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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   L18911; SV 1; linear; mRNA; STD; PLN; 1540 BP.
XX
AC   L18911;
XX
DT   11-JUN-1993 (Rel. 36, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Lilium longiflorum potential pectate lyase mRNA, complete cds.
XX
KW   pectate lyase.
XX
OS   Lilium longiflorum (trumpet lily)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Liliales; Liliaceae; Lilium.
XX
RN   [1]
RP   1-1540
RA   Kim S.-R., Finkel D.J., An G.;
RT   "Abundancy patterns of lily pollen cDNAs: characterization of three
RT   pollen-preferential cDNA clones";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1540
FT                   /organism="Lilium longiflorum"
FT                   /cultivar="Nellie White"
FT                   /mol_type="mRNA"
FT                   /dev_stage="mature flower"
FT                   /tissue_type="pollen"
FT                   /db_xref="taxon:4690"
FT   5'UTR           complement(1..69)
FT                   /note="putative"
FT   CDS             70..1374
FT                   /codon_start=1
FT                   /product="pectate lyase"
FT                   /note="putative"
FT                   /db_xref="GOA:P40973"
FT                   /db_xref="InterPro:IPR002022"
FT                   /db_xref="InterPro:IPR007524"
FT                   /db_xref="InterPro:IPR011050"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="InterPro:IPR018082"
FT                   /db_xref="UniProtKB/Swiss-Prot:P40973"
FT                   /protein_id="AAA33398.1"
FT                   /translation="MKAAQFFLYSLLFFASAALSSANIAEFDEYWQKKSKVAQAKAKKA
FT                   YTPHPEEVTNHFNKAVHSSFEGNSTRRNLRTNKLGQCLATNPIDRCWRCKKNWSANRKD
FT                   LVKCVKGFGRKTTGGAAGEIYVVTDPSDDSLTDPKFGTLRWGVIQDRPLWIIFGKSMVI
FT                   RLKQELIINNDKTIDGRGANVQIAGGAQLTVQFVHNVIIHGIHIHDIKPGEGGLIRDSE
FT                   KHSGIRTRSDGDGISIIGSSNIWIDHVSLARCSDGLIDVILGSTAITISNCHLTEHDDV
FT                   MLLGASDTYTQDEIMQVTVAFNHFGRGLVQRMPRCRYGFVHVVNNDYTHWIMYAVGGSQ
FT                   HPTIISQGNRYIAPHIEAAKEVTKRDYAEPAEWSKWTWKSQGDLFVSGAFFVESGGPFE
FT                   NKYSKKDLIKAKPGTFVQRLTRFSGALNCKENMEC"
FT   3'UTR           complement(1375..1540)
FT   polyA_site      1540
XX
SQ   Sequence 1540 BP; 413 A; 380 C; 398 G; 349 T; 0 other;
     ctggggtaat cggctggtct ggtggttcct tgcaattgaa ccatcagcca gaccaaccca        60
     tcggccgcca tgaaagccgc tcagttcttc ctctactctc tcctcttctt tgcttcagcg       120
     gccttatcaa gcgcgaacat cgccgagttc gacgagtact ggcagaagaa atccaaggtc       180
     gcacaggcca aggccaagaa ggcatataca cctcacccag aggaggtgac caaccacttc       240
     aacaaggctg tccacagttc tttcgagggt aacagcacca gaagaaacct gcgaaccaat       300
     aagctgggtc agtgcttagc cactaaccct atcgaccgct gctggcggtg caagaagaac       360
     tggtctgcca atcgcaagga cctcgttaag tgtgtcaagg gctttgggcg gaaaaccacc       420
     ggtggtgccg caggtgaaat ctacgttgtt accgacccat ctgacgacag tctaacggac       480
     ccaaagtttg gtactctccg atggggtgtt atccaagacc ggcctctctg gatcattttt       540
     ggcaagagca tggtcatccg tctcaaacag gagctcatca tcaacaatga caagaccatc       600
     gatggtcgtg gcgccaatgt ccaaattgcc ggtggagccc aactcaccgt ccaattcgtg       660
     cacaatgtca tcatccacgg tatccacatc cacgatatca agcccgggga ggggggtctc       720
     atccgtgact ccgagaaaca tagtgggata aggaccagga gcgatggcga cggtatctcg       780
     attattggat catcaaatat ctggatcgac catgtctcgt tggcccgatg ctctgatgga       840
     ctcattgatg tcatcttagg ctccactgcc atcacgattt caaattgcca cttaaccgag       900
     catgacgatg ttatgcttct gggcgctagc gatacctaca cacaagatga gatcatgcaa       960
     gttacggtgg ccttcaacca cttcggaaga ggtctcgtgc agaggatgcc aaggtgccgt      1020
     tatggatttg tgcatgtcgt gaacaacgac tacactcact ggattatgta tgcggtagga      1080
     ggaagccagc acccaacaat catcagccaa ggcaatcgct acatcgctcc ccatatcgaa      1140
     gcagctaaag aggtgaccaa gagggattat gcggagccag cagagtggag caaatggact      1200
     tggaagtccc agggtgactt gtttgtcagt ggagccttct ttgtagaatc tggaggtccc      1260
     tttgagaaca agtactctaa gaaggactta atcaaagcca agccgggaac attcgtgcag      1320
     aggctcacac gcttctcggg cgccctcaac tgcaaggaaa atatggaatg ctgaaacaca      1380
     gaacttcatt tcttgaatgg caggaaactg caagaaggtg gagaggggag ggagtaattt      1440
     tgtaagagat gtgatataag agatagaagt gggaaatttg aaggatttgc aattgtatgt      1500
     cttctgtgtt gtccaacagt aatgatttta gcgttgtacc                            1540
//
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