative" FT stem_loop 2482..2543 FT /note="might form a stem-loop structure that would function FT as a terminator for the rrs gene; putative" FT CDS complement(2548..3300) FT /codon_start=1 FT /transl_table=11 FT /note="ORF1" FT /db_xref="GOA:Q08889" FT /db_xref="HSSP:1QH5" FT /db_xref="InterPro:IPR017782" FT /db_xref="UniProtKB/Swiss-Prot:Q08889" FT /protein_id="AAA17433.1" FT /translation="MILTSISVLKDNYVWILYNDNCSCIIIDPGVSEDIIKKIEKKNWK FT LIAILLTHNHIDHVGGVEEIIRRYPNVTVFGPEETKTRNVNKIVKQGDVIKLLKSEIHV FT FLTPGHTLGHVSYYLKPYIFCGDTLFSGGCGRVFKNKFFDMYQSINFIKSLPKKTILCC FT SHEYTLSNLNFAMSILPFDKKIKKYYKKIKKHISQNKTSLPVSLETEKKINIFLRTNEK FT TIKKAMGLKKDTSSFEVFILLRKEKDDF" FT CDS complement(3324..3809) FT /codon_start=1 FT /transl_table=11 FT /gene="rnh" FT /product="ribonuclease H" FT /db_xref="GOA:Q08885" FT /db_xref="HSSP:2RN2" FT /db_xref="InterPro:IPR002156" FT /db_xref="UniProtKB/Swiss-Prot:Q08885" FT /protein_id="AAA17434.1" FT /translation="MLKLVKMFSDGSCLGNPGSGGYGTILRYKLHEKILTSGFFLTTNN FT RMELMGVICGLESLKESCIVEITIDSQYVKQGITNWIATWEKKKWKTTKKKLIKNLDLW FT LRINAVIKNHHITWFWVKAHMGHLENERCDKIARQSAQSPSVKDFFYENNFYQNKNL" FT CDS 3856..>4392 FT /codon_start=1 FT /transl_table=11 FT /gene="dnaQ" FT /product="DNA polymerase III epsilon subunit" FT /note="other gene name=mutD" FT /db_xref="GOA:Q08880" FT /db_xref="HSSP:1J54" FT /db_xref="InterPro:IPR006055" FT /db_xref="UniProtKB/Swiss-Prot:Q08880" FT /protein_id="AAA17435.1" FT /translation="MNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGK FT KFHTYIKPNRLIESDASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSELIIHNASFDVG FT FINQEFSMLTKKIQDISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGA FT ILDAFLLGKLYLLMTS" XX SQ Sequence 4392 BP; 1477 A; 696 C; 758 G; 1461 T; 0 other; aacatgcatt tcttttgcaa tattgggaga agaataatct attacaatat tttttttagg 60 ataaatatat ttgacaccaa gacgagatga aataaatggt atttctaatt tttcagataa 120 ccattcattt ttaataaaaa tgttaataaa tcctggatgt gaaaaaatta tttttttata 180 gatctttttt ttttctataa gaatcagtat tttttgaaat aatttatagg gttttatttt 240 caatctagaa gatattttca ttagattgtc aacttgataa tgaccaagtt ctattttttt 300 acttgatata ataaatactt cataagtgta attactatta attttgatta aagcttgttc 360 aatatctttt tttattagat attttatatt cataaataaa taaccttttt aataaattaa 420 aaaaataaat ttttagaaaa caagatttgc tataaatttt ttttaaatgt cgttaaatac 480 aatatattat tttaattcgt cttaatattt tttatttata atgttattat aatttctttc 540 tctttattaa tataacttac tttaataaat ttttttataa aattaaaaat taattttatt 600 aaaaaaggtt gacaacacga taaaaaaatg taatctcata taaagtttaa aaacaacgct 660 ctttaacaaa ataattagat aatctgtgtg ggcacagaaa attaagtaca agattacttt 720 tttaaaaaaa tcttaaagtt attttttctt taagaaaaaa gattttaaaa ctgaagagtt 780 tgatcatggc tcagattgaa cgctggcggc aagcctaaca catgcaagtc gagcggcagc 840 gaaaagaaag cttgctttct tgtcggcgag cggcaaacgg gtgagtaata tctggggatc 900 tgcccaaaag agggggataa ctactagaaa tggtagctaa taccgcataa agttgaaaaa 960 ccaaagtggg ggaccttttt taaaggcctc atgcttttgg atgaacccag acgagattag 1020 cttgttggta aggtaaaagc ttaccaaggc aacgatctct agctggtctg agaggataac 1080 cagccacact ggaactgaga cacggtccag actcctacgg gaggcagcag tcgggaatat 1140 tgcacaatgg gcgaaagcct gatgcagcta tgccgcgtgt atgaagaagg ccttagggtt 1200 gtaaagtact ttcagcgggg aggaaaaaat taaaactaat aattttattt tgtgacgtta 1260 cccgcagaag aagcaccggc taactccgtg ccagcagccg cggtaatacg gagggtgcga 1320 gcgttaatca gaattactgg gcgtaaagag cacgtaggtg gttttttaag tcagatgtga 1380 aatccctagg cttaacctag gaactgcatt tgaaactgaa atgctagagt atcgtagagg 1440 gaggtagaat tctaggtgta gcggtgaaat gcgtagatat ctggaggaat acccgtggcg 1500 aaagcggcct cctaaacgaa tactgacact gaggtgcgaa agcgtgggga gcaaacagga 1560 ttagataccc tggtagtcca tgccgtaaac gatgtcgact tggaggttgt ttccaagaga 1620 agtgacttcc gaagctaacg cgttaagtcg accgcctggg gagtacggcc gcaaggctaa 1680 aactcaaatg aattgacggg ggcccgcaca agcggtggag catgtggttt aattcgatgc 1740 aacgcgaaaa accttacctg gtcttgacat ccacagaatt ttttagaaat aaaaaagtgc 1800 cttcgggaac tgtgagacag gtgctgcatg gctgtcgtca gctcgtgttg tgaaatgttg 1860 ggttaagtcc cgcaacgagc gcaaccctta tcccctgttg ccagcggttc ggccgggaac 1920 tcagaggaga ctgccggtta taaaccggag gaaggtgggg acgacgtcaa gtcatcatgg 1980 cccttacgac cagggctaca cacgtgctac aatggtttat acaaagagaa gcaaatctgt 2040 aaagacaagc aaacctcata aagtaaatcg tagtccggac tggagtctgc aactcgactc 2100 cacgaagtcg gaatcgctag taatcgtgga tcagaatgcc acggtgaata cgttcccggg 2160 ccttgtacac accgcccgtc acaccatggg agtgggttgc aaaagaagca gatttcctaa 2220 ccacgaaagt ggaaggcgtc taccactttg tgattcatga ctggggtgaa gtcgtaacaa 2280 ggtaaccgta ggggaacctg cggttggatc acctccttaa aaatatatac tttttttgaa 2340 agtgcccaca caaattatct aataaaattt tgtttaataa aggcttgtag ctcagatggt 2400 aagagcgcac ccctgataag ggtgaggtcg gtggttcaac tccactcagg cctaccatag 2460 taaacattat ctgggggcta tagctcagct gggagagcgc ctgccttgca cgcaggaggt 2520 cagcggttca atcccgctta gctccaatta aaaatcatct ttctctttcc ttagtaaaat 2580 aaaaacctca aagctgctcg tgtctttttt taaccccatt gcttttttaa ttgtcttctc 2640 atttgttctt aaaaaaatat ttattttttt ttcagtttca agagaaactg gaagacttgt 2700 cttattctga gaaatatgct tttttatttt cttatagtat ttttttattt ttttatcaaa 2760 tgggagaata gacatagcga aatttaaatt agatagagta tattcatgag aacaacataa 2820 aattgttttt tttggtaatg attttataaa attaatagat tgatacatat caaaaaattt 2880 atttttaaaa acacgaccgc aacctcctga aaataaagta tctccgcaaa aaatatatgg 2940 ttttaaataa tatgaaacat gtcctaacgt atgacctggt gtaagaaaaa catgaatttc 3000 actttttaac aattttatta catctccttg ttttacaatt ttatttacat ttcttgtttt 3060 tgtttcttca ggaccaaaaa cagttacgtt tggatatctt cttataattt cttctactcc 3120 tcctacatga tcaatatgat tatgagttaa taaaattgct attagtttcc aatttttttt 3180 ttctattttt tttattatat cttctgaaac accaggatca ataattatac aagaacaatt 3240 atcgttgtat agaatccaaa cgtaattatc ttttaataca gaaatacttg ttaaaatcat 3300 gtttaattcc attaaaaaaa attttataaa tttttgtttt gataaaagtt attttcataa 3360 aaaaaatctt taactgaagg actttgagca gattgacgtg ctattttatc acatctttcg 3420 ttttctaaat gacccatatg ggctttaacc caaaaccatg taatatgatg attttttata 3480 acagcattga tacgtaacca taaatctaaa ttttttatta attttttttt agttgttttc 3540 catttctttt tctcccatgt agcaatccaa tttgtaatac cttgctttac atattgactg 3600 tcaattgtaa tttcaactat gcaagattct ttaagagatt ctaaaccaca tattacaccc 3660 attaattcca ttctattatt tgtagttaaa aaaaaaccgg aagttaatat cttttcatgt 3720 aatttataac gtaatattgt accatatcca cctgatccag gatttcctaa acaagaacca 3780 tctgaaaaca ttttaactaa ttttaacatt ttaataatta ttccaatatt aaataactta 3840 aatagatcat ttatgatgaa taatacacaa agaataattg ttttagatac tgaaacaaca 3900 ggaatgaata gtgtaggtcc accttatctt aatcatagaa ttattgaaat tggtgccatt 3960 gaaataatta atcgtcgttt tacagggaaa aaatttcata cttatattaa acctaataga 4020 ttgatagaat ctgacgcttc aaaaattcat ggtattactg atgatttttt atcagataaa 4080 ccatctttta aagacatagc taaagatttt tttaattata taaaaaattc agaattaata 4140 attcataatg catcttttga tgtaggtttc ataaatcaag aattttcaat gttaactaaa 4200 aaaatacaag atatatcaaa tttttgtaat attatagata cattaaagat agctagaaaa 4260 ttatttcctg gtaaaaaaaa taccttagac gcattatgta tgcgttataa aataaaaaat 4320 tctcatagag ttttacatgg tgctatttta gatgcttttc tattaggtaa attatatctt 4380 ttaatgacta gt 4392 // |
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